Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS40825 and QEN71_RS40830 overlap by 4 nucleotides QEN71_RS40830 and QEN71_RS40835 are separated by 163 nucleotides QEN71_RS40835 and QEN71_RS40840 are separated by 422 nucleotides
QEN71_RS40825: QEN71_RS40825 - hypothetical protein, at 228,303 to 229,142
_RS40825
QEN71_RS40830: QEN71_RS40830 - hypothetical protein, at 229,139 to 229,789
_RS40830
QEN71_RS40835: QEN71_RS40835 - IS110 family transposase, at 229,953 to 230,972
_RS40835
QEN71_RS40840: QEN71_RS40840 - IS21 family transposase, at 231,395 to 232,888
_RS40840
Position (kb) 229
230
231 Strain fitness (log2 ratio) -2
-1
0
1
2 at 228.963 kb on + strand, within QEN71_RS40825 at 228.976 kb on + strand, within QEN71_RS40825 at 228.977 kb on - strand, within QEN71_RS40825 at 228.983 kb on + strand, within QEN71_RS40825 at 228.983 kb on + strand, within QEN71_RS40825 at 228.983 kb on + strand, within QEN71_RS40825 at 228.983 kb on + strand, within QEN71_RS40825 at 228.983 kb on + strand, within QEN71_RS40825 at 228.983 kb on + strand, within QEN71_RS40825 at 228.983 kb on + strand, within QEN71_RS40825 at 228.983 kb on + strand, within QEN71_RS40825 at 228.984 kb on - strand, within QEN71_RS40825 at 228.984 kb on - strand, within QEN71_RS40825 at 228.984 kb on - strand, within QEN71_RS40825 at 228.984 kb on - strand, within QEN71_RS40825 at 228.984 kb on - strand, within QEN71_RS40825 at 228.984 kb on - strand, within QEN71_RS40825 at 228.984 kb on - strand, within QEN71_RS40825 at 229.002 kb on - strand, within QEN71_RS40825 at 229.002 kb on - strand, within QEN71_RS40825 at 229.030 kb on + strand, within QEN71_RS40825 at 229.030 kb on + strand, within QEN71_RS40825 at 229.030 kb on + strand, within QEN71_RS40825 at 229.030 kb on + strand, within QEN71_RS40825 at 229.030 kb on + strand, within QEN71_RS40825 at 229.030 kb on + strand, within QEN71_RS40825 at 229.031 kb on - strand, within QEN71_RS40825 at 229.031 kb on - strand, within QEN71_RS40825 at 229.031 kb on - strand, within QEN71_RS40825 at 229.031 kb on - strand, within QEN71_RS40825 at 229.056 kb on + strand, within QEN71_RS40825 at 229.056 kb on + strand, within QEN71_RS40825 at 229.057 kb on - strand, within QEN71_RS40825 at 229.057 kb on - strand, within QEN71_RS40825 at 229.065 kb on + strand at 229.065 kb on + strand at 229.065 kb on + strand at 229.066 kb on - strand at 229.066 kb on - strand at 229.066 kb on - strand at 229.066 kb on - strand at 229.074 kb on - strand at 229.074 kb on - strand at 229.096 kb on + strand at 229.096 kb on + strand at 229.097 kb on - strand at 229.097 kb on - strand at 229.140 kb on + strand at 229.140 kb on + strand at 229.140 kb on + strand at 229.140 kb on + strand at 229.140 kb on + strand at 229.143 kb on + strand at 229.143 kb on + strand at 229.143 kb on + strand at 229.144 kb on - strand at 229.144 kb on - strand at 229.144 kb on - strand at 229.144 kb on - strand at 229.212 kb on + strand, within QEN71_RS40830 at 229.212 kb on + strand, within QEN71_RS40830 at 229.213 kb on - strand, within QEN71_RS40830 at 229.213 kb on - strand, within QEN71_RS40830 at 229.213 kb on - strand, within QEN71_RS40830 at 229.233 kb on + strand, within QEN71_RS40830 at 229.234 kb on - strand, within QEN71_RS40830 at 229.320 kb on + strand, within QEN71_RS40830 at 229.321 kb on - strand, within QEN71_RS40830 at 