Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22400

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS22395 and QEN71_RS22400 are separated by 697 nucleotidesQEN71_RS22400 and QEN71_RS22405 are separated by 30 nucleotides QEN71_RS22395: QEN71_RS22395 - molybdopterin molybdotransferase MoeA, at 4,975,011 to 4,976,231 _RS22395 QEN71_RS22400: QEN71_RS22400 - threonine synthase, at 4,976,929 to 4,978,377 _RS22400 QEN71_RS22405: QEN71_RS22405 - homoserine dehydrogenase, at 4,978,408 to 4,979,739 _RS22405 Position (kb) 4976 4977 4978 4979Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4976.326 kb on + strandat 4976.326 kb on + strandat 4976.327 kb on - strandat 4976.499 kb on + strandat 4976.499 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.596 kb on + strandat 4976.622 kb on + strandat 4976.622 kb on + strandat 4976.622 kb on + strandat 4976.622 kb on + strandat 4976.622 kb on + strandat 4976.622 kb on + strandat 4976.622 kb on + strandat 4976.623 kb on - strandat 4976.623 kb on - strandat 4976.623 kb on - strandat 4976.623 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.658 kb on - strandat 4976.937 kb on + strandat 4976.937 kb on + strandat 4976.938 kb on - strandat 4976.938 kb on - strandat 4976.938 kb on - strandat 4976.938 kb on - strandat 4976.938 kb on - strandat 4977.160 kb on - strand, within QEN71_RS22400at 4977.165 kb on + strand, within QEN71_RS22400at 4977.166 kb on - strand, within QEN71_RS22400at 4977.207 kb on + strand, within QEN71_RS22400at 4977.231 kb on + strand, within QEN71_RS22400at 4977.232 kb on - strand, within QEN71_RS22400at 4977.422 kb on + strand, within QEN71_RS22400at 4977.422 kb on + strand, within QEN71_RS22400at 4977.422 kb on + strand, within QEN71_RS22400at 4977.422 kb on + strand, within QEN71_RS22400at 4977.422 kb on + strand, within QEN71_RS22400at 4977.422 kb on + strand, within QEN71_RS22400at 4977.423 kb on - strand, within QEN71_RS22400at 4977.423 kb on - strand, within QEN71_RS22400at 4977.423 kb on - strand, within QEN71_RS22400at 4977.449 kb on + strand, within QEN71_RS22400at 4977.449 kb on + strand, within QEN71_RS22400at 4977.449 kb on + strand, within QEN71_RS22400at 4977.624 kb on - strand, within QEN71_RS22400at 4977.636 kb on - strand, within QEN71_RS22400at 4977.636 kb on - strand, within QEN71_RS22400at 4977.636 kb on - strand, within QEN71_RS22400at 4977.636 kb on - strand, within QEN71_RS22400at 4977.638 kb on + strand, within QEN71_RS22400at 4977.638 kb on + strand, within QEN71_RS22400at 4977.638 kb on + strand, within QEN71_RS22400at 4977.639 kb on - strand, within QEN71_RS22400at 4977.639 kb on - strand, within QEN71_RS22400at 