Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41800 and QEN71_RS41805 are separated by 53 nucleotides QEN71_RS41805 and QEN71_RS41810 overlap by 8 nucleotides QEN71_RS41810 and QEN71_RS41815 overlap by 4 nucleotides
QEN71_RS41800: QEN71_RS41800 - GTPase-associated system all-helical protein GASH, at 440,717 to 441,970
_RS41800
QEN71_RS41805: QEN71_RS41805 - hypothetical protein, at 442,024 to 442,917
_RS41805
QEN71_RS41810: QEN71_RS41810 - hypothetical protein, at 442,910 to 443,758
_RS41810
QEN71_RS41815: QEN71_RS41815 - hypothetical protein, at 443,755 to 446,133
_RS41815
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 442.175 kb on - strand, within QEN71_RS41805 at 442.175 kb on - strand, within QEN71_RS41805 at 442.246 kb on + strand, within QEN71_RS41805 at 442.247 kb on - strand, within QEN71_RS41805 at 442.247 kb on - strand, within QEN71_RS41805 at 442.247 kb on - strand, within QEN71_RS41805 at 442.247 kb on - strand, within QEN71_RS41805 at 442.452 kb on + strand, within QEN71_RS41805 at 442.453 kb on - strand, within QEN71_RS41805 at 442.485 kb on + strand, within QEN71_RS41805 at 442.485 kb on + strand, within QEN71_RS41805 at 442.748 kb on + strand, within QEN71_RS41805 at 442.749 kb on - strand, within QEN71_RS41805 at 442.915 kb on + strand at 442.915 kb on + strand at 442.915 kb on + strand at 442.915 kb on + strand at 442.916 kb on - strand at 442.916 kb on - strand at 442.933 kb on - strand at 442.979 kb on + strand at 442.979 kb on + strand at 442.979 kb on + strand at 442.980 kb on - strand at 442.980 kb on - strand at 442.980 kb on - strand at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.113 kb on + strand, within QEN71_RS41810 at 443.113 kb on + strand, within QEN71_RS41810 at 443.114 kb on - strand, within QEN71_RS41810 at 443.167 kb on + strand, within QEN71_RS41810 at 443.168 kb on - strand, within QEN71_RS41810 at 443.168 kb on - strand, within QEN71_RS41810 at 443.301 kb on + strand, within QEN71_RS41810 at 443.328 kb on + strand, within QEN71_RS41810 at 443.341 kb on + strand, within QEN71_RS41810 at 443.341 kb on + strand, within QEN71_RS41810 at 443.341 kb on + strand, within QEN71_RS41810 at 443.341 kb on + strand, within QEN71_RS41810 at 443.342 kb on - strand, within QEN71_RS41810 at 443.342 kb on - strand, within QEN71_RS41810 at 443.342 kb on - strand, within QEN71_RS41810 at 443.342 kb on - strand, within QEN71_RS41810 at 443.350 kb on + strand, within QEN71_RS41810 at 443.351 kb on - strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.478 kb on + strand, within QEN71_RS41810 at 443.479 kb on - strand, within QEN71_RS41810 at 443.626 kb on + strand, within QEN71_RS41810 at 443.672 kb on + strand, within QEN71_RS41810 at 443.672 kb on + strand, within QEN71_RS41810 at 443.725 kb on + strand