Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41130 and QEN71_RS41135 are separated by 119 nucleotides QEN71_RS41135 and QEN71_RS41140 are separated by 103 nucleotides QEN71_RS41140 and QEN71_RS41145 overlap by 4 nucleotides QEN71_RS41145 and QEN71_RS41150 are separated by 28 nucleotides QEN71_RS41150 and QEN71_RS41155 are separated by 124 nucleotides
QEN71_RS41130: QEN71_RS41130 - HU family DNA-binding protein, at 297,675 to 297,953
_RS41130
QEN71_RS41135: QEN71_RS41135 - DUF1488 family protein, at 298,073 to 298,342
_RS41135
QEN71_RS41140: QEN71_RS41140 - type II toxin-antitoxin system RelE/ParE family toxin, at 298,446 to 298,742
_RS41140
QEN71_RS41145: QEN71_RS41145 - hypothetical protein, at 298,739 to 299,197
_RS41145
QEN71_RS41150: QEN71_RS41150 - hypothetical protein, at 299,226 to 299,504
_RS41150
QEN71_RS41155: QEN71_RS41155 - site-specific integrase, at 299,629 to 301,311
_RS41155
Position (kb) 298
299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 297.808 kb on + strand, within QEN71_RS41130 at 297.809 kb on - strand, within QEN71_RS41130 at 297.809 kb on - strand, within QEN71_RS41130 at 297.887 kb on - strand, within QEN71_RS41130 at 297.951 kb on + strand at 297.951 kb on + strand at 297.951 kb on + strand at 297.952 kb on - strand at 297.990 kb on + strand at 297.991 kb on - strand at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.224 kb on + strand, within QEN71_RS41135 at 298.225 kb on - strand, within QEN71_RS41135 at 298.225 kb on - strand, within QEN71_RS41135 at 298.225 kb on - strand, within QEN71_RS41135 at 298.225 kb on - strand, within QEN71_RS41135 at 298.225 kb on - strand, within QEN71_RS41135 at 298.267 kb on + strand, within QEN71_RS41135 at 298.268 kb on - strand, within QEN71_RS41135 at 298.268 kb on - strand, within QEN71_RS41135 at 298.342 kb on + strand at 298.365 kb on - strand at 298.546 kb on + strand, within QEN71_RS41140 at 298.546 kb on + strand, within QEN71_RS41140 at 298.546 kb on + strand, within QEN71_RS41140 at 298.546 kb on + strand, within QEN71_RS41140 at 298.546 kb on + strand, within QEN71_RS41140 at 298.546 kb on + strand, within QEN71_RS41140 at 298.546 kb on + strand, within QEN71_RS41140 at 298.546 kb on + strand, within QEN71_RS41140 at 298.546 kb on + strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.547 kb on - strand, within QEN71_RS41140 at 298.561 kb on - strand, within QEN71_RS41140 at 298.561 kb on - strand, within QEN71_RS41140 at 298.574 kb on + strand, within QEN71_RS41140 at 298.583 kb on + strand, within QEN71_RS41140 at 298.584 kb on - strand, within QEN71_RS41140 at 298.597 kb on + strand, within QEN71_RS41140 at 298.597 kb on + strand, within QEN71_RS41140 at 298.597 kb on + strand, within QEN71_RS41140 at 298.598 kb on - strand, within QEN71_RS41140 at 298.598 kb on - strand, within QEN71_RS41140 at 298.598 kb on - strand, within QEN71_RS41140 at 298.638 kb on + strand, within QEN71_RS41140 at 298.685 kb on + strand, within QEN71_RS41140 at 298.685 kb on + strand, within QEN71_RS41140 at 298.687 kb on + strand, within QEN71_RS41140 at 298.687 kb on + strand, within QEN71_RS41140 at 298.687 kb on + strand, within QEN71_RS41140 at 298.688 kb on - strand, within QEN71_RS41140 at 298.688 kb on - strand, within QEN71_RS41140 at 298.747 kb on + strand at 298.747 kb on + strand at 299.085 kb on + strand, within QEN71_RS41145 at 299.085 kb on + strand, within QEN71_RS41145 at 299.085 kb on + strand, within QEN71_RS41145 at 299.227 kb on + strand at 299.228 kb on - strand at 299.279 kb on - strand, within QEN71_RS41150 at 299.358 kb on - strand, within QEN71_RS41150 at 299.358 kb on - strand, within QEN71_RS41150 at 299.358 kb on - strand, within QEN71_RS41150 at 299.358 kb on - strand, within