Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37085

Experiment: D,L-Malic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS37075 and QEN71_RS37080 are separated by 75 nucleotidesQEN71_RS37080 and QEN71_RS37085 are separated by 105 nucleotidesQEN71_RS37085 and QEN71_RS37090 are separated by 22 nucleotidesQEN71_RS37090 and QEN71_RS37095 are separated by 19 nucleotides QEN71_RS37075: QEN71_RS37075 - MFS transporter, at 1,686,876 to 1,688,225 _RS37075 QEN71_RS37080: QEN71_RS37080 - carboxymuconolactone decarboxylase family protein, at 1,688,301 to 1,688,696 _RS37080 QEN71_RS37085: QEN71_RS37085 - aldehyde dehydrogenase family protein, at 1,688,802 to 1,689,986 _RS37085 QEN71_RS37090: QEN71_RS37090 - NAD(P)-dependent oxidoreductase, at 1,690,009 to 1,690,896 _RS37090 QEN71_RS37095: QEN71_RS37095 - NIPSNAP family protein, at 1,690,916 to 1,691,242 _RS37095 Position (kb) 1688 1689 1690Strain fitness (log2 ratio) -2 -1 0 1at 1688.105 kb on - strandat 1688.105 kb on - strandat 1688.196 kb on + strandat 1688.894 kb on - strandat 1688.968 kb on - strand, within QEN71_RS37085at 1689.020 kb on - strand, within QEN71_RS37085at 1689.070 kb on + strand, within QEN71_RS37085at 1689.170 kb on + strand, within QEN71_RS37085at 1689.466 kb on + strand, within QEN71_RS37085at 1689.467 kb on - strand, within QEN71_RS37085at 1689.964 kb on + strandat 1689.965 kb on - strandat 1689.965 kb on - strandat 1690.243 kb on - strand, within QEN71_RS37090at 1690.358 kb on + strand, within QEN71_RS37090at 1690.358 kb on + strand, within QEN71_RS37090at 1690.359 kb on - strand, within QEN71_RS37090at 1690.638 kb on + strand, within QEN71_RS37090at 1690.638 kb on + strand, within QEN71_RS37090at 1690.910 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
remove
1,688,105 - -0.1
1,688,105 - -0.2
1,688,196 + -0.9
1,688,894 - -0.3
1,688,968 - QEN71_RS37085 0.14 -0.5
1,689,020 - QEN71_RS37085 0.18 -2.1
1,689,070 + QEN71_RS37085 0.23 -1.7
1,689,170 + QEN71_RS37085 0.31 -0.3
1,689,466 + QEN71_RS37085 0.56 -1.2
1,689,467 - QEN71_RS37085 0.56 -0.6
1,689,964 + -2.0
1,689,965 - -0.2
1,689,965 - -1.8
1,690,243 - QEN71_RS37090 0.26 -0.7
1,690,358 + QEN71_RS37090 0.39 -2.1
1,690,358 + QEN71_RS37090 0.39 -1.9
1,690,359 - QEN71_RS37090 0.39 -0.1
1,690,638 + QEN71_RS37090 0.71 -1.1
1,690,638 + QEN71_RS37090 0.71 +0.4
1,690,910 + -0.2

Or see this region's nucleotide sequence