Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36405 and QEN71_RS36410 are separated by 10 nucleotides QEN71_RS36410 and QEN71_RS36415 are separated by 25 nucleotides QEN71_RS36415 and QEN71_RS36420 are separated by 0 nucleotides
QEN71_RS36405: QEN71_RS36405 - FAD-binding oxidoreductase, at 1,550,285 to 1,551,472
_RS36405
QEN71_RS36410: QEN71_RS36410 - HutD family protein, at 1,551,483 to 1,552,070
_RS36410
QEN71_RS36415: QEN71_RS36415 - electron transfer flavoprotein subunit beta/FixA family protein, at 1,552,096 to 1,552,845
_RS36415
QEN71_RS36420: QEN71_RS36420 - electron transfer flavoprotein subunit alpha/FixB family protein, at 1,552,846 to 1,553,772
_RS36420
Position (kb)
1551
1552
1553 Strain fitness (log2 ratio)
-1
0
1
2 at 1550.510 kb on + strand, within QEN71_RS36405 at 1550.511 kb on - strand, within QEN71_RS36405 at 1550.555 kb on + strand, within QEN71_RS36405 at 1550.555 kb on + strand, within QEN71_RS36405 at 1550.556 kb on - strand, within QEN71_RS36405 at 1550.556 kb on - strand, within QEN71_RS36405 at 1550.565 kb on + strand, within QEN71_RS36405 at 1550.677 kb on + strand, within QEN71_RS36405 at 1550.677 kb on + strand, within QEN71_RS36405 at 1550.678 kb on - strand, within QEN71_RS36405 at 1550.741 kb on + strand, within QEN71_RS36405 at 1550.741 kb on + strand, within QEN71_RS36405 at 1550.742 kb on - strand, within QEN71_RS36405 at 1550.742 kb on - strand, within QEN71_RS36405 at 1550.850 kb on + strand, within QEN71_RS36405 at 1551.001 kb on + strand, within QEN71_RS36405 at 1551.002 kb on - strand, within QEN71_RS36405 at 1551.050 kb on + strand, within QEN71_RS36405 at 1551.051 kb on - strand, within QEN71_RS36405 at 1551.063 kb on - strand, within QEN71_RS36405 at 1551.063 kb on - strand, within QEN71_RS36405 at 1551.152 kb on + strand, within QEN71_RS36405 at 1551.152 kb on + strand, within QEN71_RS36405 at 1551.152 kb on + strand, within QEN71_RS36405 at 1551.153 kb on - strand, within QEN71_RS36405 at 1551.236 kb on + strand, within QEN71_RS36405 at 1551.236 kb on + strand, within QEN71_RS36405 at 1551.236 kb on + strand, within QEN71_RS36405 at 1551.390 kb on + strand at 1551.391 kb on - strand at 1551.391 kb on - strand at 1551.449 kb on + strand at 1551.450 kb on - strand at 1551.638 kb on + strand, within QEN71_RS36410 at 1551.913 kb on + strand, within QEN71_RS36410 at 1552.104 kb on - strand at 1552.843 kb on + strand at 1552.844 kb on - strand at 1552.943 kb on + strand, within QEN71_RS36420 at 1552.943 kb on + strand, within QEN71_RS36420 at 1552.944 kb on - strand, within QEN71_RS36420
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,550,510 + QEN71_RS36405 0.19 +0.7 1,550,511 - QEN71_RS36405 0.19 +0.1 1,550,555 + QEN71_RS36405 0.23 +1.8 1,550,555 + QEN71_RS36405 0.23 -0.1 1,550,556 - QEN71_RS36405 0.23 -0.3 1,550,556 - QEN71_RS36405 0.23 +0.4 1,550,565 + QEN71_RS36405 0.24 +0.7 1,550,677 + QEN71_RS36405 0.33 -0.9 1,550,677 + QEN71_RS36405 0.33 +0.3 1,550,678 - QEN71_RS36405 0.33 +0.9 1,550,741 + QEN71_RS36405 0.38 -0.2 1,550,741 + QEN71_RS36405 0.38 +1.1 1,550,742 - QEN71_RS36405 0.38 +0.3 1,550,742 - QEN71_RS36405 0.38 +1.2 1,550,850 + QEN71_RS36405 0.48 -0.1 1,551,001 + QEN71_RS36405 0.60 -0.2 1,551,002 - QEN71_RS36405 0.60 +0.8 1,551,050 + QEN71_RS36405 0.64 -0.5 1,551,051 - QEN71_RS36405 0.64 -1.1 1,551,063 - QEN71_RS36405 0.65 +0.4 1,551,063 - QEN71_RS36405 0.65 +0.3 1,551,152 + QEN71_RS36405 0.73 -0.4 1,551,152 + QEN71_RS36405 0.73 +1.5 1,551,152 + QEN71_RS36405 0.73 -0.7 1,551,153 - QEN71_RS36405 0.73 +0.3 1,551,236 + QEN71_RS36405 0.80 +1.4 1,551,236 + QEN71_RS36405 0.80 -0.0 1,551,236 + QEN71_RS36405 0.80 +1.9 1,551,390 + +0.0 1,551,391 - +0.0 1,551,391 - +0.4 1,551,449 + -1.2 1,551,450 - -0.1 1,551,638 + QEN71_RS36410 0.26 -1.7 1,551,913 + QEN71_RS36410 0.73 -0.2 1,552,104 - -0.7 1,552,843 + -0.7 1,552,844 - -1.0 1,552,943 + QEN71_RS36420 0.10 +0.2 1,552,943 + QEN71_RS36420 0.10 -0.5 1,552,944 - QEN71_RS36420 0.11 -1.2
Or see this region's nucleotide sequence