4977.639 kb on - strand, within QEN71_RS22400at 4977.639 kb on - strand, within QEN71_RS22400at 4977.639 kb on - strand, within QEN71_RS22400at 4977.639 kb on - strand, within QEN71_RS22400at 4977.803 kb on + strand, within QEN71_RS22400at 4977.804 kb on - strand, within QEN71_RS22400at 4977.804 kb on - strand, within QEN71_RS22400at 4977.804 kb on - strand, within QEN71_RS22400at 4977.962 kb on + strand, within QEN71_RS22400at 4978.121 kb on + strand, within QEN71_RS22400at 4978.121 kb on + strand, within QEN71_RS22400at 4978.121 kb on + strand, within QEN71_RS22400at 4978.122 kb on - strand, within QEN71_RS22400at 4978.122 kb on - strand, within QEN71_RS22400at 4978.122 kb on - strand, within QEN71_RS22400at 4978.136 kb on + strand, within QEN71_RS22400at 4978.136 kb on + strand, within QEN71_RS22400at 4978.136 kb on + strand, within QEN71_RS22400at 4978.137 kb on - strand, within QEN71_RS22400at 4978.137 kb on - strand, within QEN71_RS22400at 4978.137 kb on - strand, within QEN71_RS22400at 4978.221 kb on - strand, within QEN71_RS22400at 4978.262 kb on + strandat 4978.268 kb on + strandat 4978.283 kb on + strandat 4978.283 kb on + strandat 4978.332 kb on + strandat 4978.332 kb on + strandat 4978.332 kb on + strandat 4978.332 kb on + strandat 4978.333 kb on - strandat 4978.370 kb on + strandat 4978.370 kb on + strandat 4978.370 kb on + strandat 4978.371 kb on - strandat 4978.371 kb on - strandat 4978.391 kb on + strandat 4978.391 kb on + strandat 4978.391 kb on + strandat 4978.391 kb on + strandat 4978.392 kb on - strandat 4978.392 kb on - strandat 4978.392 kb on - strandat 4978.392 kb on - strandat 4978.392 kb on - strandat 4978.392 kb on - strandat 4978.392 kb on - strandat 4978.614 kb on + strand, within QEN71_RS22405at 4978.614 kb on + strand, within QEN71_RS22405at 4978.615 kb on - strand, within QEN71_RS22405at 4978.615 kb on - strand, within QEN71_RS22405at 4978.667 kb on + strand, within QEN71_RS22405at 4978.667 kb on + strand, within QEN71_RS22405at 4978.667 kb on + strand, within QEN71_RS22405at 4978.667 kb on + strand, within QEN71_RS22405at 4978.667 kb on + strand, within QEN71_RS22405at 4978.668 kb on - strand, within QEN71_RS22405at 4978.668 kb on - strand, within QEN71_RS22405at 4978.668 kb on - strand, within QEN71_RS22405at 4978.668 kb on - strand, within QEN71_RS22405at 4978.668 kb on - strand, within QEN71_RS22405at 4978.668 kb on - strand, within QEN71_RS22405at 4978.668 kb on - strand, within QEN71_RS22405at 4978.670 kb on + strand, within QEN71_RS22405at 4978.670 kb on + strand, within QEN71_RS22405at 4978.671 kb on - strand, within QEN71_RS22405at 4978.767 kb on + strand, within QEN71_RS22405at 