Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25690 and QEN71_RS25695 are separated by 51 nucleotides QEN71_RS25695 and QEN71_RS25700 overlap by 1 nucleotides
QEN71_RS25690: QEN71_RS25690 - glycosyltransferase family 4 protein, at 5,724,755 to 5,726,140
_RS25690
QEN71_RS25695: QEN71_RS25695 - glycosyltransferase family 4 protein, at 5,726,192 to 5,727,805
_RS25695
QEN71_RS25700: QEN71_RS25700 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 5,727,805 to 5,728,902
_RS25700
Position (kb) 5726
5727
5728 Strain fitness (log2 ratio) -2
-1
0
1 at 5725.204 kb on - strand, within QEN71_RS25690 at 5725.204 kb on - strand, within QEN71_RS25690 at 5725.204 kb on - strand, within QEN71_RS25690 at 5725.451 kb on + strand, within QEN71_RS25690 at 5725.452 kb on - strand, within QEN71_RS25690 at 5725.452 kb on - strand, within QEN71_RS25690 at 5725.497 kb on + strand, within QEN71_RS25690 at 5725.498 kb on - strand, within QEN71_RS25690 at 5725.710 kb on + strand, within QEN71_RS25690 at 5725.717 kb on + strand, within QEN71_RS25690 at 5725.730 kb on - strand, within QEN71_RS25690 at 5725.755 kb on + strand, within QEN71_RS25690 at 5725.756 kb on - strand, within QEN71_RS25690 at 5725.756 kb on - strand, within QEN71_RS25690 at 5725.817 kb on + strand, within QEN71_RS25690 at 5725.854 kb on + strand, within QEN71_RS25690 at 5725.997 kb on - strand, within QEN71_RS25690 at 5725.999 kb on - strand, within QEN71_RS25690 at 5726.085 kb on - strand at 5726.085 kb on - strand at 5726.159 kb on + strand at 5726.160 kb on - strand at 5726.160 kb on - strand at 5726.163 kb on + strand at 5726.173 kb on + strand at 5726.371 kb on + strand, within QEN71_RS25695 at 5726.372 kb on - strand, within QEN71_RS25695 at 5726.372 kb on - strand, within QEN71_RS25695 at 5726.385 kb on + strand, within QEN71_RS25695 at 5726.386 kb on - strand, within QEN71_RS25695 at 5726.386 kb on - strand, within QEN71_RS25695 at 5726.481 kb on + strand, within QEN71_RS25695 at 5726.581 kb on - strand, within QEN71_RS25695 at 5726.581 kb on - strand, within QEN71_RS25695 at 5726.584 kb on - strand, within QEN71_RS25695 at 5726.701 kb on + strand, within QEN71_RS25695 at 5726.701 kb on + strand, within QEN71_RS25695 at 5726.702 kb on - strand, within QEN71_RS25695 at 5726.702 kb on - strand, within QEN71_RS25695 at 5726.702 kb on - strand, within QEN71_RS25695 at 5726.702 kb on - strand, within QEN71_RS25695 at 5726.722 kb on - strand, within QEN71_RS25695 at 5726.817 kb on + strand, within QEN71_RS25695 at 5726.817 kb on + strand, within QEN71_RS25695 at 5726.818 kb on - strand, within QEN71_RS25695 at 5726.818 kb on - strand, within QEN71_RS25695 at 5726.818 kb on - strand, within QEN71_RS25695 at 5726.818 kb on - strand, within QEN71_RS25695 at 5726.919 kb on + strand, within QEN71_RS25695 at 5727.009 kb on + strand, within QEN71_RS25695 at 5727.010 kb on - strand, within QEN71_RS25695 at 5727.010 kb on - strand, within QEN71_RS25695 at 5727.022 kb on - strand, within QEN71_RS25695 at 5727.022 kb on - strand, within QEN71_RS25695 at 5727.080 kb on - strand, within QEN71_RS25695 at 5727.175 kb on - strand, within QEN71_RS25695 at 5727.255 kb