Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31120 and QEN71_RS31125 are separated by 31 nucleotides QEN71_RS31125 and QEN71_RS31130 are separated by 2 nucleotides QEN71_RS31130 and QEN71_RS31135 are separated by 32 nucleotides
QEN71_RS31120: QEN71_RS31120 - LysR family transcriptional regulator, at 332,855 to 333,778
_RS31120
QEN71_RS31125: QEN71_RS31125 - EthD family reductase, at 333,810 to 334,490
_RS31125
QEN71_RS31130: QEN71_RS31130 - 4-hydroxyphenylacetate 3-monooxygenase, reductase component, at 334,493 to 335,017
_RS31130
QEN71_RS31135: QEN71_RS31135 - acyl-CoA dehydrogenase family protein, at 335,050 to 336,261
_RS31135
Position (kb) 334
335
336 Strain fitness (log2 ratio) -1
0
1
2 at 334.087 kb on + strand, within QEN71_RS31125 at 334.087 kb on + strand, within QEN71_RS31125 at 334.141 kb on + strand, within QEN71_RS31125 at 334.270 kb on - strand, within QEN71_RS31125 at 334.321 kb on + strand, within QEN71_RS31125 at 334.331 kb on + strand, within QEN71_RS31125 at 334.842 kb on + strand, within QEN71_RS31130 at 334.843 kb on - strand, within QEN71_RS31130 at 335.181 kb on + strand, within QEN71_RS31135 at 335.183 kb on + strand, within QEN71_RS31135 at 335.812 kb on + strand, within QEN71_RS31135 at 335.855 kb on + strand, within QEN71_RS31135 at 335.873 kb on - strand, within QEN71_RS31135 at 335.873 kb on - strand, within QEN71_RS31135 at 335.933 kb on + strand, within QEN71_RS31135 at 335.937 kb on + strand, within QEN71_RS31135
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 334,087 + QEN71_RS31125 0.41 +0.2 334,087 + QEN71_RS31125 0.41 +1.4 334,141 + QEN71_RS31125 0.49 -0.2 334,270 - QEN71_RS31125 0.68 +1.2 334,321 + QEN71_RS31125 0.75 -0.1 334,331 + QEN71_RS31125 0.77 +0.4 334,842 + QEN71_RS31130 0.66 +0.9 334,843 - QEN71_RS31130 0.67 +0.9 335,181 + QEN71_RS31135 0.11 +1.1 335,183 + QEN71_RS31135 0.11 +0.2 335,812 + QEN71_RS31135 0.63 +0.8 335,855 + QEN71_RS31135 0.66 +1.9 335,873 - QEN71_RS31135 0.68 +0.4 335,873 - QEN71_RS31135 0.68 +0.6 335,933 + QEN71_RS31135 0.73 +0.2 335,937 + QEN71_RS31135 0.73 -1.0
Or see this region's nucleotide sequence