Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25245 and QEN71_RS25250 overlap by 4 nucleotides QEN71_RS25250 and QEN71_RS25255 are separated by 18 nucleotides QEN71_RS25255 and QEN71_RS25260 are separated by 238 nucleotides
QEN71_RS25245: QEN71_RS25245 - phosphoadenylyl-sulfate reductase, at 5,616,977 to 5,617,717
_RS25245
QEN71_RS25250: QEN71_RS25250 - DUF934 domain-containing protein, at 5,617,714 to 5,618,259
_RS25250
QEN71_RS25255: QEN71_RS25255 - nitrite/sulfite reductase, at 5,618,278 to 5,619,957
_RS25255
QEN71_RS25260: QEN71_RS25260 - CysB family HTH-type transcriptional regulator, at 5,620,196 to 5,621,137
_RS25260
Position (kb) 5618
5619
5620 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5617.470 kb on + strand, within QEN71_RS25245 at 5617.476 kb on + strand, within QEN71_RS25245 at 5617.717 kb on + strand at 5617.718 kb on - strand at 5617.718 kb on - strand at 5617.793 kb on + strand, within QEN71_RS25250 at 5617.793 kb on + strand, within QEN71_RS25250 at 5617.794 kb on - strand, within QEN71_RS25250 at 5617.794 kb on - strand, within QEN71_RS25250 at 5617.859 kb on + strand, within QEN71_RS25250 at 5617.883 kb on + strand, within QEN71_RS25250 at 5617.883 kb on + strand, within QEN71_RS25250 at 5617.937 kb on + strand, within QEN71_RS25250 at 5617.937 kb on + strand, within QEN71_RS25250 at 5617.937 kb on + strand, within QEN71_RS25250 at 5617.938 kb on - strand, within QEN71_RS25250 at 5617.938 kb on - strand, within QEN71_RS25250 at 5617.938 kb on - strand, within QEN71_RS25250 at 5617.938 kb on - strand, within QEN71_RS25250 at 5617.943 kb on + strand, within QEN71_RS25250 at 5617.944 kb on - strand, within QEN71_RS25250 at 5617.944 kb on - strand, within QEN71_RS25250 at 5618.306 kb on + strand at 5618.306 kb on + strand at 5618.306 kb on + strand at 5618.307 kb on - strand at 5618.307 kb on - strand at 5618.307 kb on - strand at 5618.307 kb on - strand at 5618.345 kb on + strand at 5618.345 kb on + strand at 5618.345 kb on + strand at 5618.346 kb on - strand at 5618.346 kb on - strand at 5618.346 kb on - strand at 5618.346 kb on - strand at 5618.621 kb on + strand, within QEN71_RS25255 at 5618.621 kb on + strand, within QEN71_RS25255 at 5618.621 kb on + strand, within QEN71_RS25255 at 5618.622 kb on - strand, within QEN71_RS25255 at 5618.789 kb on + strand, within QEN71_RS25255 at 5618.790 kb on - strand, within QEN71_RS25255 at 5618.861 kb on + strand, within QEN71_RS25255 at 5618.861 kb on + strand, within QEN71_RS25255 at 5618.862 kb on - strand, within QEN71_RS25255 at 5618.957 kb on + strand, within QEN71_RS25255 at 5619.042 kb on + strand, within QEN71_RS25255 at 5619.042 kb on + strand, within QEN71_RS25255 at 5619.042 kb on + strand, within QEN71_RS25255 at 5619.042 kb on + strand, within QEN71_RS25255 at 5619.043 kb on - strand, within QEN71_RS25255 at 5619.043 kb on - strand, within QEN71_RS25255 