4978.767 kb on + strand, within QEN71_RS22405at 4978.767 kb on + strand, within QEN71_RS22405at 4978.768 kb on - strand, within QEN71_RS22405at 4978.842 kb on - strand, within QEN71_RS22405at 4978.842 kb on - strand, within QEN71_RS22405at 4978.844 kb on + strand, within QEN71_RS22405at 4978.844 kb on + strand, within QEN71_RS22405at 4978.844 kb on + strand, within QEN71_RS22405at 4978.845 kb on - strand, within QEN71_RS22405at 4978.845 kb on - strand, within QEN71_RS22405at 4978.845 kb on - strand, within QEN71_RS22405at 4979.018 kb on + strand, within QEN71_RS22405at 4979.018 kb on + strand, within QEN71_RS22405at 4979.018 kb on + strand, within QEN71_RS22405at 4979.018 kb on + strand, within QEN71_RS22405at 4979.018 kb on + strand, within QEN71_RS22405at 4979.018 kb on + strand, within QEN71_RS22405at 4979.018 kb on + strand, within QEN71_RS22405at 4979.019 kb on - strand, within QEN71_RS22405at 4979.019 kb on - strand, within QEN71_RS22405at 4979.019 kb on - strand, within QEN71_RS22405at 4979.019 kb on - strand, within QEN71_RS22405at 4979.060 kb on + strand, within QEN71_RS22405at 4979.060 kb on + strand, within QEN71_RS22405at 4979.061 kb on - strand, within QEN71_RS22405at 4979.061 kb on - strand, within QEN71_RS22405at 4979.061 kb on - strand, within QEN71_RS22405at 4979.061 kb on - strand, within QEN71_RS22405at 4979.061 kb on - strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.240 kb on + strand, within QEN71_RS22405at 4979.241 kb on - strand, within QEN71_RS22405at 4979.241 kb on - strand, within QEN71_RS22405at 4979.241 kb on - strand, within QEN71_RS22405at 4979.241 kb on - strand, within QEN71_RS22405at 4979.241 kb on - strand, within QEN71_RS22405at 4979.241 kb on - strand, within QEN71_RS22405at 4979.273 kb on + strand, within QEN71_RS22405at 4979.273 kb on + strand, within QEN71_RS22405at 4979.273 kb on + strand, within QEN71_RS22405at 4979.274 kb on - strand, within QEN71_RS22405at 4979.274 kb on - strand, within QEN71_RS22405at 4979.274 kb on - strand, within QEN71_RS22405at 4979.274 kb on - strand, within QEN71_RS22405at 4979.274 kb on - strand, within QEN71_RS22405at 4979.274 kb on - strand, within QEN71_RS22405

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,976,326 + -2.5
4,976,326 + +0.0
4,976,327 - -0.2
4,976,499 + -0.2
4,976,499 + +0.5
4,976,596 + -1.1
4,976,596 + -1.1
4,976,596 + +1.0
4,976,596 + +0.8
4,976,596 + +0.2
4,976,596 + +0.1
4,976,596 + -0.9
4,976,596 + -0.2
4,976,596 + -0.1
4,976,596 + +0.4
4,976,596 + +0.1
4,976,596 + -0.4
4,976,622 + -0.7
4,976,622 + -0.1
4,976,622 + -0.8
4,976,622 + +0.4
4,976,622 + +1.0
4,976,622 + -0.8
4,976,622 + +0.0
4,976,623 - -0.5
4,976,623 - -0.8
