Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37805

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37800 and QEN71_RS37805 are separated by 32 nucleotidesQEN71_RS37805 and QEN71_RS37810 are separated by 30 nucleotides QEN71_RS37800: QEN71_RS37800 - sulfite reductase subunit alpha, at 1,846,670 to 1,850,833 _RS37800 QEN71_RS37805: QEN71_RS37805 - nitrite reductase small subunit NirD, at 1,850,866 to 1,851,213 _RS37805 QEN71_RS37810: QEN71_RS37810 - nitrite reductase large subunit NirB, at 1,851,244 to 1,853,808 _RS37810 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -1 0 1at 1850.395 kb on + strand, within QEN71_RS37800at 1850.396 kb on - strand, within QEN71_RS37800at 1850.397 kb on + strand, within QEN71_RS37800at 1850.398 kb on - strand, within QEN71_RS37800at 1850.487 kb on + strandat 1850.976 kb on - strand, within QEN71_RS37805at 1850.976 kb on - strand, within QEN71_RS37805at 1851.074 kb on + strand, within QEN71_RS37805at 1851.113 kb on - strand, within QEN71_RS37805at 1851.452 kb on + strandat 1851.464 kb on - strandat 1851.533 kb on + strand, within QEN71_RS37810at 1851.602 kb on + strand, within QEN71_RS37810at 1851.603 kb on - strand, within QEN71_RS37810at 1851.603 kb on - strand, within QEN71_RS37810at 1851.624 kb on + strand, within QEN71_RS37810at 1852.128 kb on - strand, within QEN71_RS37810

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,850,395 + QEN71_RS37800 0.89 -0.9
1,850,396 - QEN71_RS37800 0.89 -0.4
1,850,397 + QEN71_RS37800 0.90 -1.0
1,850,398 - QEN71_RS37800 0.90 +0.5
1,850,487 + +1.7
1,850,976 - QEN71_RS37805 0.32 -1.3
1,850,976 - QEN71_RS37805 0.32 -1.0
1,851,074 + QEN71_RS37805 0.60 -0.1
1,851,113 - QEN71_RS37805 0.71 -1.4
1,851,452 + -1.5
1,851,464 - +0.0
1,851,533 + QEN71_RS37810 0.11 +1.2
1,851,602 + QEN71_RS37810 0.14 -0.6
1,851,603 - QEN71_RS37810 0.14 +0.8
1,851,603 - QEN71_RS37810 0.14 -0.3
1,851,624 + QEN71_RS37810 0.15 -0.2
1,852,128 - QEN71_RS37810 0.34 +1.2

Or see this region's nucleotide sequence