QEN71_RS41150 at 299.366 kb on - strand, within QEN71_RS41150 at 299.518 kb on + strand at 299.556 kb on + strand at 299.557 kb on - strand at 299.564 kb on + strand at 299.564 kb on + strand at 299.564 kb on + strand at 299.564 kb on + strand at 299.564 kb on + strand at 299.564 kb on + strand at 299.578 kb on + strand at 299.583 kb on + strand at 299.599 kb on + strand at 299.599 kb on + strand at 299.600 kb on - strand at 299.600 kb on - strand at 299.600 kb on - strand at 299.600 kb on - strand at 299.600 kb on - strand at 299.694 kb on - strand at 299.775 kb on + strand at 299.776 kb on - strand at 299.977 kb on - strand, within QEN71_RS41155 at 300.003 kb on - strand, within QEN71_RS41155
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 297,808 + QEN71_RS41130 0.48 +0.5 297,809 - QEN71_RS41130 0.48 -0.4 297,809 - QEN71_RS41130 0.48 -0.0 297,887 - QEN71_RS41130 0.76 -0.1 297,951 + +0.5 297,951 + -0.1 297,951 + -0.7 297,952 - -0.1 297,990 + -0.2 297,991 - -1.1 298,224 + QEN71_RS41135 0.56 +0.3 298,224 + QEN71_RS41135 0.56 +0.7 298,224 + QEN71_RS41135 0.56 +2.1 298,224 + QEN71_RS41135 0.56 -1.1 298,224 + QEN71_RS41135 0.56 -0.1 298,224 + QEN71_RS41135 0.56 +0.7 298,224 + QEN71_RS41135 0.56 -0.3 298,224 + QEN71_RS41135 0.56 +2.1 298,224 + QEN71_RS41135 0.56 +0.9 298,224 + QEN71_RS41135 0.56 -0.1 298,224 + QEN71_RS41135 0.56 +1.3 298,225 - QEN71_RS41135 0.56 +0.2 298,225 - QEN71_RS41135 0.56 +0.5 298,225 - QEN71_RS41135 0.56 -0.7 298,225 - QEN71_RS41135 0.56 -0.8 298,225 - QEN71_RS41135 0.56 +1.7 298,267 + QEN71_RS41135 0.72 -0.9 298,268 - QEN71_RS41135 0.72 -1.8 298,268 - QEN71_RS41135 0.72 +0.1 298,342 + -0.0 298,365 - +0.7 298,546 + QEN71_RS41140 0.34 -3.2 298,546 + QEN71_RS41140 0.34 -0.2 298,546 + QEN71_RS41140 0.34 +0.4 298,546 + QEN71_RS41140 0.34 +0.2 298,546 + QEN71_RS41140 0.34 -0.5 298,546 + QEN71_RS41140 0.34 +0.3 298,546 + QEN71_RS41140 0.34 -0.2 298,546 + QEN71_RS41140 0.34 -1.0 298,546 + QEN71_RS41140 0.34 +0.5 298,547 - QEN71_RS41140 0.34 -0.3 298,547 - QEN71_RS41140 0.34 +1.2 298,547 - QEN71_RS41140 0.34 -0.9 298,547 - QEN71_RS41140 0.34 -1.0 298,547 - QEN71_RS41140 0.34 -0.9 298,547 - QEN71_RS41140 0.34 -0.9 298,547 - QEN71_RS41140 0.34 +0.1 298,547 - QEN71_RS41140 0.34 -0.2 298,547 - QEN71_RS41140 0.34 -0.2 298,547 - QEN71_RS41140 0.34 -1.0 298,561 - QEN71_RS41140 0.39 +0.4 298,561 - QEN71_RS41140 0.39 -0.9 298,574 + QEN71_RS41140 0.43 -1.8 298,583 + QEN71_RS41140 0.46 +0.1 298,584 - QEN71_RS41140 0.46 +0.2 298,597 + QEN71_RS41140 0.51 +0.6 298,597 + QEN71_RS41140 0.51 -0.2 298,597 + QEN71_RS41140 0.51 +0.8 298,598 - QEN71_RS41140 0.51 -0.7 298,598 - QEN71_RS41140 0.51 -2.3 298,598 - QEN71_RS41140 0.51 -1.1 298,638 + QEN71_RS41140 0.65 +0.1 298,685 + QEN71_RS41140 0.80 +0.1 298,685 + QEN71_RS41140 0.80 +0.2 298,687 + QEN71_RS41140 0.81 -0.3 298,687 + QEN71_RS41140 0.81 +0.9 298,687 + QEN71_RS41140 0.81 -1.9 298,688 - QEN71_RS41140 0.81 +0.1 298,688 - QEN71_RS41140 0.81 -0.1 298,747 + +0.7 298,747 + -0.2 299,085 + QEN71_RS41145 0.75 -1.4 299,085 + QEN71_RS41145 0.75 -0.9 299,085 + QEN71_RS41145 0.75 -1.9 299,227 + -1.1 299,228 - -0.5 299,279 - QEN71_RS41150 0.19 +0.1 299,358 - QEN71_RS41150 0.47 +2.6 299,358 - QEN71_RS41150 0.47 -0.7 299,358 - QEN71_RS41150 0.47 -0.0 299,358 - QEN71_RS41150 0.47 -0.7 299,366 - QEN71_RS41150 0.50 -0.9 299,518 + -1.2 299,556 + +0.6 299,557 - -0.4 299,564 + -0.1 299,564 + -0.3 299,564 + +0.1 299,564 + -0.6 299,564 + -0.5 299,564 + +0.9 299,578 + +0.3 299,583 + -2.4 299,599 + +1.1 299,599 + +0.1 299,600 - +0.3 299,600 - +0.7 299,600 - +0.1 299,600 - -0.4 299,600 - +0.3 299,694 - -0.2 299,775 + -0.7 299,776 - +0.1 299,977 - QEN71_RS41155 0.21 +0.3 300,003 - QEN71_RS41155 0.22 -0.3
Or see this region's nucleotide sequence