4,976,623 - +1.6
4,976,623 - +0.1
4,976,658 - +0.1
4,976,658 - +0.2
4,976,658 - -0.1
4,976,658 - +0.6
4,976,658 - -0.2
4,976,658 - -0.6
4,976,658 - +0.7
4,976,658 - -0.2
4,976,658 - +0.5
4,976,658 - -1.0
4,976,658 - +0.4
4,976,658 - -0.7
4,976,658 - -0.1
4,976,658 - -1.0
4,976,937 + -3.6
4,976,937 + -2.1
4,976,938 - -1.2
4,976,938 - -0.6
4,976,938 - -0.5
4,976,938 - +1.1
4,976,938 - -0.4
4,977,160 - QEN71_RS22400 0.16 -2.4
4,977,165 + QEN71_RS22400 0.16 -3.6
4,977,166 - QEN71_RS22400 0.16 -0.5
4,977,207 + QEN71_RS22400 0.19 -2.8
4,977,231 + QEN71_RS22400 0.21 -2.7
4,977,232 - QEN71_RS22400 0.21 -1.4
4,977,422 + QEN71_RS22400 0.34 +0.4
4,977,422 + QEN71_RS22400 0.34 -3.6
4,977,422 + QEN71_RS22400 0.34 -0.2
4,977,422 + QEN71_RS22400 0.34 -3.4
4,977,422 + QEN71_RS22400 0.34 -2.2
4,977,422 + QEN71_RS22400 0.34 -2.2
4,977,423 - QEN71_RS22400 0.34 -1.7
4,977,423 - QEN71_RS22400 0.34 -2.3
4,977,423 - QEN71_RS22400 0.34 -2.1
4,977,449 + QEN71_RS22400 0.36 -3.6
4,977,449 + QEN71_RS22400 0.36 -2.0
4,977,449 + QEN71_RS22400 0.36 -2.0
4,977,624 - QEN71_RS22400 0.48 -2.9
4,977,636 - QEN71_RS22400 0.49 -0.9
4,977,636 - QEN71_RS22400 0.49 -3.0
4,977,636 - QEN71_RS22400 0.49 -1.8
4,977,636 - QEN71_RS22400 0.49 -2.5
4,977,638 + QEN71_RS22400 0.49 -0.8
4,977,638 + QEN71_RS22400 0.49 -1.7
4,977,638 + QEN71_RS22400 0.49 -2.9
4,977,639 - QEN71_RS22400 0.49 -0.9
4,977,639 - QEN71_RS22400 0.49 -1.4
4,977,639 - QEN71_RS22400 0.49 -2.7
4,977,639 - QEN71_RS22400 0.49 -1.0
4,977,639 - QEN71_RS22400 0.49 -0.2
4,977,639 - QEN71_RS22400 0.49 -2.0
4,977,803 + QEN71_RS22400 0.60 -4.2
4,977,804 - QEN71_RS22400 0.60 -0.5
4,977,804 - QEN71_RS22400 0.60 -2.4
4,977,804 - QEN71_RS22400 0.60 +0.1
4,977,962 + QEN71_RS22400 0.71 -3.6
4,978,121 + QEN71_RS22400 0.82 -0.5
4,978,121 + QEN71_RS22400 0.82 -3.7
4,978,121 + QEN71_RS22400 0.82 -5.2
4,978,122 - QEN71_RS22400 0.82 -0.1
4,978,122 - QEN71_RS22400 0.82 -3.0
4,978,122 - QEN71_RS22400 0.82 -4.0
4,978,136 + QEN71_RS22400 0.83 -4.4
4,978,136 + QEN71_RS22400 0.83 -2.9
4,978,136 + QEN71_RS22400 0.83 -3.6
4,978,137 - QEN71_RS22400 0.83 -0.7
4,978,137 - QEN71_RS22400 0.83 -1.9
4,978,137 - QEN71_RS22400 0.83 -1.6
4,978,221 - QEN71_RS22400 0.89 -2.5
4,978,262 + -1.7
4,978,268 + -0.9
4,978,283 + -2.7
4,978,283 + -2.7
4,978,332 + -0.5
4,978,332 + +0.7
4,978,332 + -1.4
4,978,332 + -2.5
4,978,333 - -3.7
4,978,370 + -2.3
4,978,370 + -3.7
4,978,370 + -3.4
4,978,371 - -2.1
4,978,371 - -2.0
4,978,391 + -2.8
4,978,391 + -1.7
4,978,391 + -2.7
4,978,391 + -0.1
4,978,392 - -1.2
4,978,392 - -0.9
4,978,392 - +1.1
4,978,392 - -0.5
4,978,392 - -0.0
4,978,392 - -1.1
4,978,392 - -0.0
4,978,614 + QEN71_RS22405 0.15 +0.1
