Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS33170

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS33160 and QEN71_RS33165 overlap by 8 nucleotidesQEN71_RS33165 and QEN71_RS33170 are separated by 3 nucleotidesQEN71_RS33170 and QEN71_RS33175 are separated by 186 nucleotidesQEN71_RS33175 and QEN71_RS33180 are separated by 152 nucleotides QEN71_RS33160: QEN71_RS33160 - OmpA family protein, at 767,498 to 768,145 _RS33160 QEN71_RS33165: QEN71_RS33165 - DUF2894 domain-containing protein, at 768,138 to 768,764 _RS33165 QEN71_RS33170: QEN71_RS33170 - elongation factor G, at 768,768 to 770,813 _RS33170 QEN71_RS33175: QEN71_RS33175 - DsbA family oxidoreductase, at 771,000 to 771,653 _RS33175 QEN71_RS33180: QEN71_RS33180 - cytochrome b/b6 domain-containing protein, at 771,806 to 772,399 _RS33180 Position (kb) 768 769 770 771Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 767.849 kb on + strand, within QEN71_RS33160at 767.849 kb on + strand, within QEN71_RS33160at 767.850 kb on - strand, within QEN71_RS33160at 767.984 kb on - strand, within QEN71_RS33160at 768.144 kb on - strandat 768.315 kb on + strand, within QEN71_RS33165at 768.315 kb on + strand, within QEN71_RS33165at 768.316 kb on - strand, within QEN71_RS33165at 768.316 kb on - strand, within QEN71_RS33165at 768.403 kb on - strand, within QEN71_RS33165at 768.403 kb on - strand, within QEN71_RS33165at 768.484 kb on - strand, within QEN71_RS33165at 768.628 kb on - strand, within QEN71_RS33165at 768.648 kb on + strand, within QEN71_RS33165at 768.649 kb on - strand, within QEN71_RS33165at 768.763 kb on - strandat 768.793 kb on + strandat 768.793 kb on + strandat 768.793 kb on + strandat 768.794 kb on - strandat 768.794 kb on - strandat 768.838 kb on + strandat 768.839 kb on - strandat 768.839 kb on - strandat 768.860 kb on - strandat 768.860 kb on - strandat 768.860 kb on - strandat 768.860 kb on - strandat 769.173 kb on - strand, within QEN71_RS33170at 769.173 kb on - strand, within QEN71_RS33170at 769.300 kb on + strand, within QEN71_RS33170at 769.446 kb on - strand, within QEN71_RS33170at 769.459 kb on + strand, within QEN71_RS33170at 769.459 kb on + strand, within QEN71_RS33170at 769.459 kb on + strand, within QEN71_RS33170at 769.459 kb on + strand, within QEN71_RS33170at 769.596 kb on + strand, within QEN71_RS33170at 769.597 kb on - strand, within QEN71_RS33170at 769.643 kb on - strand, within QEN71_RS33170at 769.643 kb on - strand, within QEN71_RS33170at 769.643 kb on - strand, within QEN71_RS33170at 769.846 kb on + strand, within QEN71_RS33170at 769.846 kb on + strand, within QEN71_RS33170at 769.846 kb on + strand, within QEN71_RS33170at 769.846 kb on + strand, within QEN71_RS33170at 769.846 kb on + strand, within QEN71_RS33170at 769.846 kb on + strand, within QEN71_RS33170at 769.847 kb on - strand, within QEN71_RS33170at 769.847 kb on - strand, within QEN71_RS33170at 769.847 kb