Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31190

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31185 and QEN71_RS31190 are separated by 156 nucleotidesQEN71_RS31190 and QEN71_RS31195 are separated by 144 nucleotides QEN71_RS31185: QEN71_RS31185 - methyl-accepting chemotaxis protein, at 347,468 to 349,192 _RS31185 QEN71_RS31190: QEN71_RS31190 - LysR family transcriptional regulator, at 349,349 to 350,281 _RS31190 QEN71_RS31195: QEN71_RS31195 - MFS transporter, at 350,426 to 351,754 _RS31195 Position (kb) 349 350 351Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 348.401 kb on - strand, within QEN71_RS31185at 348.449 kb on + strand, within QEN71_RS31185at 348.450 kb on - strand, within QEN71_RS31185at 348.450 kb on - strand, within QEN71_RS31185at 348.450 kb on - strand, within QEN71_RS31185at 348.816 kb on + strand, within QEN71_RS31185at 348.816 kb on + strand, within QEN71_RS31185at 348.816 kb on + strand, within QEN71_RS31185at 348.816 kb on + strand, within QEN71_RS31185at 348.816 kb on + strand, within QEN71_RS31185at 348.817 kb on - strand, within QEN71_RS31185at 348.817 kb on - strand, within QEN71_RS31185at 348.817 kb on - strand, within QEN71_RS31185at 348.817 kb on - strand, within QEN71_RS31185at 348.995 kb on + strand, within QEN71_RS31185at 348.995 kb on + strand, within QEN71_RS31185at 348.996 kb on - strand, within QEN71_RS31185at 348.996 kb on - strand, within QEN71_RS31185at 348.996 kb on - strand, within QEN71_RS31185at 348.996 kb on - strand, within QEN71_RS31185at 348.996 kb on - strand, within QEN71_RS31185at 349.077 kb on + strandat 349.077 kb on + strandat 349.077 kb on + strandat 349.077 kb on + strandat 349.077 kb on + strandat 349.078 kb on - strandat 349.078 kb on - strandat 349.078 kb on - strandat 349.078 kb on - strandat 349.078 kb on - strandat 349.078 kb on - strandat 349.078 kb on - strandat 349.078 kb on - strandat 349.078 kb on - strandat 349.081 kb on + strandat 349.081 kb on + strandat 349.081 kb on + strandat 349.081 kb on + strandat 349.081 kb on + strandat 349.082 kb on - strandat 349.082 kb on - strandat 349.082 kb on - strandat 349.082 kb on - strandat 349.230 kb on + strandat 349.259 kb on - strandat 349.833 kb on + strand, within QEN71_RS31190at 349.833 kb on + strand, within QEN71_RS31190at 349.833 kb on + strand, within QEN71_RS31190at 349.833 kb on + strand, within QEN71_RS31190at 349.834 kb on - strand, within QEN71_RS31190at 349.923 kb on + strand, within QEN71_RS31190at 349.923 kb on + strand, within QEN71_RS31190at 349.923 kb on + strand, within QEN71_RS31190at 349.924 kb on - strand, within QEN71_RS31190at 349.971 kb on + strand, within QEN71_RS31190at 349.971 kb on + strand, within QEN71_RS31190at 349.971 kb on + strand, within QEN71_RS31190at 349.971 kb on + strand, within QEN71_RS31190at 349.971 kb on + strand, within QEN71_RS31190at 349.972 kb on - strand, within QEN71_RS31190at 349.972 kb on - strand, within QEN71_RS31190at 349.972 kb on - strand, within QEN71_RS31190at 350.009 kb on + strand, within QEN71_RS31190at 350.009 kb on + strand, within QEN71_RS31190at 350.010 kb on - strand, within QEN71_RS31190at 350.010 kb on - strand, within QEN71_RS31190at 350.177 kb on - strand, within QEN71_RS31190at 350.251 kb on - strandat 350.251 kb on - strandat 350.342 kb on + strandat 350.342 kb on + strandat 350.343 kb on - strandat 350.400 kb on - strandat 350.436 kb on + strandat 350.437 