Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS37075 and QEN71_RS37080 are separated by 75 nucleotides QEN71_RS37080 and QEN71_RS37085 are separated by 105 nucleotides QEN71_RS37085 and QEN71_RS37090 are separated by 22 nucleotides QEN71_RS37090 and QEN71_RS37095 are separated by 19 nucleotides
QEN71_RS37075: QEN71_RS37075 - MFS transporter, at 1,686,876 to 1,688,225
_RS37075
QEN71_RS37080: QEN71_RS37080 - carboxymuconolactone decarboxylase family protein, at 1,688,301 to 1,688,696
_RS37080
QEN71_RS37085: QEN71_RS37085 - aldehyde dehydrogenase family protein, at 1,688,802 to 1,689,986
_RS37085
QEN71_RS37090: QEN71_RS37090 - NAD(P)-dependent oxidoreductase, at 1,690,009 to 1,690,896
_RS37090
QEN71_RS37095: QEN71_RS37095 - NIPSNAP family protein, at 1,690,916 to 1,691,242
_RS37095
Position (kb)
1688
1689
1690 Strain fitness (log2 ratio)
-2
-1
0
1 at 1688.105 kb on - strand at 1688.105 kb on - strand at 1688.196 kb on + strand at 1688.894 kb on - strand at 1688.968 kb on - strand, within QEN71_RS37085 at 1689.020 kb on - strand, within QEN71_RS37085 at 1689.070 kb on + strand, within QEN71_RS37085 at 1689.170 kb on + strand, within QEN71_RS37085 at 1689.466 kb on + strand, within QEN71_RS37085 at 1689.467 kb on - strand, within QEN71_RS37085 at 1689.964 kb on + strand at 1689.965 kb on - strand at 1689.965 kb on - strand at 1690.243 kb on - strand, within QEN71_RS37090 at 1690.358 kb on + strand, within QEN71_RS37090 at 1690.358 kb on + strand, within QEN71_RS37090 at 1690.359 kb on - strand, within QEN71_RS37090 at 1690.638 kb on + strand, within QEN71_RS37090 at 1690.638 kb on + strand, within QEN71_RS37090 at 1690.910 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,688,105 - -0.1 1,688,105 - -0.2 1,688,196 + -0.9 1,688,894 - -0.3 1,688,968 - QEN71_RS37085 0.14 -0.5 1,689,020 - QEN71_RS37085 0.18 -2.1 1,689,070 + QEN71_RS37085 0.23 -1.7 1,689,170 + QEN71_RS37085 0.31 -0.3 1,689,466 + QEN71_RS37085 0.56 -1.2 1,689,467 - QEN71_RS37085 0.56 -0.6 1,689,964 + -2.0 1,689,965 - -0.2 1,689,965 - -1.8 1,690,243 - QEN71_RS37090 0.26 -0.7 1,690,358 + QEN71_RS37090 0.39 -2.1 1,690,358 + QEN71_RS37090 0.39 -1.9 1,690,359 - QEN71_RS37090 0.39 -0.1 1,690,638 + QEN71_RS37090 0.71 -1.1 1,690,638 + QEN71_RS37090 0.71 +0.4 1,690,910 + -0.2
Or see this region's nucleotide sequence