Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22160

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS22155 and QEN71_RS22160 are separated by 201 nucleotidesQEN71_RS22160 and QEN71_RS22165 are separated by 89 nucleotides QEN71_RS22155: QEN71_RS22155 - cytochrome P450, at 4,917,318 to 4,918,541 _RS22155 QEN71_RS22160: QEN71_RS22160 - phosphoserine phosphatase SerB, at 4,918,743 to 4,919,582 _RS22160 QEN71_RS22165: QEN71_RS22165 - cystathionine beta-lyase, at 4,919,672 to 4,920,856 _RS22165 Position (kb) 4918 4919 4920Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4917.943 kb on + strand, within QEN71_RS22155at 4917.944 kb on - strand, within QEN71_RS22155at 4917.944 kb on - strand, within QEN71_RS22155at 4918.312 kb on + strand, within QEN71_RS22155at 4918.312 kb on + strand, within QEN71_RS22155at 4918.313 kb on - strand, within QEN71_RS22155at 4918.313 kb on - strand, within QEN71_RS22155at 4918.453 kb on + strandat 4918.454 kb on - strandat 4918.454 kb on - strandat 4918.619 kb on + strandat 4918.619 kb on + strandat 4918.619 kb on + strandat 4918.619 kb on + strandat 4918.674 kb on + strandat 4918.674 kb on + strandat 4918.679 kb on + strandat 4918.680 kb on - strandat 4918.719 kb on + strandat 4918.719 kb on + strandat 4918.719 kb on + strandat 4918.719 kb on + strandat 4918.720 kb on - strandat 4918.720 kb on - strandat 4918.720 kb on - strandat 4918.820 kb on + strandat 4918.821 kb on - strandat 4918.821 kb on - strandat 4918.821 kb on - strandat 4918.897 kb on - strand, within QEN71_RS22160at 4918.905 kb on - strand, within QEN71_RS22160at 4919.006 kb on + strand, within QEN71_RS22160at 4919.006 kb on + strand, within QEN71_RS22160at 4919.006 kb on + strand, within QEN71_RS22160at 4919.007 kb on - strand, within QEN71_RS22160at 4919.007 kb on - strand, within QEN71_RS22160at 4919.160 kb on + strand, within QEN71_RS22160at 4919.160 kb on + strand, within QEN71_RS22160at 4919.160 kb on + strand, within QEN71_RS22160at 4919.161 kb on - strand, within QEN71_RS22160at 4919.161 kb on - strand, within QEN71_RS22160at 4919.161 kb on - strand, within QEN71_RS22160at 4919.179 kb on + strand, within QEN71_RS22160at 4919.179 kb on + strand, within QEN71_RS22160at 4919.179 kb on + strand, within QEN71_RS22160at 4919.179 kb on + strand, within QEN71_RS22160at 4919.180 kb on - strand, within QEN71_RS22160at 4919.387 kb on + strand, within QEN71_RS22160at 4919.388 kb on - strand, within QEN71_RS22160at 4919.604 kb on + strandat 4919.604 kb on + strandat 4919.605 kb on - strandat 4919.605 kb on - strandat 4919.605 kb on - strandat 4919.605 kb on - strandat 4919.609 kb on + strandat 4919.611 kb on + strandat 4919.611 kb on + strandat 4919.665 kb on + strandat 4919.665 kb on + strandat 4919.739 kb on + strandat 4919.739 kb on + strandat 4919.739 kb on + strandat 4919.740 kb on - strandat 4919.782 kb on + strandat 4919.802 kb on + strand, within QEN71_RS22165at 4919.802 kb on + strand, within QEN71_RS22165at 4919.802 kb on + strand, within QEN71_RS22165at 4919.802 kb on + strand, within QEN71_RS22165at 4919.802 kb on + strand, within QEN71_RS22165at 4919.803 kb on - strand, within QEN71_RS22165at 4919.803 kb on - strand, within QEN71_RS22165at 4919.803 kb on - strand, within QEN71_RS22165at 4919.891 kb on + strand, within QEN71_RS22165at 4919.893 kb on + strand, within QEN71_RS22165at 4919.893 kb on + strand, within QEN71_RS22165at 4919.893 kb on + strand, within QEN71_RS22165at 4919.894 kb on - strand, within QEN71_RS22165at 4919.894 kb on - strand, within QEN71_RS22165at 4919.894 kb on - strand, within QEN71_RS22165at 4919.894 kb on - strand, within QEN71_RS22165at 4919.895 kb on + strand, within QEN71_RS22165at 4919.896 kb on - strand, within QEN71_RS22165at 4919.952 kb on + strand, within QEN71_RS22165at 4919.952 kb on + strand, within QEN71_RS22165at 4919.952 kb on + strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4920.222 kb on + strand, within QEN71_RS22165at 4920.352 kb on + strand, within QEN71_RS22165at 4920.353 kb on - strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.456 kb on + strand, within QEN71_RS22165at 4920.456 kb on + strand, within QEN71_RS22165at 4920.457 kb on - strand, within QEN71_RS22165at 4920.516 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.568 kb on - strand, within QEN71_RS22165