kb on - strandat 350.475 kb on - strandat 350.508 kb on + strandat 350.508 kb on + strandat 350.519 kb on + strandat 350.519 kb on + strandat 350.519 kb on + strandat 350.519 kb on + strandat 350.519 kb on + strandat 350.519 kb on + strandat 350.520 kb on - strandat 350.520 kb on - strandat 350.520 kb on - strandat 350.520 kb on - strandat 350.520 kb on - strandat 350.532 kb on - strandat 350.532 kb on - strandat 350.636 kb on + strand, within QEN71_RS31195at 350.636 kb on + strand, within QEN71_RS31195at 350.637 kb on - strand, within QEN71_RS31195at 350.637 kb on - strand, within QEN71_RS31195at 350.637 kb on - strand, within QEN71_RS31195at 350.769 kb on - strand, within QEN71_RS31195at 350.769 kb on - strand, within QEN71_RS31195at 350.769 kb on - strand, within QEN71_RS31195at 350.825 kb on + strand, within QEN71_RS31195at 350.825 kb on + strand, within QEN71_RS31195at 350.825 kb on + strand, within QEN71_RS31195at 350.825 kb on + strand, within QEN71_RS31195at 350.825 kb on + strand, within QEN71_RS31195at 350.825 kb on + strand, within QEN71_RS31195at 350.826 kb on - strand, within QEN71_RS31195at 350.826 kb on - strand, within QEN71_RS31195at 350.826 kb on - strand, within QEN71_RS31195at 350.826 kb on - strand, within QEN71_RS31195at 350.826 kb on - strand, within QEN71_RS31195at 350.826 kb on - strand, within QEN71_RS31195at 350.828 kb on + strand, within QEN71_RS31195at 350.828 kb on + strand, within QEN71_RS31195at 350.829 kb on - strand, within QEN71_RS31195at 350.829 kb on - strand, within QEN71_RS31195at 350.829 kb on - strand, within QEN71_RS31195at 350.829 kb on - strand, within QEN71_RS31195at 350.829 kb on - strand, within QEN71_RS31195at 350.829 kb on - strand, within QEN71_RS31195at 350.829 kb on - strand, within QEN71_RS31195at 350.844 kb on - strand, within QEN71_RS31195at 350.957 kb on + strand, within QEN71_RS31195at 350.957 kb on + strand, within QEN71_RS31195at 350.958 kb on - strand, within QEN71_RS31195at 350.958 kb on - strand, within QEN71_RS31195at 350.958 kb on - strand, within QEN71_RS31195at 350.958 kb on - strand, within QEN71_RS31195at 350.958 kb on - strand, within QEN71_RS31195at 351.164 kb on + strand, within QEN71_RS31195at 351.164 kb on + strand, within QEN71_RS31195at 351.164 kb on + strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.165 kb on - strand, within QEN71_RS31195at 351.183 kb on - strand, within QEN71_RS31195at 351.206 kb on + strand, within QEN71_RS31195at 351.207 kb on - strand, within QEN71_RS31195at 351.279 kb on - strand, within QEN71_RS31195

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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348,401 - QEN71_RS31185 0.54 -0.3
348,449 + QEN71_RS31185 0.57 -0.2
348,450 - QEN71_RS31185 0.57 -0.8
348,450 - QEN71_RS31185 0.57 -0.1
348,450 - QEN71_RS31185 0.57 -0.7
348,816 + QEN71_RS31185 0.78 -0.5
348,816 + QEN71_RS31185 0.78 -0.5
348,816 + QEN71_RS31185 0.78 -0.8
348,816 + QEN71_RS31185 0.78 +0.5
348,816 + QEN71_RS31185 0.78 -0.7
348,817 - QEN71_RS31185 0.78 -0.3
348,817 - QEN71_RS31185 0.78 +0.1
348,817 - QEN71_RS31185 0.78 -0.4
348,817 - QEN71_RS31185 0.78 +0.6
348,995 + QEN71_RS31185 0.89 -0.2
348,995 + QEN71_RS31185 0.89 +0.2
348,996 - QEN71_RS31185 0.89 -1.2
348,996 - QEN71_RS31185 0.89 -0.2
348,996 - QEN71_RS31185 0.89 +0.2
348,996 - QEN71_RS31185 0.89 -0.4
348,996 - QEN71_RS31185 0.89 +0.6
349,077 + +0.4
349,077 + +0.2
349,077 + -0.1
