Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27425

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27420 and QEN71_RS27425 overlap by 4 nucleotidesQEN71_RS27425 and QEN71_RS27430 overlap by 4 nucleotidesQEN71_RS27430 and QEN71_RS27435 overlap by 4 nucleotides QEN71_RS27420: QEN71_RS27420 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 6,111,110 to 6,112,648 _RS27420 QEN71_RS27425: QEN71_RS27425 - penicillin-binding protein 2, at 6,112,645 to 6,114,519 _RS27425 QEN71_RS27430: QEN71_RS27430 - cell division protein FtsL, at 6,114,516 to 6,114,866 _RS27430 QEN71_RS27435: QEN71_RS27435 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 6,114,863 to 6,115,804 _RS27435 Position (kb) 6112 6113 6114 6115Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6112.651 kb on - strandat 6112.651 kb on - strandat 6112.655 kb on - strandat 6112.655 kb on - strandat 6112.655 kb on - strandat 6112.655 kb on - strandat 6112.840 kb on - strand, within QEN71_RS27425at 6112.840 kb on - strand, within QEN71_RS27425at 6112.992 kb on - strand, within QEN71_RS27425at 6113.013 kb on - strand, within QEN71_RS27425at 6113.013 kb on - strand, within QEN71_RS27425at 6113.013 kb on - strand, within QEN71_RS27425at 6113.218 kb on - strand, within QEN71_RS27425at 6113.218 kb on - strand, within QEN71_RS27425at 6113.218 kb on - strand, within QEN71_RS27425at 6113.218 kb on - strand, within QEN71_RS27425at 6113.218 kb on - strand, within QEN71_RS27425at 6113.218 kb on - strand, within QEN71_RS27425at 6113.220 kb on - strand, within QEN71_RS27425at 6113.220 kb on - strand, within QEN71_RS27425at 6113.259 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.376 kb on - strand, within QEN71_RS27425at 6113.530 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.542 kb on - strand, within QEN71_RS27425at 6113.617 kb on - strand, within QEN71_RS27425at 6113.617 kb on - strand, within QEN71_RS27425at 6113.617 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.679 kb on - strand, within QEN71_RS27425at 6113.688 kb on - strand, within QEN71_RS27425at 6113.796 kb on - strand, within QEN71_RS27425at 6113.796 kb on - strand, within QEN71_RS27425at 6113.796 kb on - strand, within QEN71_RS27425at 6113.796 kb on - strand, within QEN71_RS27425at 6113.796 kb on - strand, within QEN71_RS27425at 6113.796 kb on - strand, within QEN71_RS27425at 6113.796 kb on - strand, within QEN71_RS27425at 6114.030 kb on - strand, within QEN71_RS27425at 6114.030 kb on - strand, within QEN71_RS27425at 6114.037 kb on - strand, within QEN71_RS27425at 6114.045 kb on - strand, within QEN71_RS27425at 6114.045 kb on - strand, within QEN71_RS27425at 6114.045 kb on - strand, within QEN71_RS27425at 6114.045 kb on - strand, within QEN71_RS27425

