Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS40135

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS40125 and QEN71_RS40130 are separated by 505 nucleotidesQEN71_RS40130 and QEN71_RS40135 are separated by 194 nucleotidesQEN71_RS40135 and QEN71_RS40140 are separated by 310 nucleotides QEN71_RS40125: QEN71_RS40125 - tyrosine-type recombinase/integrase, at 78,134 to 79,222 _RS40125 QEN71_RS40130: QEN71_RS40130 - integrase, at 79,728 to 79,835 _RS40130 QEN71_RS40135: QEN71_RS40135 - ATP-binding protein, at 80,030 to 80,341 _RS40135 QEN71_RS40140: QEN71_RS40140 - IS110 family transposase, at 80,652 to 81,671 _RS40140 Position (kb) 80 81Strain fitness (log2 ratio) -1 0 1at 79.260 kb on - strandat 79.260 kb on - strandat 79.712 kb on + strandat 80.031 kb on + strandat 80.048 kb on + strandat 80.105 kb on + strand, within QEN71_RS40135at 80.329 kb on + strandat 80.330 kb on - strandat 80.353 kb on + strandat 80.354 kb on - strandat 80.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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79,260 - -0.3
79,260 - +0.7
79,712 + +0.5
80,031 + +1.1
80,048 + +0.8
80,105 + QEN71_RS40135 0.24 -1.5
80,329 + +0.9
80,330 - -0.6
80,353 + -1.5
80,354 - -0.8
80,376 - +0.9

Or see this region's nucleotide sequence