Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36410

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36405 and QEN71_RS36410 are separated by 10 nucleotidesQEN71_RS36410 and QEN71_RS36415 are separated by 25 nucleotidesQEN71_RS36415 and QEN71_RS36420 are separated by 0 nucleotides QEN71_RS36405: QEN71_RS36405 - FAD-binding oxidoreductase, at 1,550,285 to 1,551,472 _RS36405 QEN71_RS36410: QEN71_RS36410 - HutD family protein, at 1,551,483 to 1,552,070 _RS36410 QEN71_RS36415: QEN71_RS36415 - electron transfer flavoprotein subunit beta/FixA family protein, at 1,552,096 to 1,552,845 _RS36415 QEN71_RS36420: QEN71_RS36420 - electron transfer flavoprotein subunit alpha/FixB family protein, at 1,552,846 to 1,553,772 _RS36420 Position (kb) 1551 1552 1553Strain fitness (log2 ratio) -1 0 1 2at 1550.510 kb on + strand, within QEN71_RS36405at 1550.511 kb on - strand, within QEN71_RS36405at 1550.555 kb on + strand, within QEN71_RS36405at 1550.555 kb on + strand, within QEN71_RS36405at 1550.556 kb on - strand, within QEN71_RS36405at 1550.556 kb on - strand, within QEN71_RS36405at 1550.565 kb on + strand, within QEN71_RS36405at 1550.677 kb on + strand, within QEN71_RS36405at 1550.677 kb on + strand, within QEN71_RS36405at 1550.678 kb on - strand, within QEN71_RS36405at 1550.741 kb on + strand, within QEN71_RS36405at 1550.741 kb on + strand, within QEN71_RS36405at 1550.742 kb on - strand, within QEN71_RS36405at 1550.742 kb on - strand, within QEN71_RS36405at 1550.850 kb on + strand, within QEN71_RS36405at 1551.001 kb on + strand, within QEN71_RS36405at 1551.002 kb on - strand, within QEN71_RS36405at 1551.050 kb on + strand, within QEN71_RS36405at 1551.051 kb on - strand, within QEN71_RS36405at 1551.063 kb on - strand, within QEN71_RS36405at 1551.063 kb on - strand, within QEN71_RS36405at 1551.152 kb on + strand, within QEN71_RS36405at 1551.152 kb on + strand, within QEN71_RS36405at 1551.152 kb on + strand, within QEN71_RS36405at 1551.153 kb on - strand, within QEN71_RS36405at 1551.236 kb on + strand, within QEN71_RS36405at 1551.236 kb on + strand, within QEN71_RS36405at 1551.236 kb on + strand, within QEN71_RS36405at 1551.390 kb on + strandat 1551.391 kb on - strandat 1551.391 kb on - strandat 1551.449 kb on + strandat 1551.450 kb on - strandat 1551.638 kb on + strand, within QEN71_RS36410at 1551.913 kb on + strand, within QEN71_RS36410at 1552.104 kb on - strandat 1552.843 kb on + strandat 1552.844 kb on - strandat 1552.943 kb on + strand, within QEN71_RS36420at 1552.943 kb on + strand, within QEN71_RS36420at 1552.944 kb on - strand, within QEN71_RS36420

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,550,510 + QEN71_RS36405 0.19 +0.7
1,550,511 - QEN71_RS36405 0.19 +0.1
1,550,555 + QEN71_RS36405 0.23 +1.8
1,550,555 + QEN71_RS36405 0.23 -0.1
1,550,556 - QEN71_RS36405 0.23 -0.3
1,550,556 - QEN71_RS36405 0.23 +0.4
1,550,565 + QEN71_RS36405 0.24 +0.7
1,550,677 + QEN71_RS36405 0.33 -0.9
1,550,677 + QEN71_RS36405 0.33 +0.3
1,550,678 - QEN71_RS36405 0.33 +0.9
1,550,741 + QEN71_RS36405 0.38 -0.2
1,550,741 + QEN71_RS36405 0.38 +1.1
1,550,742 - QEN71_RS36405 0.38 +0.3
1,550,742 - QEN71_RS36405 0.38 +1.2
1,550,850 + QEN71_RS36405 0.48 -0.1
1,551,001 + QEN71_RS36405 0.60 -0.2
1,551,002 - QEN71_RS36405 0.60 +0.8
1,551,050 + QEN71_RS36405 0.64 -0.5
1,551,051 - QEN71_RS36405 0.64 -1.1
1,551,063 - QEN71_RS36405 0.65 +0.4
1,551,063 - QEN71_RS36405 0.65 +0.3
1,551,152 + QEN71_RS36405 0.73 -0.4
1,551,152 + QEN71_RS36405 0.73 +1.5
1,551,152 + QEN71_RS36405 0.73 -0.7
1,551,153 - QEN71_RS36405 0.73 +0.3
1,551,236 + QEN71_RS36405 0.80 +1.4
1,551,236 + QEN71_RS36405 0.80 -0.0
1,551,236 + QEN71_RS36405 0.80 +1.9
1,551,390 + +0.0
1,551,391 - +0.0
1,551,391 - +0.4
1,551,449 + -1.2
1,551,450 - -0.1
1,551,638 + QEN71_RS36410 0.26 -1.7
1,551,913 + QEN71_RS36410 0.73 -0.2
1,552,104 - -0.7
1,552,843 + -0.7
1,552,844 - -1.0
1,552,943 + QEN71_RS36420 0.10 +0.2
1,552,943 + QEN71_RS36420 0.10 -0.5
1,552,944 - QEN71_RS36420 0.11 -1.2

Or see this region's nucleotide sequence