on + strand, within QEN71_RS25695 at 5727.255 kb on + strand, within QEN71_RS25695 at 5727.255 kb on + strand, within QEN71_RS25695 at 5727.255 kb on + strand, within QEN71_RS25695 at 5727.255 kb on + strand, within QEN71_RS25695 at 5727.255 kb on + strand, within QEN71_RS25695 at 5727.256 kb on - strand, within QEN71_RS25695 at 5727.256 kb on - strand, within QEN71_RS25695 at 5727.256 kb on - strand, within QEN71_RS25695 at 5727.299 kb on + strand, within QEN71_RS25695 at 5727.300 kb on - strand, within QEN71_RS25695 at 5727.374 kb on + strand, within QEN71_RS25695 at 5727.375 kb on - strand, within QEN71_RS25695 at 5727.522 kb on + strand, within QEN71_RS25695 at 5727.523 kb on - strand, within QEN71_RS25695 at 5727.523 kb on - strand, within QEN71_RS25695 at 5727.599 kb on + strand, within QEN71_RS25695 at 5727.600 kb on - strand, within QEN71_RS25695 at 5727.618 kb on + strand, within QEN71_RS25695 at 5727.619 kb on - strand, within QEN71_RS25695 at 5727.680 kb on - strand at 5727.680 kb on - strand at 5727.757 kb on + strand at 5727.758 kb on - strand at 5727.758 kb on - strand at 5727.758 kb on - strand at 5727.806 kb on + strand at 5727.836 kb on + strand at 5727.836 kb on + strand at 5727.836 kb on + strand at 5727.836 kb on + strand at 5727.837 kb on - strand at 5727.837 kb on - strand at 5727.837 kb on - strand at 5727.858 kb on + strand at 5727.858 kb on + strand at 5727.859 kb on - strand at 5727.859 kb on - strand at 5728.124 kb on + strand, within QEN71_RS25700 at 5728.125 kb on - strand, within QEN71_RS25700 at 5728.127 kb on + strand, within QEN71_RS25700 at 5728.128 kb on - strand, within QEN71_RS25700 at 5728.244 kb on + strand, within QEN71_RS25700 at 5728.245 kb on - strand, within QEN71_RS25700 at 5728.245 kb on - strand, within QEN71_RS25700 at 5728.503 kb on - strand, within QEN71_RS25700 at 5728.570 kb on - strand, within QEN71_RS25700 at 5728.645 kb on - strand, within QEN71_RS25700 at 5728.646 kb on + strand, within QEN71_RS25700 at 5728.646 kb on + strand, within QEN71_RS25700 at 5728.646 kb on + strand, within QEN71_RS25700 at 5728.646 kb on + strand, within QEN71_RS25700 at 5728.647 kb on - strand, within QEN71_RS25700 at 5728.647 kb on - strand, within QEN71_RS25700 at 5728.647 kb on - strand, within QEN71_RS25700 at 5728.647 kb on - strand, within QEN71_RS25700 at 5728.647 kb on - strand, within QEN71_RS25700 at 5728.647 kb on - strand, within QEN71_RS25700 at 5728.733 kb on - strand, within QEN71_RS25700 at 5728.760 kb on + strand, within QEN71_RS25700
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 5,725,204 - QEN71_RS25690 0.32 -0.2 5,725,204 - QEN71_RS25690 0.32 -1.2 5,725,204 - QEN71_RS25690 0.32 -0.7 5,725,451 + QEN71_RS25690 0.50 -1.1 5,725,452 - QEN71_RS25690 0.50 +0.1 5,725,452 - QEN71_RS25690 0.50 -1.6 5,725,497 + QEN71_RS25690 0.54 +0.1 5,725,498 - QEN71_RS25690 0.54 -0.2 5,725,710 + QEN71_RS25690 0.69 -1.5 5,725,717 + QEN71_RS25690 0.69 -1.2 5,725,730 - QEN71_RS25690 0.70 -0.9 5,725,755 + QEN71_RS25690 0.72 -1.6 5,725,756 - QEN71_RS25690 0.72 +0.1 5,725,756 - QEN71_RS25690 0.72 -0.5 5,725,817 + QEN71_RS25690 0.77 -1.5 5,725,854 + QEN71_RS25690 0.79 -0.9 