Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32525 and QEN71_RS32530 are separated by 239 nucleotides QEN71_RS32530 and QEN71_RS32535 are separated by 217 nucleotides
QEN71_RS32525: QEN71_RS32525 - porin, at 635,210 to 636,361
_RS32525
QEN71_RS32530: QEN71_RS32530 - flagellin domain-containing protein, at 636,601 to 637,419
_RS32530
QEN71_RS32535: QEN71_RS32535 - GGDEF domain-containing protein, at 637,637 to 638,767
_RS32535
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1
2 at 635.687 kb on + strand, within QEN71_RS32525 at 635.687 kb on + strand, within QEN71_RS32525 at 635.687 kb on + strand, within QEN71_RS32525 at 635.774 kb on + strand, within QEN71_RS32525 at 635.774 kb on + strand, within QEN71_RS32525 at 635.775 kb on - strand, within QEN71_RS32525 at 635.775 kb on - strand, within QEN71_RS32525 at 635.775 kb on - strand, within QEN71_RS32525 at 635.775 kb on - strand, within QEN71_RS32525 at 635.775 kb on - strand, within QEN71_RS32525 at 635.775 kb on - strand, within QEN71_RS32525 at 635.922 kb on - strand, within QEN71_RS32525 at 635.999 kb on + strand, within QEN71_RS32525 at 636.056 kb on + strand, within QEN71_RS32525 at 636.125 kb on + strand, within QEN71_RS32525 at 636.126 kb on - strand, within QEN71_RS32525 at 636.146 kb on - strand, within QEN71_RS32525 at 636.158 kb on + strand, within QEN71_RS32525 at 636.185 kb on + strand, within QEN71_RS32525 at 636.185 kb on + strand, within QEN71_RS32525 at 636.299 kb on + strand at 636.394 kb on + strand at 636.459 kb on - strand at 636.870 kb on + strand, within QEN71_RS32530 at 636.871 kb on - strand, within QEN71_RS32530 at 637.430 kb on + strand at 637.430 kb on + strand at 637.431 kb on - strand at 637.431 kb on - strand at 637.505 kb on + strand at 637.505 kb on + strand at 637.505 kb on + strand at 637.505 kb on + strand at 637.505 kb on + strand at 637.506 kb on - strand at 637.506 kb on - strand at 637.506 kb on - strand at 637.506 kb on - strand at 637.506 kb on - strand at 637.603 kb on + strand at 637.604 kb on - strand at 637.604 kb on - strand at 637.895 kb on - strand, within QEN71_RS32535 at 638.003 kb on + strand, within QEN71_RS32535 at 638.004 kb on - strand, within QEN71_RS32535 at 638.004 kb on - strand, within QEN71_RS32535 at 638.004 kb on - strand, within QEN71_RS32535 at 638.004 kb on - strand, within QEN71_RS32535 at 638.004 kb on - strand, within QEN71_RS32535 at 638.082 kb on + strand, within QEN71_RS32535 at 638.082 kb on + strand, within QEN71_RS32535 at 638.082 kb on + strand, within QEN71_RS32535 at 638.177 kb on + strand, within QEN71_RS32535 at 638.177 kb on + strand, within QEN71_RS32535 at 638.178 kb on - strand, within QEN71_RS32535 at 638.417 kb on + strand, within QEN71_RS32535 at 638.417 kb on + strand, within QEN71_RS32535 at 638.417 kb on + strand, within QEN71_RS32535 at 638.417 kb on + strand, within QEN71_RS32535 at 638.417 kb on + strand, within QEN71_RS32535 at 638.417 kb on + strand, within QEN71_RS32535 at 638.417 kb on + strand, within QEN71_RS32535 at 638.417 kb on + strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535 at 638.418 kb on - strand, within QEN71_RS32535
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 635,687 + QEN71_RS32525 0.41 +0.6 635,687 + QEN71_RS32525 0.41 +2.2 635,687 + QEN71_RS32525 0.41 +0.3 635,774 + QEN71_RS32525 0.49 -0.1 635,774 + QEN71_RS32525 0.49 -0.2 635,775 - QEN71_RS32525 0.49 +1.2 635,775 - QEN71_RS32525 0.49 +0.0 635,775 - QEN71_RS32525 0.49 -0.7 635,775 - QEN71_RS32525 0.49 -1.9 635,775 - QEN71_RS32525 0.49 -2.0 635,775 - QEN71_RS32525 0.49 +0.4 635,922 - QEN71_RS32525 0.62 -1.7 635,999 + QEN71_RS32525 0.68 -0.4 636,056 + QEN71_RS32525 0.73 -0.2 636,125 + QEN71_RS32525 0.79 -0.7 636,126 - QEN71_RS32525 0.80 -0.7 636,146 - QEN71_RS32525 0.81 +0.0 636,158 + QEN71_RS32525 0.82 -0.4 636,185 + QEN71_RS32525 0.85 +0.1 636,185 + QEN71_RS32525 0.85 -0.3 636,299 + +0.0 636,394 + -1.5 636,459 - -0.2 636,870 + QEN71_RS32530 0.33 -1.2 636,871 - QEN71_RS32530 0.33 -1.7 637,430 + -0.6 637,430 + -0.8 637,431 - -0.6 637,431 - +0.3 637,505 + +1.8 637,505 + +1.4 637,505 + +0.4 637,505 + -0.2 637,505 + +0.7 637,506 - -0.6 637,506 - -0.8 637,506 - +0.0 637,506 - +1.2 637,506 - +0.6 637,603 + +0.2 637,604 - -0.3 637,604 - -1.0 637,895 - QEN71_RS32535 0.23 +0.3 638,003 + QEN71_RS32535 0.32 -1.8 638,004 - QEN71_RS32535 0.32 +0.2 638,004 - QEN71_RS32535 0.32 -0.7 638,004 - QEN71_RS32535 0.32 +0.0 638,004 - QEN71_RS32535 0.32 +0.1 638,004 - QEN71_RS32535 0.32 -0.7 638,082 + QEN71_RS32535 0.39 -0.6 638,082 + QEN71_RS32535 0.39 -0.2 638,082 + QEN71_RS32535 0.39 -0.8 638,177 + QEN71_RS32535 0.48 +0.2 638,177 + QEN71_RS32535 0.48 -0.0 638,178 - QEN71_RS32535 0.48 -0.5 638,417 + QEN71_RS32535 0.69 +0.7 638,417 + QEN71_RS32535 0.69 -0.8 638,417 + QEN71_RS32535 0.69 -0.0 638,417 + QEN71_RS32535 0.69 +0.2 638,417 + QEN71_RS32535 0.69 +0.5 638,417 + QEN71_RS32535 0.69 -0.9 638,417 + QEN71_RS32535 0.69 -1.0 638,417 + QEN71_RS32535 0.69 -0.7 638,418 - QEN71_RS32535 0.69 -1.0 638,418 - QEN71_RS32535 0.69 +0.2 638,418 - QEN71_RS32535 0.69 -1.3 638,418 - QEN71_RS32535 0.69 -0.9 638,418 - QEN71_RS32535 0.69 -0.3 638,418 - QEN71_RS32535 0.69 +0.2 638,418 - QEN71_RS32535 0.69 -0.2 638,418 - QEN71_RS32535 0.69 +0.0 638,418 - QEN71_RS32535 0.69 -0.8 638,418 - QEN71_RS32535 0.69 +0.0
Or see this region's nucleotide sequence