Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS26435

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS26425 and QEN71_RS26430 are separated by 64 nucleotidesQEN71_RS26430 and QEN71_RS26435 are separated by 201 nucleotidesQEN71_RS26435 and QEN71_RS26440 are separated by 34 nucleotides QEN71_RS26425: QEN71_RS26425 - mechanosensitive ion channel family protein, at 5,892,077 to 5,892,889 _RS26425 QEN71_RS26430: QEN71_RS26430 - DedA family protein, at 5,892,954 to 5,893,643 _RS26430 QEN71_RS26435: QEN71_RS26435 - DNA mismatch repair endonuclease MutL, at 5,893,845 to 5,895,914 _RS26435 QEN71_RS26440: QEN71_RS26440 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 5,895,949 to 5,896,902 _RS26440 Position (kb) 5893 5894 5895 5896Strain fitness (log2 ratio) -2 -1 0 1 2at 5892.887 kb on + strandat 5892.888 kb on - strandat 5892.896 kb on + strandat 5892.897 kb on - strandat 5893.083 kb on - strand, within QEN71_RS26430at 5893.381 kb on + strand, within QEN71_RS26430at 5893.381 kb on + strand, within QEN71_RS26430at 5893.382 kb on - strand, within QEN71_RS26430at 5893.382 kb on - strand, within QEN71_RS26430at 5893.604 kb on + strandat 5893.655 kb on + strandat 5893.655 kb on + strandat 5893.656 kb on - strandat 5893.665 kb on + strandat 5893.666 kb on - strandat 5893.666 kb on - strandat 5893.713 kb on - strandat 5893.720 kb on + strandat 5893.721 kb on - strandat 5893.721 kb on - strandat 5893.760 kb on - strandat 5893.799 kb on + strandat 5893.800 kb on - strandat 5893.800 kb on - strandat 5893.800 kb on - strandat 5893.833 kb on + strandat 5893.836 kb on - strandat 5894.003 kb on - strandat 5894.003 kb on - strandat 5894.003 kb on - strandat 5894.351 kb on + strand, within QEN71_RS26435at 5894.352 kb on - strand, within QEN71_RS26435at 5894.385 kb on + strand, within QEN71_RS26435at 5894.385 kb on + strand, within QEN71_RS26435at 5894.386 kb on - strand, within QEN71_RS26435at 5894.631 kb on + strand, within QEN71_RS26435at 5894.631 kb on + strand, within QEN71_RS26435at 5894.631 kb on + strand, within QEN71_RS26435at 5894.631 kb on + strand, within QEN71_RS26435at 5894.631 kb on + strand, within QEN71_RS26435at 5894.631 kb on + strand, within QEN71_RS26435at 5894.631 kb on + strand, within QEN71_RS26435at 5894.632 kb on - strand, within QEN71_RS26435at 5894.632 kb on - strand, within QEN71_RS26435at 5894.682 kb on + strand, within QEN71_RS26435at 5894.682 kb on + strand, within QEN71_RS26435at 5894.683 kb on - strand, within QEN71_RS26435at 5894.745 kb on + strand, within QEN71_RS26435at 5894.781 kb on + strand, within QEN71_RS26435at 5894.781 kb on + strand, within QEN71_RS26435at 5894.781 kb on + strand, within QEN71_RS26435at 5894.781 kb on + strand, within QEN71_RS26435at 5894.781 kb on + strand, within QEN71_RS26435at 5894.781 kb on + strand, within QEN71_RS26435at 5894.781 kb on + strand, within QEN71_RS26435at 5894.781 kb on + strand, within QEN71_RS26435at 5894.781 kb on + strand, within QEN71_RS26435at 5894.782 kb on - strand, within QEN71_RS26435at 5894.782 kb on - strand, within QEN71_RS26435at 5894.782 kb on - strand, within QEN71_RS26435at 5895.110 kb on + strand, within QEN71_RS26435at 5895.110 kb on + strand, within QEN71_RS26435at 5895.110 kb on + strand, within QEN71_RS26435at 5895.110 kb on + strand, within QEN71_RS26435at 5895.111 kb on - strand, within QEN71_RS26435at 5895.153 kb on + strand, within QEN71_RS26435at 5895.153 kb on + strand, within QEN71_RS26435at 5895.153 kb on + strand, within QEN71_RS26435at 5895.153 kb on + strand, within QEN71_RS26435at 5895.276 kb on + strand, within QEN71_RS26435at 5895.276 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.372 kb on + strand, within