5,725,997 - QEN71_RS25690 0.90 -0.9 5,725,999 - QEN71_RS25690 0.90 +0.1 5,726,085 - -1.0 5,726,085 - -0.5 5,726,159 + -2.3 5,726,160 - -0.6 5,726,160 - -1.2 5,726,163 + +1.1 5,726,173 + +0.8 5,726,371 + QEN71_RS25695 0.11 +0.4 5,726,372 - QEN71_RS25695 0.11 -0.8 5,726,372 - QEN71_RS25695 0.11 +0.2 5,726,385 + QEN71_RS25695 0.12 -1.6 5,726,386 - QEN71_RS25695 0.12 -2.2 5,726,386 - QEN71_RS25695 0.12 +0.4 5,726,481 + QEN71_RS25695 0.18 -1.7 5,726,581 - QEN71_RS25695 0.24 -1.4 5,726,581 - QEN71_RS25695 0.24 +0.7 5,726,584 - QEN71_RS25695 0.24 -0.1 5,726,701 + QEN71_RS25695 0.32 -0.7 5,726,701 + QEN71_RS25695 0.32 -0.7 5,726,702 - QEN71_RS25695 0.32 -2.7 5,726,702 - QEN71_RS25695 0.32 -0.2 5,726,702 - QEN71_RS25695 0.32 -0.7 5,726,702 - QEN71_RS25695 0.32 -0.5 5,726,722 - QEN71_RS25695 0.33 -1.2 5,726,817 + QEN71_RS25695 0.39 +0.1 5,726,817 + QEN71_RS25695 0.39 -1.6 5,726,818 - QEN71_RS25695 0.39 +0.1 5,726,818 - QEN71_RS25695 0.39 -0.7 5,726,818 - QEN71_RS25695 0.39 -0.9 5,726,818 - QEN71_RS25695 0.39 -2.2 5,726,919 + QEN71_RS25695 0.45 -1.9 5,727,009 + QEN71_RS25695 0.51 -1.7 5,727,010 - QEN71_RS25695 0.51 -0.5 5,727,010 - QEN71_RS25695 0.51 -1.2 5,727,022 - QEN71_RS25695 0.51 -0.9 5,727,022 - QEN71_RS25695 0.51 +0.1 5,727,080 - QEN71_RS25695 0.55 -1.7 5,727,175 - QEN71_RS25695 0.61 -1.4 5,727,255 + QEN71_RS25695 0.66 -1.8 5,727,255 + QEN71_RS25695 0.66 -0.9 5,727,255 + QEN71_RS25695 0.66 -0.7 5,727,255 + QEN71_RS25695 0.66 +0.1 5,727,255 + QEN71_RS25695 0.66 -0.2 5,727,255 + QEN71_RS25695 0.66 -1.1 5,727,256 - QEN71_RS25695 0.66 -0.2 5,727,256 - QEN71_RS25695 0.66 -1.2 5,727,256 - QEN71_RS25695 0.66 -0.5 5,727,299 + QEN71_RS25695 0.69 -0.9 5,727,300 - QEN71_RS25695 0.69 -2.2 5,727,374 + QEN71_RS25695 0.73 -0.7 5,727,375 - QEN71_RS25695 0.73 -0.7 5,727,522 + QEN71_RS25695 0.82 -0.9 5,727,523 - QEN71_RS25695 0.82 +0.1 5,727,523 - QEN71_RS25695 0.82 -1.1 5,727,599 + QEN71_RS25695 0.87 +0.8 5,727,600 - QEN71_RS25695 0.87 -2.0 5,727,618 + QEN71_RS25695 0.88 +0.1 5,727,619 - QEN71_RS25695 0.88 -0.7 5,727,680 - -1.2 5,727,680 - -0.2 5,727,757 + -1.9 5,727,758 - -1.9 5,727,758 - -0.9 5,727,758 - -0.9 5,727,806 + -0.4 5,727,836 + -0.2 5,727,836 + -1.1 5,727,836 + -0.5 5,727,836 + +0.3 5,727,837 - -2.6 5,727,837 - +0.1 5,727,837 - -1.4 5,727,858 + -0.7 5,727,858 + -1.9 5,727,859 - -1.9 5,727,859 - -2.7 5,728,124 + QEN71_RS25700 0.29 -1.2 5,728,125 - QEN71_RS25700 0.29 -0.2 5,728,127 + QEN71_RS25700 0.29 +0.1 5,728,128 - QEN71_RS25700 0.29 -2.2 5,728,244 + QEN71_RS25700 0.40 -0.5 5,728,245 - QEN71_RS25700 0.40 -0.2 5,728,245 - QEN71_RS25700 0.40 -0.5 5,728,503 - QEN71_RS25700 0.64 -0.2 5,728,570 - QEN71_RS25700 0.70 -1.5 5,728,645 - QEN71_RS25700 0.77 -0.9 5,728,646 + QEN71_RS25700 0.77 -0.2 5,728,646 + QEN71_RS25700 0.77 -1.1 5,728,646 + QEN71_RS25700 0.77 -0.7 5,728,646 + QEN71_RS25700 0.77 +0.1 5,728,647 - QEN71_RS25700 0.77 +0.1 5,728,647 - QEN71_RS25700 0.77 -1.6 5,728,647 - QEN71_RS25700 0.77 -1.1 5,728,647 - QEN71_RS25700 0.77 -0.2 5,728,647 - QEN71_RS25700 0.77 -1.1 5,728,647 - QEN71_RS25700 0.77 -2.6 5,728,733 - QEN71_RS25700 0.85 -0.9 5,728,760 + QEN71_RS25700 0.87 -0.9
Or see this region's nucleotide sequence