Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42225 and QEN71_RS42230 overlap by 4 nucleotides QEN71_RS42230 and QEN71_RS42235 are separated by 14 nucleotides QEN71_RS42235 and QEN71_RS42240 are separated by 42 nucleotides
QEN71_RS42225: QEN71_RS42225 - electron transfer flavoprotein subunit alpha/FixB family protein, at 526,234 to 527,361
_RS42225
QEN71_RS42230: QEN71_RS42230 - electron transfer flavoprotein subunit beta/FixA family protein, at 527,358 to 528,206
_RS42230
QEN71_RS42235: QEN71_RS42235 - nitrogenase stabilizing/protective protein NifW, at 528,221 to 528,559
_RS42235
QEN71_RS42240: QEN71_RS42240 - homocitrate synthase, at 528,602 to 529,738
_RS42240
Position (kb) 528
529 Strain fitness (log2 ratio) -2
-1
0
1
2 at 527.221 kb on - strand, within QEN71_RS42225 at 527.221 kb on - strand, within QEN71_RS42225 at 527.221 kb on - strand, within QEN71_RS42225 at 527.224 kb on + strand, within QEN71_RS42225 at 527.224 kb on + strand, within QEN71_RS42225 at 527.224 kb on + strand, within QEN71_RS42225 at 527.224 kb on + strand, within QEN71_RS42225 at 527.225 kb on - strand, within QEN71_RS42225 at 527.225 kb on - strand, within QEN71_RS42225 at 527.225 kb on - strand, within QEN71_RS42225 at 527.268 kb on - strand at 527.268 kb on - strand at 527.268 kb on - strand at 527.392 kb on - strand at 527.412 kb on + strand at 527.412 kb on + strand at 527.413 kb on - strand at 527.417 kb on + strand at 527.418 kb on - strand at 527.418 kb on - strand at 527.418 kb on - strand at 527.692 kb on - strand, within QEN71_RS42230 at 527.770 kb on + strand, within QEN71_RS42230 at 527.771 kb on - strand, within QEN71_RS42230 at 527.771 kb on - strand, within QEN71_RS42230 at 527.771 kb on - strand, within QEN71_RS42230 at 527.771 kb on - strand, within QEN71_RS42230 at 527.771 kb on - strand, within QEN71_RS42230 at 527.771 kb on - strand, within QEN71_RS42230 at 527.911 kb on + strand, within QEN71_RS42230 at 527.912 kb on - strand, within QEN71_RS42230 at 527.912 kb on - strand, within QEN71_RS42230 at 527.980 kb on + strand, within QEN71_RS42230 at 527.980 kb on + strand, within QEN71_RS42230 at 527.993 kb on + strand, within QEN71_RS42230 at 528.200 kb on + strand at 528.200 kb on + strand at 528.200 kb on + strand at 528.200 kb on + strand at 528.201 kb on - strand at 528.308 kb on + strand, within QEN71_RS42235 at 528.348 kb on + strand, within QEN71_RS42235 at 528.429 kb on + strand, within QEN71_RS42235 at 528.534 kb on + strand at 528.534 kb on + strand at 528.535 kb on - strand at 528.956 kb on + strand, within QEN71_RS42240 at 528.956 kb on + strand, within QEN71_RS42240 at 528.957 kb on - strand, within QEN71_RS42240 at 529.010 kb on + strand, within QEN71_RS42240 at 529.010 kb on + strand, within QEN71_RS42240 at 529.013 kb on + strand, within QEN71_RS42240 at 529.013 kb on + strand, within QEN71_RS42240 at 529.014 kb on - strand, within QEN71_RS42240 at 529.129 kb on + strand, within QEN71_RS42240 at 529.219 kb on + strand, within QEN71_RS42240 at 529.220 kb on - strand, within QEN71_RS42240 at 529.299 kb on - strand, within QEN71_RS42240 at 529.389 kb on - strand, within QEN71_RS42240
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 527,221 - QEN71_RS42225 0.88 +0.1 527,221 - QEN71_RS42225 0.88 +0.6 527,221 - QEN71_RS42225 0.88 +1.7 527,224 + QEN71_RS42225 0.88 -0.6 527,224 + QEN71_RS42225 0.88 -2.3 527,224 + QEN71_RS42225 0.88 -0.7 527,224 + QEN71_RS42225 0.88 +0.4 527,225 - QEN71_RS42225 0.88 +1.0 527,225 - QEN71_RS42225 0.88 +1.4 527,225 - QEN71_RS42225 0.88 +0.4 527,268 - +1.2 527,268 - +2.3 527,268 - +1.4 527,392 - +0.4 527,412 + +0.2 527,412 + +0.2 527,413 - +1.2 527,417 + +0.6 527,418 - +0.4 527,418 - +1.1 527,418 - +0.6 527,692 - QEN71_RS42230 0.39 +0.7 527,770 + QEN71_RS42230 0.49 -0.5 527,771 - QEN71_RS42230 0.49 +0.5 527,771 - QEN71_RS42230 0.49 -2.2 527,771 - QEN71_RS42230 0.49 -0.0 527,771 - QEN71_RS42230 0.49 +1.0 527,771 - QEN71_RS42230 0.49 +0.3 527,771 - QEN71_RS42230 0.49 +1.4 527,911 + QEN71_RS42230 0.65 +1.7 527,912 - QEN71_RS42230 0.65 -0.2 527,912 - QEN71_RS42230 0.65 -0.1 527,980 + QEN71_RS42230 0.73 +1.1 527,980 + QEN71_RS42230 0.73 -1.1 527,993 + QEN71_RS42230 0.75 -0.1 528,200 + +0.4 528,200 + +1.1 528,200 + -0.6 528,200 + -1.3 528,201 - +1.4 528,308 + QEN71_RS42235 0.26 -0.9 528,348 + QEN71_RS42235 0.37 -0.9 528,429 + QEN71_RS42235 0.61 -2.0 528,534 + -0.9 528,534 + +2.4 528,535 - +2.3 528,956 + QEN71_RS42240 0.31 +0.8 528,956 + QEN71_RS42240 0.31 +0.1 528,957 - QEN71_RS42240 0.31 +1.5 529,010 + QEN71_RS42240 0.36 +0.9 529,010 + QEN71_RS42240 0.36 -0.2 529,013 + QEN71_RS42240 0.36 +0.8 529,013 + QEN71_RS42240 0.36 -1.1 529,014 - QEN71_RS42240 0.36 -0.3 529,129 + QEN71_RS42240 0.46 +0.2 529,219 + QEN71_RS42240 0.54 +0.4 529,220 - QEN71_RS42240 0.54 +1.4 529,299 - QEN71_RS42240 0.61 +0.7 529,389 - QEN71_RS42240 0.69 +1.0
Or see this region's nucleotide sequence