Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39160 and QEN71_RS39165 are separated by 178 nucleotides QEN71_RS39165 and QEN71_RS39170 are separated by 18 nucleotides QEN71_RS39170 and QEN71_RS39175 are separated by 13 nucleotides QEN71_RS39175 and QEN71_RS39180 are separated by 65 nucleotides
QEN71_RS39160: QEN71_RS39160 - PLP-dependent aminotransferase family protein, at 2,164,100 to 2,165,509
_RS39160
QEN71_RS39165: QEN71_RS39165 - NAD(P)H-dependent oxidoreductase, at 2,165,688 to 2,166,338
_RS39165
QEN71_RS39170: QEN71_RS39170 - DUF3331 domain-containing protein, at 2,166,357 to 2,166,641
_RS39170
QEN71_RS39175: QEN71_RS39175 - SDR family oxidoreductase, at 2,166,655 to 2,167,365
_RS39175
QEN71_RS39180: QEN71_RS39180 - AraC family transcriptional regulator, at 2,167,431 to 2,168,387
_RS39180
Position (kb)
2166
2167 Strain fitness (log2 ratio)
-2
-1
0
1 at 2165.423 kb on + strand at 2165.594 kb on + strand at 2165.793 kb on - strand, within QEN71_RS39165 at 2165.824 kb on + strand, within QEN71_RS39165 at 2166.306 kb on - strand at 2166.467 kb on - strand, within QEN71_RS39170 at 2166.640 kb on - strand at 2166.646 kb on + strand at 2166.649 kb on + strand at 2166.649 kb on + strand at 2166.650 kb on - strand at 2166.650 kb on - strand at 2166.654 kb on + strand at 2166.904 kb on + strand, within QEN71_RS39175 at 2166.905 kb on - strand, within QEN71_RS39175 at 2166.966 kb on + strand, within QEN71_RS39175 at 2167.069 kb on + strand, within QEN71_RS39175 at 2167.070 kb on - strand, within QEN71_RS39175 at 2167.079 kb on + strand, within QEN71_RS39175 at 2167.080 kb on - strand, within QEN71_RS39175 at 2167.082 kb on - strand, within QEN71_RS39175 at 2167.243 kb on - strand, within QEN71_RS39175 at 2167.380 kb on + strand at 2167.381 kb on - strand at 2167.430 kb on + strand at 2167.430 kb on + strand at 2167.430 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 2,165,423 + +0.5 2,165,594 + -0.6 2,165,793 - QEN71_RS39165 0.16 +0.9 2,165,824 + QEN71_RS39165 0.21 +1.0 2,166,306 - -0.6 2,166,467 - QEN71_RS39170 0.39 -1.8 2,166,640 - -2.7 2,166,646 + -0.1 2,166,649 + -1.9 2,166,649 + -0.5 2,166,650 - +0.1 2,166,650 - -0.9 2,166,654 + -0.1 2,166,904 + QEN71_RS39175 0.35 -1.5 2,166,905 - QEN71_RS39175 0.35 +0.0 2,166,966 + QEN71_RS39175 0.44 -0.1 2,167,069 + QEN71_RS39175 0.58 -0.7 2,167,070 - QEN71_RS39175 0.58 +1.4 2,167,079 + QEN71_RS39175 0.60 -1.1 2,167,080 - QEN71_RS39175 0.60 -0.1 2,167,082 - QEN71_RS39175 0.60 -1.6 2,167,243 - QEN71_RS39175 0.83 -0.3 2,167,380 + +0.1 2,167,381 - -0.4 2,167,430 + +0.4 2,167,430 + +0.2 2,167,430 + -0.3
Or see this region's nucleotide sequence