Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS24400

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS24395 and QEN71_RS24400 are separated by 301 nucleotidesQEN71_RS24400 and QEN71_RS24405 are separated by 264 nucleotides QEN71_RS24395: QEN71_RS24395 - YebC/PmpR family DNA-binding transcriptional regulator, at 5,427,493 to 5,428,221 _RS24395 QEN71_RS24400: QEN71_RS24400 - phosphoribosylamine--glycine ligase, at 5,428,523 to 5,429,800 _RS24400 QEN71_RS24405: QEN71_RS24405 - oxygen-dependent coproporphyrinogen oxidase, at 5,430,065 to 5,430,997 _RS24405 Position (kb) 5428 5429 5430Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5427.528 kb on + strandat 5427.528 kb on + strandat 5427.528 kb on + strandat 5427.528 kb on + strandat 5427.528 kb on + strandat 5427.528 kb on + strandat 5427.529 kb on - strandat 5427.661 kb on + strand, within QEN71_RS24395at 5427.661 kb on + strand, within QEN71_RS24395at 5427.661 kb on + strand, within QEN71_RS24395at 5427.661 kb on + strand, within QEN71_RS24395at 5427.661 kb on + strand, within QEN71_RS24395at 5427.661 kb on + strand, within QEN71_RS24395at 5427.737 kb on - strand, within QEN71_RS24395at 5427.760 kb on + strand, within QEN71_RS24395at 5427.760 kb on + strand, within QEN71_RS24395at 5427.792 kb on + strand, within QEN71_RS24395at 5427.792 kb on + strand, within QEN71_RS24395at 5427.793 kb on - strand, within QEN71_RS24395at 5427.793 kb on - strand, within QEN71_RS24395at 5427.793 kb on - strand, within QEN71_RS24395at 5427.861 kb on + strand, within QEN71_RS24395at 5427.861 kb on + strand, within QEN71_RS24395at 5427.861 kb on + strand, within QEN71_RS24395at 5427.862 kb on - strand, within QEN71_RS24395at 5428.192 kb on + strandat 5428.192 kb on + strandat 5428.192 kb on + strandat 5428.192 kb on + strandat 5428.192 kb on + strandat 5428.192 kb on + strandat 5428.193 kb on - strandat 5428.193 kb on - strandat 5428.194 kb on + strandat 5428.194 kb on + strandat 5428.194 kb on + strandat 5428.194 kb on + strandat 5428.194 kb on + strandat 5428.194 kb on + strandat 5428.194 kb on + strandat 5428.194 kb on + strandat 5428.194 kb on + strandat 5428.194 kb on + strandat 5428.195 kb on - strandat 5428.311 kb on + strandat 5428.311 kb on + strandat 5428.311 kb on + strandat 5428.311 kb on + strandat 5428.341 kb on + strandat 5428.341 kb on + strandat 5428.377 kb on + strandat 5428.377 kb on + strandat 5428.377 kb on + strandat 5428.377 kb on + strandat 5428.454 kb on + strandat 5428.454 kb on + strandat 5428.454 kb on + strandat 5428.505 kb on + strandat 5428.505 kb on + strandat 5428.530 kb on + strandat 5428.531 kb on - strandat 5428.607 kb on + strandat 5428.607 kb on + strandat 5428.607 kb on + strandat 5428.608 kb on - strandat 5428.916 kb on + strand, within QEN71_RS24400at 5428.916 kb on + strand, within QEN71_RS24400at 5428.916 kb on + strand, within QEN71_RS24400at 5428.916 kb on + strand, within QEN71_RS24400at 5428.916 kb on + strand, within QEN71_RS24400at 5428.916 kb on + strand, within QEN71_RS24400at 5428.916 kb on + strand, within QEN71_RS24400at 5428.916 kb on + strand, within QEN71_RS24400at 5428.916 kb on + strand, within QEN71_RS24400at 5428.917 kb on - strand, within QEN71_RS24400at 5428.917 kb on - strand, within QEN71_RS24400at 5429.213 kb on + strand, within QEN71_RS24400at 5429.227 kb on + strand, within QEN71_RS24400at 5429.227 kb on + strand, within QEN71_RS24400at 5429.227 kb on + strand, within QEN71_RS24400at 5429.227 kb on + strand, within QEN71_RS24400at 5429.227 kb on + strand, within QEN71_RS24400at 5429.227 kb on + strand, within QEN71_RS24400at 5429.227 kb on + strand, within QEN71_RS24400at 5429.256 kb on + strand, within QEN71_RS24400at 5429.256 kb on + strand, within QEN71_RS24400at 5429.256 kb on + strand, within QEN71_RS24400at 5429.256 kb on + strand, within QEN71_RS24400at 5429.257 kb on - strand, within QEN71_RS24400at 5429.257 kb on - strand, within QEN71_RS24400at 5429.327 kb on + strand, within QEN71_RS24400at 5429.537 kb on + strand, within QEN71_RS24400at 5429.537 kb on + strand, within QEN71_RS24400at 5429.537 kb on + strand, within QEN71_RS24400at 5429.538 kb on - strand, within QEN71_RS24400at 5429.538 kb on - strand, within QEN71_RS24400at 5429.753 kb on + strandat 5429.753 kb on + strandat 5429.798 kb on + strandat 5429.903 kb on + strandat 5429.997 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strandat 5430.061 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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5,427,528 + -1.7
5,427,528 + +0.8
5,427,528 + +0.1
5,427,528 + +0.3
5,427,528 + +2.4
5,427,528 + -0.7
5,427,529 - -0.2
5,427,661 + QEN71_RS24395 0.23 -0.2
5,427,661 + QEN71_RS24395 0.23 -0.5
5,427,661 + QEN71_RS24395 0.23 -2.0
5,427,661 + QEN71_RS24395 0.23 +0.5
5,427,661 + QEN71_RS24395 0.23 -1.4
5,427,661 + QEN71_RS24395 0.23 -0.5
5,427,737 - QEN71_RS24395 0.33 -0.2
5,427,760 + QEN71_RS24395 0.37 -0.0
5,427,760 + QEN71_RS24395 0.37 +1.3
5,427,792 + QEN71_RS24395 0.41 -2.4
5,427,792 + QEN71_RS24395 0.41 +0.0
5,427,793 - QEN71_RS24395 0.41 -0.5
5,427,793 - QEN71_RS24395 0.41 -0.5
5,427,793 - QEN71_RS24395 0.41 -2.3
5,427,861 + QEN71_RS24395 0.50 -0.7
5,427,861 + QEN71_RS24395 0.50 -0.1
5,427,861 + QEN71_RS24395 0.50 +0.3
5,427,862 - QEN71_RS24395 0.51 +0.1
5,428,192 + -0.7
5,428,192 + +1.0
5,428,192 + +0.1
5,428,192 + -0.3
5,428,192 + +1.4
5,428,192 + -0.5
5,428,193 - +0.1
5,428,193 - +0.1
5,428,194 + -0.1
5,428,194 + +2.0
5,428,194 + +0.8
5,428,194 + -1.8
5,428,194 + +0.4
5,428,194 + -1.2
5,428,194 + -0.8
5,428,194 + -0.9
5,428,194 + +0.4
5,428,194 + +0.0
5,428,195 - +0.1
5,428,311 + -0.2
5,428,311 + -0.4
5,428,311 + -0.3
5,428,311 + -0.5
5,428,341 + +0.6
5,428,341 + -1.1
5,428,377 + -0.2
5,428,377 + -0.6
5,428,377 + -0.5
5,428,377 + -0.4
5,428,454 + -0.3
5,428,454 + +0.1
5,428,454 + +0.4
5,428,505 + +0.2
5,428,505 + -1.5
5,428,530 + -1.9
5,428,531 - +0.8
5,428,607 + -2.9
5,428,607 + -2.5
5,428,607 + -0.9
5,428,608 - -1.6
5,428,916 + QEN71_RS24400 0.31 -3.6
5,428,916 + QEN71_RS24400 0.31 -1.2
5,428,916 + QEN71_RS24400 0.31 -3.1
5,428,916 + QEN71_RS24400 0.31 -0.7
5,428,916 + QEN71_RS24400 0.31 -2.9
5,428,916 + QEN71_RS24400 0.31 -2.1
5,428,916 + QEN71_RS24400 0.31 -2.2
5,428,916 + QEN71_RS24400 0.31 -2.6
5,428,916 + QEN71_RS24400 0.31 -3.7
5,428,917 - QEN71_RS24400 0.31 -1.2
5,428,917 - QEN71_RS24400 0.31 -0.9
5,429,213 + QEN71_RS24400 0.54 -1.8
5,429,227 + QEN71_RS24400 0.55 -0.7
5,429,227 + QEN71_RS24400 0.55 -2.7
5,429,227 + QEN71_RS24400 0.55 -2.7
5,429,227 + QEN71_RS24400 0.55 -3.2
5,429,227 + QEN71_RS24400 0.55 -2.1
5,429,227 + QEN71_RS24400 0.55 -0.1
5,429,227 + QEN71_RS24400 0.55 -1.8
5,429,256 + QEN71_RS24400 0.57 -0.2
5,429,256 + QEN71_RS24400 0.57 -3.4
5,429,256 + QEN71_RS24400 0.57 -1.6
5,429,256 + QEN71_RS24400 0.57 -3.6
5,429,257 - QEN71_RS24400 0.57 +0.1
5,429,257 - QEN71_RS24400 0.57 +0.1
5,429,327 + QEN71_RS24400 0.63 -2.1
5,429,537 + QEN71_RS24400 0.79 -1.3
5,429,537 + QEN71_RS24400 0.79 -2.0
5,429,537 + QEN71_RS24400 0.79 -3.4
5,429,538 - QEN71_RS24400 0.79 +0.1
5,429,538 - QEN71_RS24400 0.79 -1.2
5,429,753 + -2.4
5,429,753 + -3.0
5,429,798 + -0.5
5,429,903 + -0.7
5,429,997 + -0.1
5,430,061 + +0.5
5,430,061 + -0.7
5,430,061 + -0.0
5,430,061 + -0.2
5,430,061 + -1.9
5,430,061 + +0.6
5,430,061 + +0.3
5,430,061 + -0.0
5,430,061 + +0.3
5,430,061 + -0.1
5,430,061 + +0.3
5,430,061 + +0.3
5,430,061 + -0.3
5,430,061 + -0.4
5,430,061 + -0.7
5,430,061 + -0.4
5,430,061 + +0.4
5,430,061 + +0.0
5,430,061 + -0.6

Or see this region's nucleotide sequence