at 5619.043 kb on - strand, within QEN71_RS25255 at 5619.065 kb on + strand, within QEN71_RS25255 at 5619.066 kb on - strand, within QEN71_RS25255 at 5619.066 kb on - strand, within QEN71_RS25255 at 5619.084 kb on - strand, within QEN71_RS25255 at 5619.151 kb on + strand, within QEN71_RS25255 at 5619.207 kb on + strand, within QEN71_RS25255 at 5619.218 kb on + strand, within QEN71_RS25255 at 5619.218 kb on + strand, within QEN71_RS25255 at 5619.218 kb on + strand, within QEN71_RS25255 at 5619.218 kb on + strand, within QEN71_RS25255 at 5619.218 kb on + strand, within QEN71_RS25255 at 5619.218 kb on + strand, within QEN71_RS25255 at 5619.218 kb on + strand, within QEN71_RS25255 at 5619.218 kb on + strand, within QEN71_RS25255 at 5619.219 kb on - strand, within QEN71_RS25255 at 5619.219 kb on - strand, within QEN71_RS25255 at 5619.219 kb on - strand, within QEN71_RS25255 at 5619.219 kb on - strand, within QEN71_RS25255 at 5619.219 kb on - strand, within QEN71_RS25255 at 5619.219 kb on - strand, within QEN71_RS25255 at 5619.248 kb on + strand, within QEN71_RS25255 at 5619.248 kb on + strand, within QEN71_RS25255 at 5619.249 kb on - strand, within QEN71_RS25255 at 5619.249 kb on - strand, within QEN71_RS25255 at 5619.249 kb on - strand, within QEN71_RS25255 at 5619.249 kb on - strand, within QEN71_RS25255 at 5619.260 kb on - strand, within QEN71_RS25255 at 5619.273 kb on - strand, within QEN71_RS25255 at 5619.395 kb on + strand, within QEN71_RS25255 at 5619.395 kb on + strand, within QEN71_RS25255 at 5619.680 kb on + strand, within QEN71_RS25255 at 5619.680 kb on + strand, within QEN71_RS25255 at 5619.680 kb on + strand, within QEN71_RS25255 at 5619.681 kb on - strand, within QEN71_RS25255 at 5619.681 kb on - strand, within QEN71_RS25255 at 5619.681 kb on - strand, within QEN71_RS25255 at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.803 kb on + strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.804 kb on - strand at 5619.818 kb on + strand at 5619.819 kb on - strand at 5619.819 kb on - strand at 5619.821 kb on + strand at 5619.821 kb on + strand at 5619.821 kb on + strand at 5619.821 kb on + strand at 5619.822 kb on - strand at 5619.822 kb on - strand at 5619.822 kb on - strand at 5619.822 kb on - strand at 5619.938 kb on + strand at 5619.947 kb on + strand at 5619.947 kb on + strand at 5619.947 kb on + strand at 5619.948 kb on - strand at 5619.948 kb on - strand at 5619.948 kb on - strand at 5619.948 kb on - strand at 5619.953 kb on + strand at 5619.953 kb on + strand at 5619.953 kb on + strand at 5619.953 kb on + strand at 5619.954 kb on - strand at 5619.954 kb on - strand at 5619.954 kb on - strand at 5619.954 kb on - strand at 5619.954 kb on - strand at 5619.954 kb on - strand at 5619.954 kb on - strand at 5619.954 kb on - strand at 5619.954 kb on - strand at 5620.068 kb on + strand at 5620.069 kb on - strand at 