Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22490

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS22485 and QEN71_RS22490 are separated by 174 nucleotidesQEN71_RS22490 and QEN71_RS22495 are separated by 27 nucleotidesQEN71_RS22495 and QEN71_RS22500 are separated by 2 nucleotidesQEN71_RS22500 and QEN71_RS22505 are separated by 76 nucleotides QEN71_RS22485: QEN71_RS22485 - replicative DNA helicase, at 4,996,797 to 4,998,185 _RS22485 QEN71_RS22490: QEN71_RS22490 - 50S ribosomal protein L9, at 4,998,360 to 4,998,812 _RS22490 QEN71_RS22495: QEN71_RS22495 - 30S ribosomal protein S18, at 4,998,840 to 4,999,115 _RS22495 QEN71_RS22500: QEN71_RS22500 - primosomal replication protein N, at 4,999,118 to 4,999,417 _RS22500 QEN71_RS22505: QEN71_RS22505 - 30S ribosomal protein S6, at 4,999,494 to 4,999,868 _RS22505 Position (kb) 4998 4999Strain fitness (log2 ratio) -1 0 1at 4998.197 kb on - strandat 4998.208 kb on - strandat 4998.208 kb on - strandat 4998.208 kb on - strandat 4998.208 kb on - strandat 4998.208 kb on - strandat 4998.222 kb on - strandat 4998.222 kb on - strandat 4998.222 kb on - strandat 4998.253 kb on + strandat 4998.253 kb on + strandat 4998.253 kb on + strandat 4998.253 kb on + strandat 4998.253 kb on + strandat 4998.254 kb on - strandat 4998.361 kb on + strandat 4998.362 kb on - strandat 4998.362 kb on - strandat 4998.362 kb on - strandat 4998.732 kb on - strand, within QEN71_RS22490at 4998.732 kb on - strand, within QEN71_RS22490at 4998.732 kb on - strand, within QEN71_RS22490at 4998.732 kb on - strand, within QEN71_RS22490at 4998.842 kb on - strandat 4998.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,998,197 - +0.1
4,998,208 - -0.7
4,998,208 - -0.8
4,998,208 - -0.9
4,998,208 - -0.4
4,998,208 - -0.5
4,998,222 - +0.7
4,998,222 - +0.7
4,998,222 - -0.2
4,998,253 + +0.6
4,998,253 + +0.0
4,998,253 + -0.2
4,998,253 + +0.6
4,998,253 + -0.6
4,998,254 - +0.5
4,998,361 + -0.4
4,998,362 - +1.0
4,998,362 - +0.0
4,998,362 - +0.4
4,998,732 - QEN71_RS22490 0.82 -0.5
4,998,732 - QEN71_RS22490 0.82 -1.1
4,998,732 - QEN71_RS22490 0.82 -0.5
4,998,732 - QEN71_RS22490 0.82 -1.1
4,998,842 - -0.9
4,998,863 - -0.9

Or see this region's nucleotide sequence