Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS26045

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS26040 and QEN71_RS26045 are separated by 36 nucleotidesQEN71_RS26045 and QEN71_RS26050 are separated by 227 nucleotides QEN71_RS26040: QEN71_RS26040 - sulfite exporter TauE/SafE family protein, at 5,804,846 to 5,805,634 _RS26040 QEN71_RS26045: QEN71_RS26045 - hypothetical protein, at 5,805,671 to 5,805,925 _RS26045 QEN71_RS26050: QEN71_RS26050 - D-(-)-3-hydroxybutyrate oligomer hydrolase, at 5,806,153 to 5,808,273 _RS26050 Position (kb) 5805 5806Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5804.674 kb on + strandat 5804.675 kb on - strandat 5804.702 kb on - strandat 5804.702 kb on - strandat 5804.823 kb on + strandat 5804.824 kb on - strandat 5804.824 kb on - strandat 5804.824 kb on - strandat 5805.006 kb on - strand, within QEN71_RS26040at 5805.006 kb on - strand, within QEN71_RS26040at 5805.006 kb on - strand, within QEN71_RS26040at 5805.006 kb on - strand, within QEN71_RS26040at 5805.384 kb on - strand, within QEN71_RS26040at 5805.545 kb on + strand, within QEN71_RS26040at 5805.545 kb on + strand, within QEN71_RS26040at 5805.546 kb on - strand, within QEN71_RS26040at 5805.546 kb on - strand, within QEN71_RS26040at 5805.546 kb on - strand, within QEN71_RS26040at 5805.650 kb on - strandat 5805.730 kb on + strand, within QEN71_RS26045at 5805.741 kb on + strand, within QEN71_RS26045at 5805.741 kb on + strand, within QEN71_RS26045at 5805.742 kb on - strand, within QEN71_RS26045at 5805.742 kb on - strand, within QEN71_RS26045at 5805.903 kb on + strandat 5805.903 kb on + strandat 5805.903 kb on + strandat 5805.903 kb on + strandat 5805.903 kb on + strandat 5805.903 kb on + strandat 5805.903 kb on + strandat 5805.904 kb on - strandat 5805.904 kb on - strandat 5805.904 kb on - strandat 5805.904 kb on - strandat 5805.904 kb on - strandat 5805.905 kb on + strandat 5805.905 kb on + strandat 5805.905 kb on + strandat 5805.906 kb on - strandat 5805.906 kb on - strandat 5805.906 kb on - strandat 5805.906 kb on - strandat 5805.906 kb on - strandat 5805.925 kb on + strandat 5805.925 kb on + strandat 5805.926 kb on - strandat 5805.948 kb on + strandat 5805.949 kb on - strandat 5805.959 kb on + strandat 5805.960 kb on - strandat 5806.358 kb on + strandat 5806.358 kb on + strandat 5806.358 kb on + strandat 5806.358 kb on + strandat 5806.358 kb on + strandat 5806.358 kb on + strandat 5806.358 kb on + strandat 5806.359 kb on - strandat 5806.359 kb on - strandat 5806.359 kb on - strandat 5806.359 kb on - strandat 5806.359 kb on - strandat 5806.361 kb on + strandat 5806.361 kb on + strandat 5806.361 kb on + strandat 5806.361 kb on + strandat 5806.361 kb on + strandat 5806.361 kb on + strandat 5806.362 kb on - strandat 5806.362 kb on - strandat 5806.362 kb on - strandat 5806.362 kb on - strandat 5806.362 kb on - strandat 5806.362 kb on - strandat 5806.362 kb on - strandat 5806.439 kb on + strand, within QEN71_RS26050at 5806.439 kb on + strand, within QEN71_RS26050at 5806.440 kb on - strand, within QEN71_RS26050at 5806.440 kb on - strand, within QEN71_RS26050at 5806.440 kb on - strand, within QEN71_RS26050at 5806.440 kb on - strand, within QEN71_RS26050at 5806.440 kb on - strand, within QEN71_RS26050at 5806.440 kb on - strand, within QEN71_RS26050at 5806.440 kb on - strand, within QEN71_RS26050at 5806.490 kb on + strand, within QEN71_RS26050at 5806.490 kb on + strand, within QEN71_RS26050at 5806.491 kb on - strand, within QEN71_RS26050at 5806.712 kb on + strand, within QEN71_RS26050at 5806.712 kb on + strand, within QEN71_RS26050at 5806.712 kb on + strand, within QEN71_RS26050at 5806.712 kb on + strand, within QEN71_RS26050at 5806.713 kb on - strand, within QEN71_RS26050at 5806.713 kb on - strand, within QEN71_RS26050at 5806.871 kb on + strand, within QEN71_RS26050at 5806.871 kb on + strand, within QEN71_RS26050at 5806.872 kb on - strand, within QEN71_RS26050at 5806.883 kb on + strand, within QEN71_RS26050at 5806.883 kb on + strand, within QEN71_RS26050at 5806.884 kb on - strand, within QEN71_RS26050at 5806.884 kb on - strand, within QEN71_RS26050at 5806.884 kb on - strand, within QEN71_RS26050at 5806.884 kb on - strand, within QEN71_RS26050at 5806.884 kb on - strand, within QEN71_RS26050at 5806.884 kb on - strand, within QEN71_RS26050at 5806.884 kb on - strand, within QEN71_RS26050

