Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39410

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39405 and QEN71_RS39410 are separated by 44 nucleotidesQEN71_RS39410 and QEN71_RS39415 are separated by 5 nucleotides QEN71_RS39405: QEN71_RS39405 - GMC family oxidoreductase N-terminal domain-containing protein, at 2,222,213 to 2,223,943 _RS39405 QEN71_RS39410: QEN71_RS39410 - enoyl-CoA hydratase-related protein, at 2,223,988 to 2,224,794 _RS39410 QEN71_RS39415: QEN71_RS39415 - AMP-binding protein, at 2,224,800 to 2,226,389 _RS39415 Position (kb) 2223 2224 2225Strain fitness (log2 ratio) -2 -1 0 1at 2223.266 kb on - strand, within QEN71_RS39405at 2223.330 kb on + strand, within QEN71_RS39405at 2223.759 kb on + strand, within QEN71_RS39405at 2223.990 kb on - strandat 2223.990 kb on - strandat 2224.073 kb on + strand, within QEN71_RS39410at 2224.074 kb on - strand, within QEN71_RS39410at 2224.074 kb on - strand, within QEN71_RS39410at 2224.074 kb on - strand, within QEN71_RS39410at 2224.251 kb on - strand, within QEN71_RS39410at 2224.503 kb on + strand, within QEN71_RS39410at 2224.948 kb on - strandat 2224.951 kb on + strandat 2225.024 kb on - strand, within QEN71_RS39415at 2225.195 kb on - strand, within QEN71_RS39415at 2225.239 kb on + strand, within QEN71_RS39415at 2225.465 kb on - strand, within QEN71_RS39415at 2225.465 kb on - strand, within QEN71_RS39415at 2225.483 kb on - strand, within QEN71_RS39415at 2225.626 kb on + strand, within QEN71_RS39415

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,223,266 - QEN71_RS39405 0.61 +0.8
2,223,330 + QEN71_RS39405 0.65 +1.4
2,223,759 + QEN71_RS39405 0.89 +1.7
2,223,990 - -0.0
2,223,990 - -0.2
2,224,073 + QEN71_RS39410 0.11 -0.6
2,224,074 - QEN71_RS39410 0.11 -2.0
2,224,074 - QEN71_RS39410 0.11 -1.9
2,224,074 - QEN71_RS39410 0.11 -2.1
2,224,251 - QEN71_RS39410 0.33 -0.8
2,224,503 + QEN71_RS39410 0.64 +1.1
2,224,948 - -0.6
2,224,951 + -0.2
2,225,024 - QEN71_RS39415 0.14 -1.1
2,225,195 - QEN71_RS39415 0.25 -0.1
2,225,239 + QEN71_RS39415 0.28 +0.3
2,225,465 - QEN71_RS39415 0.42 -0.2
2,225,465 - QEN71_RS39415 0.42 -1.0
2,225,483 - QEN71_RS39415 0.43 +0.1
2,225,626 + QEN71_RS39415 0.52 -1.5

Or see this region's nucleotide sequence