on - strand, within QEN71_RS33170at 769.847 kb on - strand, within QEN71_RS33170at 769.847 kb on - strand, within QEN71_RS33170at 769.847 kb on - strand, within QEN71_RS33170at 769.909 kb on + strand, within QEN71_RS33170at 770.006 kb on - strand, within QEN71_RS33170at 770.191 kb on + strand, within QEN71_RS33170at 770.192 kb on - strand, within QEN71_RS33170at 770.192 kb on - strand, within QEN71_RS33170at 770.192 kb on - strand, within QEN71_RS33170at 770.336 kb on + strand, within QEN71_RS33170at 770.337 kb on - strand, within QEN71_RS33170at 770.337 kb on - strand, within QEN71_RS33170at 770.587 kb on + strand, within QEN71_RS33170at 770.587 kb on + strand, within QEN71_RS33170at 770.587 kb on + strand, within QEN71_RS33170at 770.588 kb on - strand, within QEN71_RS33170at 770.588 kb on - strand, within QEN71_RS33170at 770.605 kb on + strand, within QEN71_RS33170at 770.605 kb on + strand, within QEN71_RS33170at 770.644 kb on + strandat 770.645 kb on - strandat 770.645 kb on - strandat 770.786 kb on + strandat 770.786 kb on + strandat 770.787 kb on - strandat 770.787 kb on - strandat 770.807 kb on - strandat 770.848 kb on + strandat 770.848 kb on + strandat 770.904 kb on + strandat 770.956 kb on + strandat 770.957 kb on - strandat 771.035 kb on + strandat 771.036 kb on - strandat 771.073 kb on + strand, within QEN71_RS33175at 771.073 kb on + strand, within QEN71_RS33175at 771.180 kb on + strand, within QEN71_RS33175at 771.180 kb on + strand, within QEN71_RS33175at 771.180 kb on + strand, within QEN71_RS33175at 771.195 kb on + strand, within QEN71_RS33175at 771.267 kb on - strand, within QEN71_RS33175at 771.267 kb on - strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.292 kb on - strand, within QEN71_RS33175at 771.292 kb on - strand, within QEN71_RS33175at 771.332 kb on + strand, within QEN71_RS33175at 771.378 kb on + strand, within QEN71_RS33175at 771.455 kb on + strand, within QEN71_RS33175at 771.486 kb on + strand, within QEN71_RS33175at 771.520 kb on - strand, within QEN71_RS33175at 771.520 kb on - strand, within QEN71_RS33175at 771.520 kb on - strand, within QEN71_RS33175at 771.651 kb on + strandat 771.715 kb on + strandat 771.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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767,849 + QEN71_RS33160 0.54 -3.5
767,849 + QEN71_RS33160 0.54 -0.2
767,850 - QEN71_RS33160 0.54 -0.0
767,984 - QEN71_RS33160 0.75 +0.2
768,144 - -2.6
768,315 + QEN71_RS33165 0.28 -0.6
768,315 + QEN71_RS33165 0.28 -0.2
768,316 - QEN71_RS33165 0.28 +0.1
768,316 - QEN71_RS33165 0.28 -0.9
768,403 - QEN71_RS33165 0.42 -0.5
768,403 - QEN71_RS33165 0.42 -1.1
768,484 - QEN71_RS33165 0.55 +0.2
768,628 - QEN71_RS33165 0.78 -1.1
768,648 + QEN71_RS33165 0.81 +0.2
768,649 - QEN71_RS33165 0.81 -1.8
768,763 - -1.3
768,793 + -2.1
768,793 + +0.2
768,793 + -0.0
768,794 - -0.1
768,794 - +0.2
768,838 + +0.8
768,839 - -0.4