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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5,804,674 + +0.1
5,804,675 - +0.7
5,804,702 - -0.4
5,804,702 - -0.2
5,804,823 + +0.3
5,804,824 - +0.3
5,804,824 - -0.5
5,804,824 - +0.4
5,805,006 - QEN71_RS26040 0.20 -0.3
5,805,006 - QEN71_RS26040 0.20 -1.4
5,805,006 - QEN71_RS26040 0.20 +0.3
5,805,006 - QEN71_RS26040 0.20 +0.2
5,805,384 - QEN71_RS26040 0.68 -0.0
5,805,545 + QEN71_RS26040 0.89 +0.2
5,805,545 + QEN71_RS26040 0.89 -0.9
5,805,546 - QEN71_RS26040 0.89 +1.0
5,805,546 - QEN71_RS26040 0.89 -0.6
5,805,546 - QEN71_RS26040 0.89 -2.0
5,805,650 - +0.3
5,805,730 + QEN71_RS26045 0.23 -0.9
5,805,741 + QEN71_RS26045 0.27 +0.6
5,805,741 + QEN71_RS26045 0.27 +0.2
5,805,742 - QEN71_RS26045 0.28 -2.1
5,805,742 - QEN71_RS26045 0.28 -3.9
5,805,903 + -1.1
5,805,903 + -1.9
5,805,903 + -1.2
5,805,903 + -0.1
5,805,903 + -0.2
5,805,903 + -0.1
5,805,903 + -0.8
5,805,904 - -0.5
5,805,904 - -1.2
5,805,904 - -1.1
5,805,904 - +1.1
5,805,904 - -0.9
5,805,905 + -0.5
5,805,905 + -0.2
5,805,905 + +0.4
5,805,906 - -0.5
5,805,906 - -0.4
5,805,906 - -0.4
5,805,906 - -0.7
5,805,906 - -0.5
5,805,925 + -0.2
5,805,925 + +0.1
5,805,926 - +0.5
5,805,948 + -0.5
5,805,949 - +1.4
5,805,959 + +0.3
5,805,960 - +0.2
5,806,358 + -1.3
5,806,358 + +0.2
5,806,358 + +0.0
5,806,358 + +1.3
5,806,358 + -0.2
5,806,358 + -0.8
5,806,358 + -1.2
5,806,359 - +0.6
5,806,359 - -0.2
5,806,359 - +1.1
5,806,359 - -0.3
5,806,359 - +2.3
5,806,361 + -0.2
5,806,361 + -1.1
5,806,361 + -0.1
5,806,361 + -0.2
5,806,361 + -1.2
5,806,361 + -1.0
5,806,362 - +0.5
5,806,362 - -0.5
5,806,362 - -0.1
5,806,362 - -1.5
5,806,362 - +0.1
5,806,362 - +0.2
5,806,362 - -0.3
5,806,439 + QEN71_RS26050 0.13 -0.4
5,806,439 + QEN71_RS26050 0.13 +0.1
5,806,440 - QEN71_RS26050 0.14 -1.4
5,806,440 - QEN71_RS26050 0.14 +0.5
5,806,440 - QEN71_RS26050 0.14 -1.2
5,806,440 - QEN71_RS26050 0.14 -0.5
5,806,440 - QEN71_RS26050 0.14 -2.9
5,806,440 - QEN71_RS26050 0.14 -2.1
5,806,440 - QEN71_RS26050 0.14 -0.1
5,806,490 + QEN71_RS26050 0.16 +0.1
5,806,490 + QEN71_RS26050 0.16 -0.3
5,806,491 - QEN71_RS26050 0.16 -2.2
5,806,712 + QEN71_RS26050 0.26 -0.0
5,806,712 + QEN71_RS26050 0.26 -0.0
5,806,712 + QEN71_RS26050 0.26 +0.9
5,806,712 + QEN71_RS26050 0.26 -0.1
5,806,713 - QEN71_RS26050 0.26 -1.0
5,806,713 - QEN71_RS26050 0.26 +1.1
5,806,871 + QEN71_RS26050 0.34 -0.9
5,806,871 + QEN71_RS26050 0.34 +1.4
5,806,872 - QEN71_RS26050 0.34 +0.0
5,806,883 + QEN71_RS26050 0.34 +1.1
5,806,883 + QEN71_RS26050 0.34 -1.2
5,806,884 - QEN71_RS26050 0.34 -1.2
5,806,884 - QEN71_RS26050 0.34 +0.0
5,806,884 - QEN71_RS26050 0.34 +0.2
5,806,884 - QEN71_RS26050 0.34 +1.4
5,806,884 - QEN71_RS26050 0.34 -0.1
5,806,884 - QEN71_RS26050 0.34 -0.5
5,806,884 - QEN71_RS26050 0.34 -1.1

Or see this region's nucleotide sequence