QEN71_RS26435at 5895.373 kb on - strand, within QEN71_RS26435at 5895.413 kb on + strand, within QEN71_RS26435at 5895.441 kb on + strand, within QEN71_RS26435at 5895.690 kb on + strand, within QEN71_RS26435at 5895.691 kb on - strand, within QEN71_RS26435at 5895.691 kb on - strand, within QEN71_RS26435at 5895.864 kb on + strandat 5895.864 kb on + strandat 5895.865 kb on - strandat 5895.865 kb on - strandat 5895.865 kb on - strandat 5896.174 kb on + strand, within QEN71_RS26440at 5896.350 kb on + strand, within QEN71_RS26440at 5896.465 kb on - strand, within QEN71_RS26440at 5896.535 kb on - strand, within QEN71_RS26440at 5896.900 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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5,892,887 + -1.0
5,892,888 - +0.1
5,892,896 + +1.1
5,892,897 - -0.7
5,893,083 - QEN71_RS26430 0.19 -0.1
5,893,381 + QEN71_RS26430 0.62 -1.9
5,893,381 + QEN71_RS26430 0.62 +0.9
5,893,382 - QEN71_RS26430 0.62 +0.5
5,893,382 - QEN71_RS26430 0.62 +1.8
5,893,604 + -1.5
5,893,655 + -0.9
5,893,655 + -1.5
5,893,656 - -0.1
5,893,665 + -0.5
5,893,666 - -0.2
5,893,666 - -0.3
5,893,713 - +0.5
5,893,720 + +0.7
5,893,721 - -1.4
5,893,721 - +1.5
5,893,760 - -0.5
5,893,799 + -2.0
5,893,800 - -1.6
5,893,800 - -2.0
5,893,800 - +0.4
5,893,833 + +0.5
5,893,836 - -0.2
5,894,003 - -0.0
5,894,003 - -0.7
5,894,003 - +0.5
5,894,351 + QEN71_RS26435 0.24 +0.6
5,894,352 - QEN71_RS26435 0.24 -0.7
5,894,385 + QEN71_RS26435 0.26 -0.7
5,894,385 + QEN71_RS26435 0.26 -0.1
5,894,386 - QEN71_RS26435 0.26 +1.5
5,894,631 + QEN71_RS26435 0.38 -1.9
5,894,631 + QEN71_RS26435 0.38 -0.9
5,894,631 + QEN71_RS26435 0.38 -0.0
5,894,631 + QEN71_RS26435 0.38 -0.9
5,894,631 + QEN71_RS26435 0.38 +0.2
5,894,631 + QEN71_RS26435 0.38 +0.2
5,894,631 + QEN71_RS26435 0.38 -0.4
5,894,632 - QEN71_RS26435 0.38 +0.8
5,894,632 - QEN71_RS26435 0.38 +0.1
5,894,682 + QEN71_RS26435 0.40 -1.4
5,894,682 + QEN71_RS26435 0.40 -1.2
5,894,683 - QEN71_RS26435 0.40 -0.2
5,894,745 + QEN71_RS26435 0.43 +0.2
5,894,781 + QEN71_RS26435 0.45 -2.0
5,894,781 + QEN71_RS26435 0.45 +1.0
5,894,781 + QEN71_RS26435 0.45 +1.5
5,894,781 + QEN71_RS26435 0.45 -0.2
5,894,781 + QEN71_RS26435 0.45 +0.1
5,894,781 + QEN71_RS26435 0.45 -0.7
5,894,781 + QEN71_RS26435 0.45 -1.4
5,894,781 + QEN71_RS26435 0.45 +0.0
5,894,781 + QEN71_RS26435 0.45 +0.9
5,894,782 - QEN71_RS26435 0.45 +1.7
5,894,782 - QEN71_RS26435 0.45 +0.5
5,894,782 - QEN71_RS26435 0.45 +0.1
5,895,110 + QEN71_RS26435 0.61 +0.8
5,895,110 + QEN71_RS26435 0.61 +0.5
5,895,110 + QEN71_RS26435 0.61 +0.8
5,895,110 + QEN71_RS26435 0.61 +0.1
5,895,111 - QEN71_RS26435 0.61 -0.2
5,895,153 + QEN71_RS26435 0.63 +0.4
5,895,153 + QEN71_RS26435 0.63 +0.4
5,895,153 + QEN71_RS26435 0.63 +0.4
5,895,153 + QEN71_RS26435 0.63 +0.1
5,895,276 + QEN71_RS26435 0.69 -0.1
5,895,276 + QEN71_RS26435 0.69 +0.0
5,895,372 + QEN71_RS26435 0.74 +0.1
5,895,372 + QEN71_RS26435 0.74 +0.7
5,895,372 + QEN71_RS26435 0.74 -0.8
5,895,372 + QEN71_RS26435 0.74 +0.7
5,895,372 + QEN71_RS26435 0.74 -0.5
5,895,372 + QEN71_RS26435 0.74 +1.9
5,895,372 + QEN71_RS26435 0.74 -0.9
5,895,372 + QEN71_RS26435 0.74 -0.8
5,895,372 + QEN71_RS26435 0.74 -0.7
5,895,372 + QEN71_RS26435 0.74 -0.7
5,895,373 - QEN71_RS26435 0.74 -0.7
5,895,413 + QEN71_RS26435 0.76 +1.2
5,895,441 + QEN71_RS26435 0.77 +0.6
5,895,690 + QEN71_RS26435 0.89 -0.9
5,895,691 - QEN71_RS26435 0.89 -2.0
5,895,691 - QEN71_RS26435 0.89 +0.5
5,895,864 + +0.5
5,895,864 + +0.9
5,895,865 - +0.6
5,895,865 - -0.6
5,895,865 - -0.1
5,896,174 + QEN71_RS26440 0.24 -0.2
5,896,350 + QEN71_RS26440 0.42 +0.1
5,896,465 - QEN71_RS26440 0.54 +0.1
5,896,535 - QEN71_RS26440 0.61 +0.1
5,896,900 + -1.0

Or see this region's nucleotide sequence