Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39265

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39260 and QEN71_RS39265 are separated by 133 nucleotidesQEN71_RS39265 and QEN71_RS39270 are separated by 50 nucleotides QEN71_RS39260: QEN71_RS39260 - NmrA/HSCARG family protein, at 2,186,262 to 2,187,131 _RS39260 QEN71_RS39265: QEN71_RS39265 - LysR family transcriptional regulator, at 2,187,265 to 2,188,137 _RS39265 QEN71_RS39270: QEN71_RS39270 - aminotransferase class V-fold PLP-dependent enzyme, at 2,188,188 to 2,189,315 _RS39270 Position (kb) 2187 2188 2189Strain fitness (log2 ratio) -2 -1 0 1at 2186.299 kb on + strandat 2186.299 kb on + strandat 2186.470 kb on + strand, within QEN71_RS39260at 2186.470 kb on + strand, within QEN71_RS39260at 2186.503 kb on - strand, within QEN71_RS39260at 2186.766 kb on + strand, within QEN71_RS39260at 2186.815 kb on + strand, within QEN71_RS39260at 2186.816 kb on - strand, within QEN71_RS39260at 2186.842 kb on + strand, within QEN71_RS39260at 2186.843 kb on - strand, within QEN71_RS39260at 2186.843 kb on - strand, within QEN71_RS39260at 2186.984 kb on + strand, within QEN71_RS39260at 2186.984 kb on + strand, within QEN71_RS39260at 2186.985 kb on - strand, within QEN71_RS39260at 2187.107 kb on + strandat 2187.398 kb on + strand, within QEN71_RS39265at 2188.136 kb on - strandat 2188.196 kb on + strandat 2188.385 kb on - strand, within QEN71_RS39270at 2188.385 kb on - strand, within QEN71_RS39270at 2188.389 kb on - strand, within QEN71_RS39270at 2188.510 kb on + strand, within QEN71_RS39270at 2188.576 kb on + strand, within QEN71_RS39270at 2188.597 kb on + strand, within QEN71_RS39270at 2188.770 kb on - strand, within QEN71_RS39270at 2188.855 kb on + strand, within QEN71_RS39270at 2188.856 kb on - strand, within QEN71_RS39270at 2188.856 kb on - strand, within QEN71_RS39270

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,186,299 + +0.1
2,186,299 + +0.8
2,186,470 + QEN71_RS39260 0.24 -0.1
2,186,470 + QEN71_RS39260 0.24 +0.9
2,186,503 - QEN71_RS39260 0.28 +1.2
2,186,766 + QEN71_RS39260 0.58 -0.4
2,186,815 + QEN71_RS39260 0.64 +1.0
2,186,816 - QEN71_RS39260 0.64 -0.8
2,186,842 + QEN71_RS39260 0.67 +0.1
2,186,843 - QEN71_RS39260 0.67 +0.3
2,186,843 - QEN71_RS39260 0.67 -0.5
2,186,984 + QEN71_RS39260 0.83 +1.0
2,186,984 + QEN71_RS39260 0.83 -1.3
2,186,985 - QEN71_RS39260 0.83 -0.3
2,187,107 + -0.7
2,187,398 + QEN71_RS39265 0.15 -1.9
2,188,136 - +0.0
2,188,196 + +0.0
2,188,385 - QEN71_RS39270 0.17 -0.6
2,188,385 - QEN71_RS39270 0.17 +0.1
2,188,389 - QEN71_RS39270 0.18 +1.3
2,188,510 + QEN71_RS39270 0.29 -0.4
2,188,576 + QEN71_RS39270 0.34 -1.7
2,188,597 + QEN71_RS39270 0.36 +1.1
2,188,770 - QEN71_RS39270 0.52 -0.3
2,188,855 + QEN71_RS39270 0.59 -0.3
2,188,856 - QEN71_RS39270 0.59 -1.0
2,188,856 - QEN71_RS39270 0.59 +0.7

Or see this region's nucleotide sequence