5620.088 kb on + strand at 5620.088 kb on + strand at 5620.104 kb on + strand at 5620.104 kb on + strand at 5620.104 kb on + strand at 5620.104 kb on + strand at 5620.111 kb on - strand at 5620.133 kb on + strand at 5620.133 kb on + strand at 5620.195 kb on + strand at 5620.196 kb on - strand at 5620.196 kb on - strand at 5620.196 kb on - strand at 5620.274 kb on + strand at 5620.274 kb on + strand at 5620.274 kb on + strand at 5620.274 kb on + strand at 5620.275 kb on - strand at 5620.275 kb on - strand at 5620.275 kb on - strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.276 kb on + strand at 5620.277 kb on - strand at 5620.277 kb on - strand at 5620.277 kb on - strand at 5620.277 kb on - strand at 5620.277 kb on - strand at 5620.277 kb on - strand at 5620.454 kb on + strand, within QEN71_RS25260 at 5620.512 kb on - strand, within QEN71_RS25260 at 5620.512 kb on - strand, within QEN71_RS25260 at 5620.512 kb on - strand, within QEN71_RS25260 at 5620.658 kb on + strand, within QEN71_RS25260 at 5620.658 kb on + strand, within QEN71_RS25260 at 5620.658 kb on + strand, within QEN71_RS25260 at 5620.658 kb on + strand, within QEN71_RS25260 at 5620.658 kb on + strand, within QEN71_RS25260 at 5620.658 kb on + strand, within QEN71_RS25260 at 5620.658 kb on + strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.659 kb on - strand, within QEN71_RS25260 at 5620.660 kb on + strand, within QEN71_RS25260 at 5620.660 kb on + strand, within QEN71_RS25260 at 5620.660 kb on + strand, within QEN71_RS25260 at 5620.660 kb on + strand, within QEN71_RS25260 at 5620.661 kb on - strand, within QEN71_RS25260 at 5620.661 kb on - strand, within QEN71_RS25260 at 5620.784 kb on + strand, within QEN71_RS25260 at 5620.784 kb on + strand, within QEN71_RS25260 at 5620.785 kb on - strand, within QEN71_RS25260 at 5620.785 kb on - strand, within QEN71_RS25260 at 5620.785 kb on - strand, within QEN71_RS25260 at 5620.892 kb on + strand, within QEN71_RS25260 at 5620.892 kb on + strand, within QEN71_RS25260 at 5620.892 kb on + strand, within QEN71_RS25260 at 5620.892 kb on + strand, within QEN71_RS25260 at 5620.892 kb on + strand, within QEN71_RS25260 at 5620.893 kb on - strand, within QEN71_RS25260 at 5620.893 kb on - strand, within QEN71_RS25260 at 5620.893 kb on - strand, within QEN71_RS25260 at 5620.893 kb on - strand, within QEN71_RS25260 at 5620.893 kb on - strand, within QEN71_RS25260
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 5,617,470 + QEN71_RS25245 0.67 -0.1 5,617,476 + QEN71_RS25245 0.67 -0.9 5,617,717 + +0.1 5,617,718 - +0.9 5,617,718 - +0.1 5,617,793 + QEN71_RS25250 0.14 -2.3 5,617,793 + QEN71_RS25250 0.14 -2.7 5,617,794 - QEN71_RS25250 0.15 +0.1 5,617,794 - QEN71_RS25250 0.15 +1.9 5,617,859 + QEN71_RS25250 0.27 -0.2 5,617,883 + QEN71_RS25250 0.31 -3.5 5,617,883 + QEN71_RS25250 0.31 -1.6 5,617,937 + QEN71_RS25250 0.41 -2.4 5,617,937 + QEN71_RS25250 0.41 -2.6 5,617,937 + QEN71_RS25250 0.41 -1.6 5,617,938 - QEN71_RS25250 0.41 -2.4 5,617,938 - QEN71_RS25250 0.41 -1.9 5,617,938 - QEN71_RS25250 0.41 -4.0 5,617,938 - QEN71_RS25250 0.41 -1.5 5,617,943 + QEN71_RS25250 0.42 -1.9 5,617,944 - QEN71_RS25250 0.42 -0.5 5,617,944 - QEN71_RS25250 0.42 -0.5 5,618,306 + -1.3 5,618,306 + -1.9 5,618,306 + -2.9 5,618,307 - -2.8 5,618,307 - -1.3 5,618,307 - -0.7 5,618,307 - -0.3 5,618,345 + -1.6 5,618,345 + -3.2 5,618,345 + -3.8 5,618,346 - -2.8 5,618,346 - -1.9 5,618,346 - -1.5 5,618,346 - -3.1 5,618,621 + QEN71_RS25255 0.20 -4.8 5,618,621 + QEN71_RS25255 0.20 -2.1 5,618,621 + QEN71_RS25255 0.20 -3.8 5,618,622 - QEN71_RS25255 0.20 -0.7 5,618,789 + QEN71_RS25255 0.30 -1.8 5,618,790 - QEN71_RS25255 0.30 -3.0 5,618,861 + QEN71_RS25255 0.35 -1.9 5,618,861 + QEN71_RS25255 0.35 -3.2 5,618,862 - QEN71_RS25255 0.35 +0.1 5,618,957 + QEN71_RS25255 0.40 -2.2 5,619,042 + QEN71_RS25255 0.45 -1.9 5,619,042 + QEN71_RS25255 0.45 -3.0 5,619,042 + QEN71_RS25255 0.45 -1.6 5,619,042 + QEN71_RS25255 0.45 -3.4 5,619,043 - QEN71_RS25255 0.46 -1.6 5,619,043 - QEN71_RS25255 0.46 -0.9 5,619,043 - QEN71_RS25255 0.46 -1.8 5,619,065 + QEN71_RS25255 0.47 -3.1 5,619,066 - QEN71_RS25255 0.47 -1.4 5,619,066 - QEN71_RS25255 0.47 -1.3 5,619,084 - QEN71_RS25255 0.48 -1.4 5,619,151 + QEN71_RS25255 0.52 -1.5 5,619,207 + QEN71_RS25255 0.55 +0.3 5,619,218 + QEN71_RS25255 0.56 -1.6 5,619,218 + QEN71_RS25255 0.56 -2.6 5,619,218 + QEN71_RS25255 0.56 -0.7 5,619,218 + QEN71_RS25255 0.56 -2.7 5,619,218 + QEN71_RS25255 0.56 -2.4 5,619,218 + QEN71_RS25255 0.56 +1.3 5,619,218 + QEN71_RS25255 0.56 -0.4 5,619,218 + QEN71_RS25255 0.56 -2.0 5,619,219 - QEN71_RS25255 0.56 +0.1 5,619,219 - QEN71_RS25255 0.56 -2.6 5,619,219 - QEN71_RS25255 0.56 -2.2 5,619,219 - QEN71_RS25255 0.56 -0.3 5,619,219 - QEN71_RS25255 0.56 -0.2 5,619,219 - QEN71_RS25255 0.56 +0.1 5,619,248 + QEN71_RS25255 0.58 -1.7 5,619,248 + QEN71_RS25255 0.58 -2.6 5,619,249 - QEN71_RS25255 0.58 -2.6 5,619,249 - QEN71_RS25255 0.58 -3.4 5,619,249 - QEN71_RS25255 0.58 -3.7 5,619,249 - QEN71_RS25255 0.58 -1.2 5,619,260 - QEN71_RS25255 0.58 -0.7 5,619,273 - QEN71_RS25255 0.59 -1.2 5,619,395 + QEN71_RS25255 0.66 -2.7 5,619,395 + QEN71_RS25255 0.66 -2.5 5,619,680 + QEN71_RS25255 0.83 +0.1 5,619,680 + QEN71_RS25255 0.83 +0.1 5,619,680 + QEN71_RS25255 0.83 -1.5 5,619,681 - QEN71_RS25255 0.84 -2.9 5,619,681 - QEN71_RS25255 0.84 -4.0 5,619,681 - QEN71_RS25255 0.84 -1.9 5,619,803 + -0.2 5,619,803 + -3.9 5,619,803 + -2.8 5,619,803 + +0.1 5,619,803 + -2.8 5,619,803 + -2.4 5,619,803 + -2.7 5,619,803 + -1.7 5,619,803 + -0.2 5,619,803 + -3.0 5,619,803 + -1.2 5,619,803 + -3.4 5,619,803 + -2.2 5,619,803 + -3.2 5,619,803 + -4.2 5,619,803 + -2.5 5,619,803 + -2.4 5,619,804 - -2.5 5,619,804 - -2.9 5,619,804 - -2.1 5,619,804 - -3.1 5,619,804 - -2.6 5,619,804 - -1.7 5,619,804 - -2.0 5,619,804 - -2.6 5,619,804 - -3.9 5,619,804 - -2.7 5,619,804 - -2.2 5,619,804 - -1.7 5,619,804 - -3.7 5,619,804 - -3.7 5,619,804 - -1.1 5,619,804 - -3.6 5,619,818 + -2.8 5,619,819 - -2.9 5,619,819 - -0.0 5,619,821 + -2.9 5,619,821 + -1.9 5,619,821 + -0.2 5,619,821 + -2.9 5,619,822 - +0.1 5,619,822 - -2.0 5,619,822 - -1.2 5,619,822 - -4.1 5,619,938 + +0.1 5,619,947 + -1.6 5,619,947 + -3.3 5,619,947 + -2.4 5,619,948 - -4.4 5,619,948 - -2.7 5,619,948 - -3.5 5,619,948 - +0.5 5,619,953 + -3.7 5,619,953 + -1.5 5,619,953 + -1.8 5,619,953 + -2.4 5,619,954 - -5.1 5,619,954 - -1.1 5,619,954 - -4.0 5,619,954 - -1.1 5,619,954 - -1.2 5,619,954 - -0.9 5,619,954 - -1.6 5,619,954 - -0.2 5,619,954 - -4.3 5,620,068 + -3.9 5,620,069 - +1.5 5,620,088 + -1.4 5,620,088 + -2.9 5,620,104 + +2.1 5,620,104 + -0.2 5,620,104 + +0.1 5,620,104 + -1.4 5,620,111 - +1.4 5,620,133 + +0.3 5,620,133 + -1.2 5,620,195 + +0.3 5,620,196 - -1.3 5,620,196 - -0.2 5,620,196 - -0.6 5,620,274 + -0.7 5,620,274 + -0.7 5,620,274 + +0.1 5,620,274 + -1.2 5,620,275 - -0.7 5,620,275 - -1.7 5,620,275 - -1.3 5,620,276 + -3.3 5,620,276 + -1.8 5,620,276 + -1.8 5,620,276 + -3.1 5,620,276 + -2.7 5,620,276 + -4.0 5,620,276 + -3.6 5,620,276 + -4.8 5,620,276 + -1.8 5,620,276 + -1.8 5,620,276 + -0.9 5,620,277 - -0.6 5,620,277 - -0.8 5,620,277 - -1.1 5,620,277 - -1.1 5,620,277 - -0.8 5,620,277 - +1.3 5,620,454 + QEN71_RS25260 0.27 -1.5 5,620,512 - QEN71_RS25260 0.34 -1.9 5,620,512 - QEN71_RS25260 0.34 -1.1 5,620,512 - QEN71_RS25260 0.34 -3.6 5,620,658 + QEN71_RS25260 0.49 -3.4 5,620,658 + QEN71_RS25260 0.49 -2.8 5,620,658 + QEN71_RS25260 0.49 -3.0 5,620,658 + QEN71_RS25260 0.49 -4.1 5,620,658 + QEN71_RS25260 0.49 -3.4 5,620,658 + QEN71_RS25260 0.49 -1.1 5,620,658 + QEN71_RS25260 0.49 -1.7 5,620,659 - QEN71_RS25260 0.49 -2.3 5,620,659 - QEN71_RS25260 0.49 -1.8 5,620,659 - QEN71_RS25260 0.49 -1.4 5,620,659 - QEN71_RS25260 0.49 -0.2 5,620,659 - QEN71_RS25260 0.49 -2.4 5,620,659 - QEN71_RS25260 0.49 -1.9 5,620,659 - QEN71_RS25260 0.49 -2.5 5,620,659 - QEN71_RS25260 0.49 -2.1 5,620,659 - QEN71_RS25260 0.49 -3.2 5,620,659 - QEN71_RS25260 0.49 -2.2 5,620,660 + QEN71_RS25260 0.49 -1.8 5,620,660 + QEN71_RS25260 0.49 -3.4 5,620,660 + QEN71_RS25260 0.49 -1.1 5,620,660 + QEN71_RS25260 0.49 -3.5 5,620,661 - QEN71_RS25260 0.49 -2.9 5,620,661 - QEN71_RS25260 0.49 -1.3 5,620,784 + QEN71_RS25260 0.62 -2.8 5,620,784 + QEN71_RS25260 0.62 -3.6 5,620,785 - QEN71_RS25260 0.63 -2.9 5,620,785 - QEN71_RS25260 0.63 -3.9 5,620,785 - QEN71_RS25260 0.63 -2.8 5,620,892 + QEN71_RS25260 0.74 -3.3 5,620,892 + QEN71_RS25260 0.74 +0.1 5,620,892 + QEN71_RS25260 0.74 -1.4 5,620,892 + QEN71_RS25260 0.74 -1.5 5,620,892 + QEN71_RS25260 0.74 -2.3 5,620,893 - QEN71_RS25260 0.74 +0.3 5,620,893 - QEN71_RS25260 0.74 -0.2 5,620,893 - QEN71_RS25260 0.74 -3.0 5,620,893 - QEN71_RS25260 0.74 +0.1 5,620,893 - QEN71_RS25260 0.74 -0.7
Or see this region's nucleotide sequence