4,978,614 + QEN71_RS22405 0.15 -1.4
4,978,615 - QEN71_RS22405 0.16 -3.2
4,978,615 - QEN71_RS22405 0.16 -2.6
4,978,667 + QEN71_RS22405 0.19 -2.3
4,978,667 + QEN71_RS22405 0.19 -5.2
4,978,667 + QEN71_RS22405 0.19 -2.7
4,978,667 + QEN71_RS22405 0.19 -0.7
4,978,667 + QEN71_RS22405 0.19 -1.2
4,978,668 - QEN71_RS22405 0.20 -2.2
4,978,668 - QEN71_RS22405 0.20 -4.2
4,978,668 - QEN71_RS22405 0.20 -2.9
4,978,668 - QEN71_RS22405 0.20 -3.2
4,978,668 - QEN71_RS22405 0.20 -4.6
4,978,668 - QEN71_RS22405 0.20 -2.3
4,978,668 - QEN71_RS22405 0.20 -1.4
4,978,670 + QEN71_RS22405 0.20 -1.5
4,978,670 + QEN71_RS22405 0.20 -1.9
4,978,671 - QEN71_RS22405 0.20 -3.0
4,978,767 + QEN71_RS22405 0.27 -1.0
4,978,767 + QEN71_RS22405 0.27 -2.6
4,978,767 + QEN71_RS22405 0.27 -2.3
4,978,768 - QEN71_RS22405 0.27 -4.7
4,978,842 - QEN71_RS22405 0.33 -0.0
4,978,842 - QEN71_RS22405 0.33 -2.7
4,978,844 + QEN71_RS22405 0.33 -4.0
4,978,844 + QEN71_RS22405 0.33 -2.8
4,978,844 + QEN71_RS22405 0.33 -3.8
4,978,845 - QEN71_RS22405 0.33 -1.1
4,978,845 - QEN71_RS22405 0.33 -3.6
4,978,845 - QEN71_RS22405 0.33 -4.8
4,979,018 + QEN71_RS22405 0.46 -4.1
4,979,018 + QEN71_RS22405 0.46 -4.4
4,979,018 + QEN71_RS22405 0.46 -3.6
4,979,018 + QEN71_RS22405 0.46 -2.9
4,979,018 + QEN71_RS22405 0.46 -3.0
4,979,018 + QEN71_RS22405 0.46 -2.3
4,979,018 + QEN71_RS22405 0.46 -2.6
4,979,019 - QEN71_RS22405 0.46 -3.8
4,979,019 - QEN71_RS22405 0.46 -3.1
4,979,019 - QEN71_RS22405 0.46 -4.6
4,979,019 - QEN71_RS22405 0.46 -0.2
4,979,060 + QEN71_RS22405 0.49 -2.3
4,979,060 + QEN71_RS22405 0.49 -1.1
4,979,061 - QEN71_RS22405 0.49 -0.7
4,979,061 - QEN71_RS22405 0.49 -5.2
4,979,061 - QEN71_RS22405 0.49 -4.2
4,979,061 - QEN71_RS22405 0.49 -4.6
4,979,061 - QEN71_RS22405 0.49 -3.7
4,979,240 + QEN71_RS22405 0.62 -2.8
4,979,240 + QEN71_RS22405 0.62 -1.8
4,979,240 + QEN71_RS22405 0.62 -3.5
4,979,240 + QEN71_RS22405 0.62 -2.9
4,979,240 + QEN71_RS22405 0.62 -2.5
4,979,240 + QEN71_RS22405 0.62 -1.6
4,979,240 + QEN71_RS22405 0.62 +0.1
4,979,240 + QEN71_RS22405 0.62 -2.9
4,979,240 + QEN71_RS22405 0.62 -4.0
4,979,240 + QEN71_RS22405 0.62 -3.8
4,979,241 - QEN71_RS22405 0.63 -0.7
4,979,241 - QEN71_RS22405 0.63 -4.4
4,979,241 - QEN71_RS22405 0.63 -2.7
4,979,241 - QEN71_RS22405 0.63 -4.7
4,979,241 - QEN71_RS22405 0.63 -4.3
4,979,241 - QEN71_RS22405 0.63 -2.4
4,979,273 + QEN71_RS22405 0.65 -1.1
4,979,273 + QEN71_RS22405 0.65 -5.5
4,979,273 + QEN71_RS22405 0.65 -2.5
4,979,274 - QEN71_RS22405 0.65 -3.3
4,979,274 - QEN71_RS22405 0.65 -2.6
4,979,274 - QEN71_RS22405 0.65 -5.4
4,979,274 - QEN71_RS22405 0.65 -3.8
4,979,274 - QEN71_RS22405 0.65 -1.8
4,979,274 - QEN71_RS22405 0.65 -1.2

Or see this region's nucleotide sequence