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,917,943 + QEN71_RS22155 0.51 -1.0
4,917,944 - QEN71_RS22155 0.51 -0.1
4,917,944 - QEN71_RS22155 0.51 +0.3
4,918,312 + QEN71_RS22155 0.81 -1.5
4,918,312 + QEN71_RS22155 0.81 +0.3
4,918,313 - QEN71_RS22155 0.81 -0.8
4,918,313 - QEN71_RS22155 0.81 +2.1
4,918,453 + +0.2
4,918,454 - +0.2
4,918,454 - -0.2
4,918,619 + -0.1
4,918,619 + -0.4
4,918,619 + -2.2
4,918,619 + -1.8
4,918,674 + -1.8
4,918,674 + +0.1
4,918,679 + -1.9
4,918,680 - -2.4
4,918,719 + -0.4
4,918,719 + +0.3
4,918,719 + +0.1
4,918,719 + -1.0
4,918,720 - -1.5
4,918,720 - -2.5
4,918,720 - -2.9
4,918,820 + -3.7
4,918,821 - -3.2
4,918,821 - -4.4
4,918,821 - -3.9
4,918,897 - QEN71_RS22160 0.18 -4.1
4,918,905 - QEN71_RS22160 0.19 -2.7
4,919,006 + QEN71_RS22160 0.31 -2.6
4,919,006 + QEN71_RS22160 0.31 -3.8
4,919,006 + QEN71_RS22160 0.31 -4.1
4,919,007 - QEN71_RS22160 0.31 -3.3
4,919,007 - QEN71_RS22160 0.31 -3.7
4,919,160 + QEN71_RS22160 0.50 -4.4
4,919,160 + QEN71_RS22160 0.50 -3.1
4,919,160 + QEN71_RS22160 0.50 -3.8
4,919,161 - QEN71_RS22160 0.50 -3.4
4,919,161 - QEN71_RS22160 0.50 -2.6
4,919,161 - QEN71_RS22160 0.50 -0.5
4,919,179 + QEN71_RS22160 0.52 -5.4
4,919,179 + QEN71_RS22160 0.52 -3.9
4,919,179 + QEN71_RS22160 0.52 -2.7
4,919,179 + QEN71_RS22160 0.52 -3.6
4,919,180 - QEN71_RS22160 0.52 -3.5
4,919,387 + QEN71_RS22160 0.77 -3.8
4,919,388 - QEN71_RS22160 0.77 -4.4
4,919,604 + -1.0
4,919,604 + +1.1
4,919,605 - +0.5
4,919,605 - -1.3
4,919,605 - -0.4
4,919,605 - +0.8
4,919,609 + -1.0
4,919,611 + +0.3
4,919,611 + -0.2
4,919,665 + -0.6
4,919,665 + -0.7
4,919,739 + +1.1
4,919,739 + -0.6
4,919,739 + -0.7
4,919,740 - -1.4
4,919,782 + +0.3
4,919,802 + QEN71_RS22165 0.11 +0.1
4,919,802 + QEN71_RS22165 0.11 -0.6
4,919,802 + QEN71_RS22165 0.11 +0.2
4,919,802 + QEN71_RS22165 0.11 +0.6
4,919,802 + QEN71_RS22165 0.11 +0.0
4,919,803 - QEN71_RS22165 0.11 -1.4
4,919,803 - QEN71_RS22165 0.11 +0.3
4,919,803 - QEN71_RS22165 0.11 +0.6
4,919,891 + QEN71_RS22165 0.18 -1.4
4,919,893 + QEN71_RS22165 0.19 -1.1
4,919,893 + QEN71_RS22165 0.19 -0.5
4,919,893 + QEN71_RS22165 0.19 -0.7
4,919,894 - QEN71_RS22165 0.19 -0.5
4,919,894 - QEN71_RS22165 0.19 -0.1
4,919,894 - QEN71_RS22165 0.19 +0.5
4,919,894 - QEN71_RS22165 0.19 -0.8
4,919,895 + QEN71_RS22165 0.19 -2.4
4,919,896 - QEN71_RS22165 0.19 +1.1
4,919,952 + QEN71_RS22165 0.24 +0.1
4,919,952 + QEN71_RS22165 0.24 +1.2
4,919,952 + QEN71_RS22165 0.24 +1.1
4,919,953 - QEN71_RS22165 0.24 -0.1
4,919,953 - QEN71_RS22165 0.24 -0.6
4,919,953 - QEN71_RS22165 0.24 -0.2
4,919,953 - QEN71_RS22165 0.24 +0.5
4,919,953 - QEN71_RS22165 0.24 -1.7
4,919,953 - QEN71_RS22165 0.24 -1.4
4,920,222 + QEN71_RS22165 0.46 -0.0
4,920,352 + QEN71_RS22165 0.57 -1.5
4,920,353 - QEN71_RS22165 0.57 -0.2
4,920,453 + QEN71_RS22165 0.66 +0.7
4,920,453 + QEN71_RS22165 0.66 +0.1
4,920,453 + QEN71_RS22165 0.66 -0.7
4,920,453 + QEN71_RS22165 0.66 -2.9
4,920,453 + QEN71_RS22165 0.66 -0.4
4,920,453 + QEN71_RS22165 0.66 +0.3
4,920,454 - QEN71_RS22165 0.66 -0.4
4,920,454 - QEN71_RS22165 0.66 -0.4
4,920,454 - QEN71_RS22165 0.66 +0.1
4,920,454 - QEN71_RS22165 0.66 +1.1
4,920,454 - QEN71_RS22165 0.66 -0.1
4,920,456 + QEN71_RS22165 0.66 -0.3
4,920,456 + QEN71_RS22165 0.66 -0.5
4,920,457 - QEN71_RS22165 0.66 -0.4
4,920,516 + QEN71_RS22165 0.71 -0.4
4,920,567 + QEN71_RS22165 0.76 +2.1
4,920,567 + QEN71_RS22165 0.76 -0.3
4,920,567 + QEN71_RS22165 0.76 +0.0
4,920,567 + QEN71_RS22165 0.76 -2.0
4,920,567 + QEN71_RS22165 0.76 +0.6
4,920,567 + QEN71_RS22165 0.76 -0.0
4,920,567 + QEN71_RS22165 0.76 -0.0
4,920,568 - QEN71_RS22165 0.76 -0.2

Or see this region's nucleotide sequence