Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36360 and QEN71_RS36365 are separated by 62 nucleotides QEN71_RS36365 and QEN71_RS36370 are separated by 39 nucleotides QEN71_RS36370 and QEN71_RS36375 are separated by 19 nucleotides
QEN71_RS36360: QEN71_RS36360 - lysine 2,3-aminomutase, at 1,540,328 to 1,541,734
_RS36360
QEN71_RS36365: QEN71_RS36365 - ferredoxin family protein, at 1,541,797 to 1,542,138
_RS36365
QEN71_RS36370: QEN71_RS36370 - DUF1330 domain-containing protein, at 1,542,178 to 1,542,471
_RS36370
QEN71_RS36375: QEN71_RS36375 - Ldh family oxidoreductase, at 1,542,491 to 1,543,471
_RS36375
Position (kb) 1542
1543 Strain fitness (log2 ratio) -2
-1
0
1 at 1541.278 kb on - strand, within QEN71_RS36360 at 1541.301 kb on - strand, within QEN71_RS36360 at 1541.804 kb on - strand at 1541.862 kb on + strand, within QEN71_RS36365 at 1542.105 kb on - strand at 1542.377 kb on + strand, within QEN71_RS36370 at 1542.411 kb on - strand, within QEN71_RS36370 at 1542.516 kb on + strand at 1542.517 kb on - strand at 1542.577 kb on + strand at 1543.104 kb on + strand, within QEN71_RS36375 at 1543.161 kb on + strand, within QEN71_RS36375 at 1543.162 kb on - strand, within QEN71_RS36375 at 1543.162 kb on - strand, within QEN71_RS36375 at 1543.179 kb on - strand, within QEN71_RS36375 at 1543.179 kb on - strand, within QEN71_RS36375 at 1543.203 kb on + strand, within QEN71_RS36375 at 1543.203 kb on + strand, within QEN71_RS36375 at 1543.464 kb on + strand at 1543.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,541,278 - QEN71_RS36360 0.68 -0.2 1,541,301 - QEN71_RS36360 0.69 -0.5 1,541,804 - +1.1 1,541,862 + QEN71_RS36365 0.19 +0.0 1,542,105 - -2.2 1,542,377 + QEN71_RS36370 0.68 +0.9 1,542,411 - QEN71_RS36370 0.79 +0.0 1,542,516 + -0.3 1,542,517 - -0.9 1,542,577 + -0.7 1,543,104 + QEN71_RS36375 0.62 -0.5 1,543,161 + QEN71_RS36375 0.68 -0.8 1,543,162 - QEN71_RS36375 0.68 +0.0 1,543,162 - QEN71_RS36375 0.68 +0.3 1,543,179 - QEN71_RS36375 0.70 -0.0 1,543,179 - QEN71_RS36375 0.70 +1.4 1,543,203 + QEN71_RS36375 0.73 -0.1 1,543,203 + QEN71_RS36375 0.73 +0.3 1,543,464 + +0.2 1,543,464 + -0.3
Or see this region's nucleotide sequence