at 443.725 kb on + strand at 443.725 kb on + strand at 443.725 kb on + strand at 443.726 kb on - strand at 443.802 kb on + strand at 443.802 kb on + strand at 443.803 kb on - strand at 443.803 kb on - strand at 443.949 kb on + strand at 443.949 kb on + strand at 443.949 kb on + strand at 443.949 kb on + strand at 443.949 kb on + strand at 443.950 kb on - strand at 444.005 kb on + strand, within QEN71_RS41815 at 444.005 kb on + strand, within QEN71_RS41815 at 444.005 kb on + strand, within QEN71_RS41815 at 444.006 kb on - strand, within QEN71_RS41815 at 444.015 kb on - strand, within QEN71_RS41815 at 444.041 kb on + strand, within QEN71_RS41815 at 444.041 kb on + strand, within QEN71_RS41815 at 444.041 kb on + strand, within QEN71_RS41815 at 444.042 kb on - strand, within QEN71_RS41815 at 444.078 kb on + strand, within QEN71_RS41815 at 444.078 kb on + strand, within QEN71_RS41815 at 444.079 kb on - strand, within QEN71_RS41815 at 444.079 kb on - strand, within QEN71_RS41815 at 444.261 kb on + strand, within QEN71_RS41815 at 444.261 kb on + strand, within QEN71_RS41815 at 444.262 kb on - strand, within QEN71_RS41815 at 444.262 kb on - strand, within QEN71_RS41815 at 444.262 kb on - strand, within QEN71_RS41815 at 444.262 kb on - strand, within QEN71_RS41815 at 444.274 kb on - strand, within QEN71_RS41815 at 444.287 kb on + strand, within QEN71_RS41815 at 444.344 kb on + strand, within QEN71_RS41815 at 444.345 kb on - strand, within QEN71_RS41815 at 444.566 kb on + strand, within QEN71_RS41815 at 444.566 kb on + strand, within QEN71_RS41815 at 444.566 kb on + strand, within QEN71_RS41815 at 444.567 kb on - strand, within QEN71_RS41815 at 444.567 kb on - strand, within QEN71_RS41815 at 444.572 kb on + strand, within QEN71_RS41815 at 444.681 kb on + strand, within QEN71_RS41815 at 444.703 kb on - strand, within QEN71_RS41815
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 442,175 - QEN71_RS41805 0.17 +0.0 442,175 - QEN71_RS41805 0.17 +0.0 442,246 + QEN71_RS41805 0.25 +0.1 442,247 - QEN71_RS41805 0.25 -0.1 442,247 - QEN71_RS41805 0.25 -0.2 442,247 - QEN71_RS41805 0.25 -1.2 442,247 - QEN71_RS41805 0.25 +0.0 442,452 + QEN71_RS41805 0.48 +0.7 442,453 - QEN71_RS41805 0.48 -0.7 442,485 + QEN71_RS41805 0.52 +0.1 442,485 + QEN71_RS41805 0.52 +0.1 442,748 + QEN71_RS41805 0.81 +1.6 442,749 - QEN71_RS41805 0.81 +0.1 442,915 + -0.3 442,915 + -1.2 442,915 + +1.2 442,915 + -0.3 442,916 - -1.1 442,916 - -0.5 442,933 - -0.0 442,979 + -0.2 442,979 + +0.2 442,979 + +0.9 442,980 - +0.4 442,980 - +0.0 442,980 - +0.4 443,101 + QEN71_RS41810 0.22 +0.4 443,101 + QEN71_RS41810 0.22 +0.2 443,101 + QEN71_RS41810 0.22 +0.6 443,101 + QEN71_RS41810 0.22 +0.9 443,101 + QEN71_RS41810 0.22 -0.2 443,101 + QEN71_RS41810 0.22 +1.2 443,101 + QEN71_RS41810 0.22 -0.6 443,102 - QEN71_RS41810 0.23 -0.9 443,102 - QEN71_RS41810 0.23 +0.6 443,102 - QEN71_RS41810 0.23 -1.0 443,102 - QEN71_RS41810 0.23 +0.1 443,102 - QEN71_RS41810 0.23 +0.7 443,102 - QEN71_RS41810 0.23 +0.9 443,102 - QEN71_RS41810 0.23 -0.7 443,102 - QEN71_RS41810 0.23 -0.0 443,102 - QEN71_RS41810 0.23 -0.5 443,113 + QEN71_RS41810 0.24 +1.2 443,113 + QEN71_RS41810 0.24 +0.6 443,114 - QEN71_RS41810 0.24 +0.4 443,167 + QEN71_RS41810 0.30 +0.5 443,168 - QEN71_RS41810 0.30 +0.4 443,168 - QEN71_RS41810 0.30 -2.2 443,301 + QEN71_RS41810 0.46 +0.2 443,328 + QEN71_RS41810 0.49 +0.5 443,341 + QEN71_RS41810 0.51 -0.1 443,341 + QEN71_RS41810 0.51 -0.1 443,341 + QEN71_RS41810 0.51 +0.1 443,341 + QEN71_RS41810 0.51 +0.5 443,342 - QEN71_RS41810 0.51 +0.8 443,342 - QEN71_RS41810 0.51 +0.1 443,342 - QEN71_RS41810 0.51 +2.8 443,342 - QEN71_RS41810 0.51 +0.5 443,350 + QEN71_RS41810 0.52 -0.5 443,351 - QEN71_RS41810 0.52 +0.5 443,412 + QEN71_RS41810 0.59 +0.2 443,412 + QEN71_RS41810 0.59 -0.6 443,412 + QEN71_RS41810 0.59 -0.7 443,412 + QEN71_RS41810 0.59 +0.1 443,412 + QEN71_RS41810 0.59 -1.2 443,412 + QEN71_RS41810 0.59 +0.2 443,412 + QEN71_RS41810 0.59 -0.8 443,413 - QEN71_RS41810 0.59 -1.0 443,413 - QEN71_RS41810 0.59 +0.6 443,413 - QEN71_RS41810 0.59 +0.5 443,413 - QEN71_RS41810 0.59 -1.5 443,413 - QEN71_RS41810 0.59 -0.5 443,478 + QEN71_RS41810 0.67 +1.8 443,479 - QEN71_RS41810 0.67 +0.1 443,626 + QEN71_RS41810 0.84 -0.9 443,672 + QEN71_RS41810 0.90 -1.2 443,672 + QEN71_RS41810 0.90 -0.7 443,725 + -1.1 443,725 + +0.5 443,725 + -0.1 443,725 + +0.6 443,726 - -0.0 443,802 + +0.4 443,802 + +0.3 443,803 - -0.2 443,803 - +0.8 443,949 + -1.2 443,949 + -1.0 443,949 + -0.5 443,949 + -1.3 443,949 + +2.4 443,950 - -0.5 444,005 + QEN71_RS41815 0.11 +1.7 444,005 + QEN71_RS41815 0.11 -0.3 444,005 + QEN71_RS41815 0.11 -1.2 444,006 - QEN71_RS41815 0.11 +0.1 444,015 - QEN71_RS41815 0.11 -1.0 444,041 + QEN71_RS41815 0.12 +0.4 444,041 + QEN71_RS41815 0.12 -0.2 444,041 + QEN71_RS41815 0.12 +1.1 444,042 - QEN71_RS41815 0.12 +0.2 444,078 + QEN71_RS41815 0.14 +0.7 444,078 + QEN71_RS41815 0.14 -1.4 444,079 - QEN71_RS41815 0.14 +0.2 444,079 - QEN71_RS41815 0.14 +0.4 444,261 + QEN71_RS41815 0.21 +0.0 444,261 + QEN71_RS41815 0.21 -1.3 444,262 - QEN71_RS41815 0.21 -0.2 444,262 - QEN71_RS41815 0.21 -0.1 444,262 - QEN71_RS41815 0.21 -1.0 444,262 - QEN71_RS41815 0.21 -0.4 444,274 - QEN71_RS41815 0.22 +0.3 444,287 + QEN71_RS41815 0.22 +2.1 444,344 + QEN71_RS41815 0.25 +0.6 444,345 - QEN71_RS41815 0.25 -1.6 444,566 + QEN71_RS41815 0.34 +0.5 444,566 + QEN71_RS41815 0.34 +0.9 444,566 + QEN71_RS41815 0.34 -1.1 444,567 - QEN71_RS41815 0.34 -0.7 444,567 - QEN71_RS41815 0.34 +1.7 444,572 + QEN71_RS41815 0.34 +0.2 444,681 + QEN71_RS41815 0.39 -3.2 444,703 - QEN71_RS41815 0.40 -0.9
Or see this region's nucleotide sequence