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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6,112,651 - -1.8
6,112,651 - -1.4
6,112,655 - -1.0
6,112,655 - +0.3
6,112,655 - +1.8
6,112,655 - +0.3
6,112,840 - QEN71_RS27425 0.10 -2.7
6,112,840 - QEN71_RS27425 0.10 -2.1
6,112,992 - QEN71_RS27425 0.19 +0.3
6,113,013 - QEN71_RS27425 0.20 -1.3
6,113,013 - QEN71_RS27425 0.20 -4.2
6,113,013 - QEN71_RS27425 0.20 -1.6
6,113,218 - QEN71_RS27425 0.31 -2.8
6,113,218 - QEN71_RS27425 0.31 -2.1
6,113,218 - QEN71_RS27425 0.31 -2.6
6,113,218 - QEN71_RS27425 0.31 -2.4
6,113,218 - QEN71_RS27425 0.31 -4.4
6,113,218 - QEN71_RS27425 0.31 -2.6
6,113,220 - QEN71_RS27425 0.31 -1.6
6,113,220 - QEN71_RS27425 0.31 -0.2
6,113,259 - QEN71_RS27425 0.33 +0.6
6,113,376 - QEN71_RS27425 0.39 -1.2
6,113,376 - QEN71_RS27425 0.39 -3.9
6,113,376 - QEN71_RS27425 0.39 -2.9
6,113,376 - QEN71_RS27425 0.39 -2.2
6,113,376 - QEN71_RS27425 0.39 -1.1
6,113,376 - QEN71_RS27425 0.39 -3.1
6,113,376 - QEN71_RS27425 0.39 -3.2
6,113,376 - QEN71_RS27425 0.39 -4.1
6,113,376 - QEN71_RS27425 0.39 -4.1
6,113,376 - QEN71_RS27425 0.39 -2.0
6,113,376 - QEN71_RS27425 0.39 -2.6
6,113,376 - QEN71_RS27425 0.39 -0.3
6,113,376 - QEN71_RS27425 0.39 +0.1
6,113,376 - QEN71_RS27425 0.39 -2.0
6,113,530 - QEN71_RS27425 0.47 -2.2
6,113,542 - QEN71_RS27425 0.48 -1.8
6,113,542 - QEN71_RS27425 0.48 +1.3
6,113,542 - QEN71_RS27425 0.48 -1.6
6,113,542 - QEN71_RS27425 0.48 -2.1
6,113,542 - QEN71_RS27425 0.48 -0.2
6,113,542 - QEN71_RS27425 0.48 +0.3
6,113,542 - QEN71_RS27425 0.48 +0.3
6,113,542 - QEN71_RS27425 0.48 -4.5
6,113,542 - QEN71_RS27425 0.48 -1.0
6,113,542 - QEN71_RS27425 0.48 -1.1
6,113,617 - QEN71_RS27425 0.52 -2.1
6,113,617 - QEN71_RS27425 0.52 -1.7
6,113,617 - QEN71_RS27425 0.52 -3.7
6,113,679 - QEN71_RS27425 0.55 -3.3
6,113,679 - QEN71_RS27425 0.55 -3.3
6,113,679 - QEN71_RS27425 0.55 -0.6
6,113,679 - QEN71_RS27425 0.55 -2.2
6,113,679 - QEN71_RS27425 0.55 -2.5
6,113,679 - QEN71_RS27425 0.55 -1.9
6,113,679 - QEN71_RS27425 0.55 -0.7
6,113,679 - QEN71_RS27425 0.55 -3.4
6,113,679 - QEN71_RS27425 0.55 -2.2
6,113,679 - QEN71_RS27425 0.55 -3.2
6,113,679 - QEN71_RS27425 0.55 -0.5
6,113,688 - QEN71_RS27425 0.56 -0.9
6,113,796 - QEN71_RS27425 0.61 +0.4
6,113,796 - QEN71_RS27425 0.61 -3.9
6,113,796 - QEN71_RS27425 0.61 -1.2
6,113,796 - QEN71_RS27425 0.61 -3.9
6,113,796 - QEN71_RS27425 0.61 -1.4
6,113,796 - QEN71_RS27425 0.61 +1.4
6,113,796 - QEN71_RS27425 0.61 -1.8
6,114,030 - QEN71_RS27425 0.74 +0.8
6,114,030 - QEN71_RS27425 0.74 -4.7
6,114,037 - QEN71_RS27425 0.74 -1.2
6,114,045 - QEN71_RS27425 0.75 -1.2
6,114,045 - QEN71_RS27425 0.75 +1.0
6,114,045 - QEN71_RS27425 0.75 -0.4
6,114,045 - QEN71_RS27425 0.75 -0.2

Or see this region's nucleotide sequence