229.351 kb on + strand, within QEN71_RS40830 at 229.352 kb on - strand, within QEN71_RS40830 at 229.410 kb on + strand, within QEN71_RS40830 at 229.410 kb on + strand, within QEN71_RS40830 at 229.410 kb on + strand, within QEN71_RS40830 at 229.410 kb on + strand, within QEN71_RS40830 at 229.614 kb on + strand, within QEN71_RS40830 at 229.614 kb on + strand, within QEN71_RS40830 at 229.614 kb on + strand, within QEN71_RS40830 at 229.614 kb on + strand, within QEN71_RS40830 at 229.615 kb on - strand, within QEN71_RS40830 at 229.615 kb on - strand, within QEN71_RS40830 at 229.615 kb on - strand, within QEN71_RS40830 at 229.654 kb on - strand, within QEN71_RS40830 at 229.654 kb on - strand, within QEN71_RS40830 at 229.783 kb on + strand at 229.783 kb on + strand at 229.799 kb on + strand at 229.799 kb on + strand at 229.799 kb on + strand at 229.800 kb on - strand at 229.848 kb on - strand at 229.848 kb on - strand at 229.848 kb on - strand at 230.737 kb on + strand, within QEN71_RS40835 at 230.737 kb on + strand, within QEN71_RS40835 at 231.241 kb on + strand at 231.243 kb on + strand at 231.243 kb on + strand at 231.243 kb on + strand at 231.248 kb on + strand at 231.354 kb on + strand at 231.354 kb on + strand at 231.354 kb on + strand at 231.354 kb on + strand at 231.354 kb on + strand at 231.355 kb on - strand at 231.355 kb on - strand at 231.355 kb on - strand at 231.355 kb on - strand at 231.375 kb on - strand at 231.434 kb on + strand at 231.434 kb on + strand at 231.442 kb on + strand at 231.442 kb on + strand at 231.442 kb on + strand at 231.443 kb on - strand at 231.443 kb on - strand at 231.489 kb on + strand at 231.489 kb on + strand at 231.490 kb on - strand at 231.490 kb on - strand at 231.562 kb on + strand, within QEN71_RS40840 at 231.562 kb on + strand, within QEN71_RS40840 at 231.619 kb on + strand, within QEN71_RS40840 at 231.643 kb on + strand, within QEN71_RS40840 at 231.644 kb on - strand, within QEN71_RS40840 at 231.684 kb on - strand, within QEN71_RS40840 at 231.703 kb on + strand, within QEN71_RS40840 at 231.703 kb on + strand, within QEN71_RS40840 at 231.748 kb on + strand, within QEN71_RS40840 at 231.866 kb on + strand, within QEN71_RS40840 at 231.867 kb on - strand, within QEN71_RS40840 at 231.867 kb on - strand, within QEN71_RS40840 at 231.867 kb on - strand, within QEN71_RS40840 at 231.899 kb on + strand, within QEN71_RS40840 at 231.899 kb on + strand, within QEN71_RS40840 at 231.899 kb on + strand, within QEN71_RS40840 at 231.899 kb on + strand, within QEN71_RS40840 at 231.899 kb on + strand, within QEN71_RS40840 at 231.899 kb on + strand, within QEN71_RS40840 at 231.899 kb on + strand, within QEN71_RS40840 at 231.900 kb on - strand, within QEN71_RS40840 at 231.900 kb on - strand, within QEN71_RS40840 at 231.900 kb on - strand, within QEN71_RS40840 at 231.900 kb on - strand, within QEN71_RS40840