349,077 + +0.2
349,077 + +0.4
349,078 - -0.2
349,078 - -2.6
349,078 - +0.7
349,078 - -0.9
349,078 - -0.9
349,078 - -1.2
349,078 - +0.3
349,078 - -0.9
349,078 - -0.0
349,081 + -0.2
349,081 + -1.2
349,081 + +0.1
349,081 + +1.2
349,081 + +0.9
349,082 - -0.2
349,082 - +0.5
349,082 - -0.4
349,082 - -2.6
349,230 + +0.2
349,259 - -0.4
349,833 + QEN71_RS31190 0.52 -0.0
349,833 + QEN71_RS31190 0.52 -0.7
349,833 + QEN71_RS31190 0.52 +0.8
349,833 + QEN71_RS31190 0.52 +1.1
349,834 - QEN71_RS31190 0.52 -0.1
349,923 + QEN71_RS31190 0.62 -0.1
349,923 + QEN71_RS31190 0.62 +1.2
349,923 + QEN71_RS31190 0.62 -0.9
349,924 - QEN71_RS31190 0.62 -0.3
349,971 + QEN71_RS31190 0.67 -1.2
349,971 + QEN71_RS31190 0.67 +0.5
349,971 + QEN71_RS31190 0.67 -1.2
349,971 + QEN71_RS31190 0.67 -1.8
349,971 + QEN71_RS31190 0.67 +1.1
349,972 - QEN71_RS31190 0.67 +0.1
349,972 - QEN71_RS31190 0.67 +0.3
349,972 - QEN71_RS31190 0.67 +0.1
350,009 + QEN71_RS31190 0.71 -2.4
350,009 + QEN71_RS31190 0.71 +0.4
350,010 - QEN71_RS31190 0.71 -0.3
350,010 - QEN71_RS31190 0.71 -0.1
350,177 - QEN71_RS31190 0.89 -0.7
350,251 - +0.1
350,251 - -0.0
350,342 + +0.4
350,342 + +0.3
350,343 - -0.0
350,400 - +0.7
350,436 + -0.2
350,437 - -0.6
350,475 - +0.1
350,508 + +0.6
350,508 + -1.8
350,519 + +1.8
350,519 + -1.2
350,519 + +1.4
350,519 + -0.8
350,519 + +0.0
350,519 + -0.1
350,520 - -2.3
350,520 - +0.8
350,520 - +0.9
350,520 - -0.0
350,520 - +2.1
350,532 - -0.3
350,532 - +0.3
350,636 + QEN71_RS31195 0.16 -0.1
350,636 + QEN71_RS31195 0.16 -0.2
350,637 - QEN71_RS31195 0.16 +1.1
350,637 - QEN71_RS31195 0.16 -0.2
350,637 - QEN71_RS31195 0.16 -0.7
350,769 - QEN71_RS31195 0.26 -0.8
350,769 - QEN71_RS31195 0.26 +0.8
350,769 - QEN71_RS31195 0.26 +0.6
350,825 + QEN71_RS31195 0.30 -0.2
350,825 + QEN71_RS31195 0.30 -1.7
350,825 + QEN71_RS31195 0.30 +0.4
350,825 + QEN71_RS31195 0.30 -0.4
350,825 + QEN71_RS31195 0.30 +0.0
350,825 + QEN71_RS31195 0.30 -0.3
350,826 - QEN71_RS31195 0.30 +0.1
350,826 - QEN71_RS31195 0.30 +0.1
350,826 - QEN71_RS31195 0.30 -0.0
350,826 - QEN71_RS31195 0.30 -0.2
350,826 - QEN71_RS31195 0.30 -0.8
350,826 - QEN71_RS31195 0.30 -1.2
350,828 + QEN71_RS31195 0.30 +1.2
350,828 + QEN71_RS31195 0.30 -1.2
350,829 - QEN71_RS31195 0.30 +2.1
350,829 - QEN71_RS31195 0.30 -1.6
350,829 - QEN71_RS31195 0.30 -0.0
350,829 - QEN71_RS31195 0.30 -0.2
350,829 - QEN71_RS31195 0.30 -1.8
350,829 - QEN71_RS31195 0.30 -0.6
350,829 - QEN71_RS31195 0.30 +0.4
350,844 - QEN71_RS31195 0.31 -1.0
350,957 + QEN71_RS31195 0.40 +0.1
350,957 + QEN71_RS31195 0.40 -0.2
350,958 - QEN71_RS31195 0.40 -0.3
350,958 - QEN71_RS31195 0.40 +0.1
350,958 - QEN71_RS31195 0.40 -0.2
350,958 - QEN71_RS31195 0.40 -0.5
350,958 - QEN71_RS31195 0.40 -0.3
351,164 + QEN71_RS31195 0.56 -0.4
351,164 + QEN71_RS31195 0.56 +0.9
351,164 + QEN71_RS31195 0.56 +0.6
351,165 - QEN71_RS31195 0.56 +0.7
351,165 - QEN71_RS31195 0.56 +0.4
351,165 - QEN71_RS31195 0.56 -0.2
351,165 - QEN71_RS31195 0.56 -1.0
351,165 - QEN71_RS31195 0.56 +0.4
351,165 - QEN71_RS31195 0.56 +0.1
351,165 - QEN71_RS31195 0.56 +1.8
351,165 - QEN71_RS31195 0.56 -0.2
351,165 - QEN71_RS31195 0.56 -0.8
351,165 - QEN71_RS31195 0.56 -2.9
351,165 - QEN71_RS31195 0.56 +0.1
351,165 - QEN71_RS31195 0.56 -0.7
351,165 - QEN71_RS31195 0.56 -0.9
351,183 - QEN71_RS31195 0.57 -0.7
351,206 + QEN71_RS31195 0.59 +0.6
351,207 - QEN71_RS31195 0.59 -0.1
351,279 - QEN71_RS31195 0.64 +0.6

Or see this region's nucleotide sequence