Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39405 and QEN71_RS39410 are separated by 44 nucleotides QEN71_RS39410 and QEN71_RS39415 are separated by 5 nucleotides
QEN71_RS39405: QEN71_RS39405 - GMC family oxidoreductase N-terminal domain-containing protein, at 2,222,213 to 2,223,943
_RS39405
QEN71_RS39410: QEN71_RS39410 - enoyl-CoA hydratase-related protein, at 2,223,988 to 2,224,794
_RS39410
QEN71_RS39415: QEN71_RS39415 - AMP-binding protein, at 2,224,800 to 2,226,389
_RS39415
Position (kb)
2223
2224
2225 Strain fitness (log2 ratio)
-2
-1
0
1 at 2223.266 kb on - strand, within QEN71_RS39405 at 2223.330 kb on + strand, within QEN71_RS39405 at 2223.759 kb on + strand, within QEN71_RS39405 at 2223.990 kb on - strand at 2223.990 kb on - strand at 2224.073 kb on + strand, within QEN71_RS39410 at 2224.074 kb on - strand, within QEN71_RS39410 at 2224.074 kb on - strand, within QEN71_RS39410 at 2224.074 kb on - strand, within QEN71_RS39410 at 2224.251 kb on - strand, within QEN71_RS39410 at 2224.503 kb on + strand, within QEN71_RS39410 at 2224.948 kb on - strand at 2224.951 kb on + strand at 2225.024 kb on - strand, within QEN71_RS39415 at 2225.195 kb on - strand, within QEN71_RS39415 at 2225.239 kb on + strand, within QEN71_RS39415 at 2225.465 kb on - strand, within QEN71_RS39415 at 2225.465 kb on - strand, within QEN71_RS39415 at 2225.483 kb on - strand, within QEN71_RS39415 at 2225.626 kb on + strand, within QEN71_RS39415
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 2,223,266 - QEN71_RS39405 0.61 +0.8 2,223,330 + QEN71_RS39405 0.65 +1.4 2,223,759 + QEN71_RS39405 0.89 +1.7 2,223,990 - -0.0 2,223,990 - -0.2 2,224,073 + QEN71_RS39410 0.11 -0.6 2,224,074 - QEN71_RS39410 0.11 -2.0 2,224,074 - QEN71_RS39410 0.11 -1.9 2,224,074 - QEN71_RS39410 0.11 -2.1 2,224,251 - QEN71_RS39410 0.33 -0.8 2,224,503 + QEN71_RS39410 0.64 +1.1 2,224,948 - -0.6 2,224,951 + -0.2 2,225,024 - QEN71_RS39415 0.14 -1.1 2,225,195 - QEN71_RS39415 0.25 -0.1 2,225,239 + QEN71_RS39415 0.28 +0.3 2,225,465 - QEN71_RS39415 0.42 -0.2 2,225,465 - QEN71_RS39415 0.42 -1.0 2,225,483 - QEN71_RS39415 0.43 +0.1 2,225,626 + QEN71_RS39415 0.52 -1.5
Or see this region's nucleotide sequence