Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS42235

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS42225 and QEN71_RS42230 overlap by 4 nucleotidesQEN71_RS42230 and QEN71_RS42235 are separated by 14 nucleotidesQEN71_RS42235 and QEN71_RS42240 are separated by 42 nucleotides QEN71_RS42225: QEN71_RS42225 - electron transfer flavoprotein subunit alpha/FixB family protein, at 526,234 to 527,361 _RS42225 QEN71_RS42230: QEN71_RS42230 - electron transfer flavoprotein subunit beta/FixA family protein, at 527,358 to 528,206 _RS42230 QEN71_RS42235: QEN71_RS42235 - nitrogenase stabilizing/protective protein NifW, at 528,221 to 528,559 _RS42235 QEN71_RS42240: QEN71_RS42240 - homocitrate synthase, at 528,602 to 529,738 _RS42240 Position (kb) 528 529Strain fitness (log2 ratio) -2 -1 0 1 2at 527.221 kb on - strand, within QEN71_RS42225at 527.221 kb on - strand, within QEN71_RS42225at 527.221 kb on - strand, within QEN71_RS42225at 527.224 kb on + strand, within QEN71_RS42225at 527.224 kb on + strand, within QEN71_RS42225at 527.224 kb on + strand, within QEN71_RS42225at 527.224 kb on + strand, within QEN71_RS42225at 527.225 kb on - strand, within QEN71_RS42225at 527.225 kb on - strand, within QEN71_RS42225at 527.225 kb on - strand, within QEN71_RS42225at 527.268 kb on - strandat 527.268 kb on - strandat 527.268 kb on - strandat 527.392 kb on - strandat 527.412 kb on + strandat 527.412 kb on + strandat 527.413 kb on - strandat 527.417 kb on + strandat 527.418 kb on - strandat 527.418 kb on - strandat 527.418 kb on - strandat 527.692 kb on - strand, within QEN71_RS42230at 527.770 kb on + strand, within QEN71_RS42230at 527.771 kb on - strand, within QEN71_RS42230at 527.771 kb on - strand, within QEN71_RS42230at 527.771 kb on - strand, within QEN71_RS42230at 527.771 kb on - strand, within QEN71_RS42230at 527.771 kb on - strand, within QEN71_RS42230at 527.771 kb on - strand, within QEN71_RS42230at 527.911 kb on + strand, within QEN71_RS42230at 527.912 kb on - strand, within QEN71_RS42230at 527.912 kb on - strand, within QEN71_RS42230at 527.980 kb on + strand, within QEN71_RS42230at 527.980 kb on + strand, within QEN71_RS42230at 527.993 kb on + strand, within QEN71_RS42230at 528.200 kb on + strandat 528.200 kb on + strandat 528.200 kb on + strandat 528.200 kb on + strandat 528.201 kb on - strandat 528.308 kb on + strand, within QEN71_RS42235at 528.348 kb on + strand, within QEN71_RS42235at 528.429 kb on + strand, within QEN71_RS42235at 528.534 kb on + strandat 528.534 kb on + strandat 528.535 kb on - strandat 528.956 kb on + strand, within QEN71_RS42240at 528.956 kb on + strand, within QEN71_RS42240at 528.957 kb on - strand, within QEN71_RS42240at 529.010 kb on + strand, within QEN71_RS42240at 529.010 kb on + strand, within QEN71_RS42240at 529.013 kb on + strand, within QEN71_RS42240at 529.013 kb on + strand, within QEN71_RS42240at 529.014 kb on - strand, within QEN71_RS42240at 529.129 kb on + strand, within QEN71_RS42240at 529.219 kb on + strand, within QEN71_RS42240at 529.220 kb on - strand, within QEN71_RS42240at 529.299 kb on - strand, within QEN71_RS42240at 529.389 kb on - strand, within QEN71_RS42240

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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527,221 - QEN71_RS42225 0.88 +0.1
527,221 - QEN71_RS42225 0.88 +0.6
527,221 - QEN71_RS42225 0.88 +1.7
527,224 + QEN71_RS42225 0.88 -0.6
527,224 + QEN71_RS42225 0.88 -2.3
527,224 + QEN71_RS42225 0.88 -0.7
527,224 + QEN71_RS42225 0.88 +0.4
527,225 - QEN71_RS42225 0.88 +1.0
527,225 - QEN71_RS42225 0.88 +1.4
527,225 - QEN71_RS42225 0.88 +0.4
527,268 - +1.2
527,268 - +2.3
527,268 - +1.4
527,392 - +0.4
527,412 + +0.2
527,412 + +0.2
527,413 - +1.2
527,417 + +0.6
527,418 - +0.4
527,418 - +1.1
527,418 - +0.6
527,692 - QEN71_RS42230 0.39 +0.7
527,770 + QEN71_RS42230 0.49 -0.5
527,771 - QEN71_RS42230 0.49 +0.5
527,771 - QEN71_RS42230 0.49 -2.2
527,771 - QEN71_RS42230 0.49 -0.0
527,771 - QEN71_RS42230 0.49 +1.0
527,771 - QEN71_RS42230 0.49 +0.3
527,771 - QEN71_RS42230 0.49 +1.4
527,911 + QEN71_RS42230 0.65 +1.7
527,912 - QEN71_RS42230 0.65 -0.2
527,912 - QEN71_RS42230 0.65 -0.1
527,980 + QEN71_RS42230 0.73 +1.1
527,980 + QEN71_RS42230 0.73 -1.1
527,993 + QEN71_RS42230 0.75 -0.1
528,200 + +0.4
528,200 + +1.1
528,200 + -0.6
528,200 + -1.3
528,201 - +1.4
528,308 + QEN71_RS42235 0.26 -0.9
528,348 + QEN71_RS42235 0.37 -0.9
528,429 + QEN71_RS42235 0.61 -2.0
528,534 + -0.9
528,534 + +2.4
528,535 - +2.3
528,956 + QEN71_RS42240 0.31 +0.8
528,956 + QEN71_RS42240 0.31 +0.1
528,957 - QEN71_RS42240 0.31 +1.5
529,010 + QEN71_RS42240 0.36 +0.9
529,010 + QEN71_RS42240 0.36 -0.2
529,013 + QEN71_RS42240 0.36 +0.8
529,013 + QEN71_RS42240 0.36 -1.1
529,014 - QEN71_RS42240 0.36 -0.3
529,129 + QEN71_RS42240 0.46 +0.2
529,219 + QEN71_RS42240 0.54 +0.4
529,220 - QEN71_RS42240 0.54 +1.4
529,299 - QEN71_RS42240 0.61 +0.7
529,389 - QEN71_RS42240 0.69 +1.0

Or see this region's nucleotide sequence