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 228,963 + QEN71_RS40825 0.79 -0.5 228,976 + QEN71_RS40825 0.80 -0.3 228,977 - QEN71_RS40825 0.80 -0.3 228,983 + QEN71_RS40825 0.81 -0.2 228,983 + QEN71_RS40825 0.81 -1.7 228,983 + QEN71_RS40825 0.81 +0.2 228,983 + QEN71_RS40825 0.81 +0.9 228,983 + QEN71_RS40825 0.81 -2.2 228,983 + QEN71_RS40825 0.81 -0.8 228,983 + QEN71_RS40825 0.81 +0.8 228,983 + QEN71_RS40825 0.81 -0.1 228,984 - QEN71_RS40825 0.81 +1.2 228,984 - QEN71_RS40825 0.81 +0.9 228,984 - QEN71_RS40825 0.81 +0.5 228,984 - QEN71_RS40825 0.81 -2.7 228,984 - QEN71_RS40825 0.81 +1.6 228,984 - QEN71_RS40825 0.81 -0.4 228,984 - QEN71_RS40825 0.81 +0.4 229,002 - QEN71_RS40825 0.83 -0.6 229,002 - QEN71_RS40825 0.83 -1.6 229,030 + QEN71_RS40825 0.87 -2.3 229,030 + QEN71_RS40825 0.87 -0.9 229,030 + QEN71_RS40825 0.87 -0.6 229,030 + QEN71_RS40825 0.87 +0.4 229,030 + QEN71_RS40825 0.87 -0.7 229,030 + QEN71_RS40825 0.87 +0.2 229,031 - QEN71_RS40825 0.87 -0.1 229,031 - QEN71_RS40825 0.87 -0.0 229,031 - QEN71_RS40825 0.87 +0.7 229,031 - QEN71_RS40825 0.87 +0.2 229,056 + QEN71_RS40825 0.90 -1.0 229,056 + QEN71_RS40825 0.90 +0.5 229,057 - QEN71_RS40825 0.90 -0.3 229,057 - QEN71_RS40825 0.90 -1.2 229,065 + -0.7 229,065 + +0.4 229,065 + +0.4 229,066 - -0.7 229,066 - +0.5 229,066 - -0.4 229,066 - +0.4 229,074 - -0.4 229,074 - -0.1 229,096 + -0.2 229,096 + +0.6 229,097 - +0.1 229,097 - -0.9 229,140 + -0.5 229,140 + +0.0 229,140 + -0.6 229,140 + +0.2 229,140 + +0.5 229,143 + +0.0 229,143 + -0.7 229,143 + -1.2 229,144 - +1.3 229,144 - +1.7 229,144 - -0.4 229,144 - -1.1 229,212 + QEN71_RS40830 0.11 +1.8 229,212 + QEN71_RS40830 0.11 -1.6 229,213 - QEN71_RS40830 0.11 -0.3 229,213 - QEN71_RS40830 0.11 +0.8 229,213 - QEN71_RS40830 0.11 +0.6 229,233 + QEN71_RS40830 0.14 -1.6 229,234 - QEN71_RS40830 0.15 +0.0 229,320 + QEN71_RS40830 0.28 -0.1 229,321 - QEN71_RS40830 0.28 -0.0 229,351 + QEN71_RS40830 0.33 +0.1 229,352 - QEN71_RS40830 0.33 -0.5 229,410 + QEN71_RS40830 0.42 -1.0 229,410 + QEN71_RS40830 0.42 -1.3 229,410 + QEN71_RS40830 0.42 +1.1 229,410 + QEN71_RS40830 0.42 -0.5 229,614 + QEN71_RS40830 0.73 -1.8 229,614 + QEN71_RS40830 0.73 -0.3 229,614 + QEN71_RS40830 0.73 +0.1 229,614 + QEN71_RS40830 0.73 -0.6 229,615 - QEN71_RS40830 0.73 +1.1 229,615 - QEN71_RS40830 0.73 +0.7 229,615 - QEN71_RS40830 0.73 -0.8 229,654 - QEN71_RS40830 0.79 +0.1 229,654 - QEN71_RS40830 0.79 +0.1 229,783 + -0.9 229,783 + +1.4 229,799 + -0.7 229,799 + +1.0 229,799 + +0.3 229,800 - -0.2 229,848 - -1.4 229,848 - -0.9 229,848 - -0.1 230,737 + QEN71_RS40835 0.77 -0.8 230,737 + QEN71_RS40835 0.77 -2.2 231,241 + -1.1 231,243 + -0.1 231,243 + +0.0 231,243 + +0.1 231,248 + -0.1 231,354 + -0.7 231,354 + +1.3 231,354 + -0.1 231,354 + +1.1 231,354 + +0.2 231,355 - -1.2 231,355 - +0.6 231,355 - -0.2 231,355 - -0.4 231,375 - -1.2 231,434 + +1.5 231,434 + -1.1 231,442 + -0.1 231,442 + -0.9 231,442 + -0.3 231,443 - -0.7 231,443 - +0.1 231,489 + -0.0 231,489 + -0.0 231,490 - -0.5 231,490 - -2.0 231,562 + QEN71_RS40840 0.11 +0.7 231,562 + QEN71_RS40840 0.11 -1.4 231,619 + QEN71_RS40840 0.15 -0.5 231,643 + QEN71_RS40840 0.17 +0.6 231,644 - QEN71_RS40840 0.17 +1.2 231,684 - QEN71_RS40840 0.19 -0.9 231,703 + QEN71_RS40840 0.21 -0.7 231,703 + QEN71_RS40840 0.21 -1.6 231,748 + QEN71_RS40840 0.24 -0.0 231,866 + QEN71_RS40840 0.32 -1.6 231,867 - QEN71_RS40840 0.32 +0.1 231,867 - QEN71_RS40840 0.32 -0.9 231,867 - QEN71_RS40840 0.32 -0.1 231,899 + QEN71_RS40840 0.34 +0.6 231,899 + QEN71_RS40840 0.34 -1.6 231,899 + QEN71_RS40840 0.34 +0.5 231,899 + QEN71_RS40840 0.34 -1.0 231,899 + QEN71_RS40840 0.34 -0.2 231,899 + QEN71_RS40840 0.34 -0.4 231,899 + QEN71_RS40840 0.34 +1.4 231,900 - QEN71_RS40840 0.34 +1.1 231,900 - QEN71_RS40840 0.34 +0.2 231,900 - QEN71_RS40840 0.34 +1.1 231,900 - QEN71_RS40840 0.34 +0.1
Or see this region's nucleotide sequence