Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39170

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39160 and QEN71_RS39165 are separated by 178 nucleotidesQEN71_RS39165 and QEN71_RS39170 are separated by 18 nucleotidesQEN71_RS39170 and QEN71_RS39175 are separated by 13 nucleotidesQEN71_RS39175 and QEN71_RS39180 are separated by 65 nucleotides QEN71_RS39160: QEN71_RS39160 - PLP-dependent aminotransferase family protein, at 2,164,100 to 2,165,509 _RS39160 QEN71_RS39165: QEN71_RS39165 - NAD(P)H-dependent oxidoreductase, at 2,165,688 to 2,166,338 _RS39165 QEN71_RS39170: QEN71_RS39170 - DUF3331 domain-containing protein, at 2,166,357 to 2,166,641 _RS39170 QEN71_RS39175: QEN71_RS39175 - SDR family oxidoreductase, at 2,166,655 to 2,167,365 _RS39175 QEN71_RS39180: QEN71_RS39180 - AraC family transcriptional regulator, at 2,167,431 to 2,168,387 _RS39180 Position (kb) 2166 2167Strain fitness (log2 ratio) -2 -1 0 1at 2165.423 kb on + strandat 2165.594 kb on + strandat 2165.793 kb on - strand, within QEN71_RS39165at 2165.824 kb on + strand, within QEN71_RS39165at 2166.306 kb on - strandat 2166.467 kb on - strand, within QEN71_RS39170at 2166.640 kb on - strandat 2166.646 kb on + strandat 2166.649 kb on + strandat 2166.649 kb on + strandat 2166.650 kb on - strandat 2166.650 kb on - strandat 2166.654 kb on + strandat 2166.904 kb on + strand, within QEN71_RS39175at 2166.905 kb on - strand, within QEN71_RS39175at 2166.966 kb on + strand, within QEN71_RS39175at 2167.069 kb on + strand, within QEN71_RS39175at 2167.070 kb on - strand, within QEN71_RS39175at 2167.079 kb on + strand, within QEN71_RS39175at 2167.080 kb on - strand, within QEN71_RS39175at 2167.082 kb on - strand, within QEN71_RS39175at 2167.243 kb on - strand, within QEN71_RS39175at 2167.380 kb on + strandat 2167.381 kb on - strandat 2167.430 kb on + strandat 2167.430 kb on + strandat 2167.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,165,423 + +0.5
2,165,594 + -0.6
2,165,793 - QEN71_RS39165 0.16 +0.9
2,165,824 + QEN71_RS39165 0.21 +1.0
2,166,306 - -0.6
2,166,467 - QEN71_RS39170 0.39 -1.8
2,166,640 - -2.7
2,166,646 + -0.1
2,166,649 + -1.9
2,166,649 + -0.5
2,166,650 - +0.1
2,166,650 - -0.9
2,166,654 + -0.1
2,166,904 + QEN71_RS39175 0.35 -1.5
2,166,905 - QEN71_RS39175 0.35 +0.0
2,166,966 + QEN71_RS39175 0.44 -0.1
2,167,069 + QEN71_RS39175 0.58 -0.7
2,167,070 - QEN71_RS39175 0.58 +1.4
2,167,079 + QEN71_RS39175 0.60 -1.1
2,167,080 - QEN71_RS39175 0.60 -0.1
2,167,082 - QEN71_RS39175 0.60 -1.6
2,167,243 - QEN71_RS39175 0.83 -0.3
2,167,380 + +0.1
2,167,381 - -0.4
2,167,430 + +0.4
2,167,430 + +0.2
2,167,430 + -0.3

Or see this region's nucleotide sequence