768,839 - +0.6
768,860 - -1.2
768,860 - +0.6
768,860 - -0.2
768,860 - +0.9
769,173 - QEN71_RS33170 0.20 +0.0
769,173 - QEN71_RS33170 0.20 -2.8
769,300 + QEN71_RS33170 0.26 -0.3
769,446 - QEN71_RS33170 0.33 -0.4
769,459 + QEN71_RS33170 0.34 -0.2
769,459 + QEN71_RS33170 0.34 -0.8
769,459 + QEN71_RS33170 0.34 -0.6
769,459 + QEN71_RS33170 0.34 +0.2
769,596 + QEN71_RS33170 0.40 +0.0
769,597 - QEN71_RS33170 0.41 -0.1
769,643 - QEN71_RS33170 0.43 +0.3
769,643 - QEN71_RS33170 0.43 +0.2
769,643 - QEN71_RS33170 0.43 +0.8
769,846 + QEN71_RS33170 0.53 +0.2
769,846 + QEN71_RS33170 0.53 +0.3
769,846 + QEN71_RS33170 0.53 +0.0
769,846 + QEN71_RS33170 0.53 -0.1
769,846 + QEN71_RS33170 0.53 +0.2
769,846 + QEN71_RS33170 0.53 +0.7
769,847 - QEN71_RS33170 0.53 -0.4
769,847 - QEN71_RS33170 0.53 +0.2
769,847 - QEN71_RS33170 0.53 -0.9
769,847 - QEN71_RS33170 0.53 +0.3
769,847 - QEN71_RS33170 0.53 -0.3
769,847 - QEN71_RS33170 0.53 +0.0
769,909 + QEN71_RS33170 0.56 +0.3
770,006 - QEN71_RS33170 0.61 +2.0
770,191 + QEN71_RS33170 0.70 +0.2
770,192 - QEN71_RS33170 0.70 +0.2
770,192 - QEN71_RS33170 0.70 -1.6
770,192 - QEN71_RS33170 0.70 -0.1
770,336 + QEN71_RS33170 0.77 -0.6
770,337 - QEN71_RS33170 0.77 -0.5
770,337 - QEN71_RS33170 0.77 +0.7
770,587 + QEN71_RS33170 0.89 +0.1
770,587 + QEN71_RS33170 0.89 +0.1
770,587 + QEN71_RS33170 0.89 +0.4
770,588 - QEN71_RS33170 0.89 -0.0
770,588 - QEN71_RS33170 0.89 -0.4
770,605 + QEN71_RS33170 0.90 -2.4
770,605 + QEN71_RS33170 0.90 -0.7
770,644 + -1.0
770,645 - -0.1
770,645 - +0.5
770,786 + -0.6
770,786 + -0.5
770,787 - +0.8
770,787 - -1.0
770,807 - +0.4
770,848 + -0.0
770,848 + +1.8
770,904 + -1.1
770,956 + -0.2
770,957 - -2.0
771,035 + -1.0
771,036 - +0.2
771,073 + QEN71_RS33175 0.11 -1.0
771,073 + QEN71_RS33175 0.11 -0.8
771,180 + QEN71_RS33175 0.28 -1.0
771,180 + QEN71_RS33175 0.28 -1.9
771,180 + QEN71_RS33175 0.28 +0.4
771,195 + QEN71_RS33175 0.30 +0.4
771,267 - QEN71_RS33175 0.41 +0.7
771,267 - QEN71_RS33175 0.41 +0.3
771,285 + QEN71_RS33175 0.44 -2.1
771,285 + QEN71_RS33175 0.44 -0.4
771,285 + QEN71_RS33175 0.44 +1.7
771,285 + QEN71_RS33175 0.44 +0.1
771,285 + QEN71_RS33175 0.44 -0.4
771,286 - QEN71_RS33175 0.44 -0.2
771,286 - QEN71_RS33175 0.44 +0.2
771,286 - QEN71_RS33175 0.44 -0.6
771,286 - QEN71_RS33175 0.44 -2.2
771,286 - QEN71_RS33175 0.44 -1.0
771,286 - QEN71_RS33175 0.44 -0.2
771,286 - QEN71_RS33175 0.44 -0.4
771,291 + QEN71_RS33175 0.44 +1.5
771,291 + QEN71_RS33175 0.44 -0.5
771,291 + QEN71_RS33175 0.44 -0.6
771,291 + QEN71_RS33175 0.44 -0.5
771,292 - QEN71_RS33175 0.45 -0.1
771,292 - QEN71_RS33175 0.45 +0.3
771,332 + QEN71_RS33175 0.51 -0.3
771,378 + QEN71_RS33175 0.58 -2.4
771,455 + QEN71_RS33175 0.70 +0.3
771,486 + QEN71_RS33175 0.74 -0.6
771,520 - QEN71_RS33175 0.80 +0.2
771,520 - QEN71_RS33175 0.80 -0.6
771,520 - QEN71_RS33175 0.80 +0.7
771,651 + -0.9
771,715 + +0.5
771,716 - -0.2

Or see this region's nucleotide sequence