Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19595

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS19590 and QEN71_RS19595 are separated by 21 nucleotidesQEN71_RS19595 and QEN71_RS19600 are separated by 4 nucleotides QEN71_RS19590: QEN71_RS19590 - XdhC family protein, at 4,364,181 to 4,365,212 _RS19590 QEN71_RS19595: QEN71_RS19595 - class I adenylate-forming enzyme family protein, at 4,365,234 to 4,366,865 _RS19595 QEN71_RS19600: QEN71_RS19600 - LysR substrate-binding domain-containing protein, at 4,366,870 to 4,367,835 _RS19600 Position (kb) 4365 4366 4367Strain fitness (log2 ratio) -2 -1 0 1at 4364.690 kb on + strand, within QEN71_RS19590at 4364.778 kb on + strand, within QEN71_RS19590at 4364.943 kb on + strand, within QEN71_RS19590at 4364.943 kb on + strand, within QEN71_RS19590at 4364.943 kb on + strand, within QEN71_RS19590at 4364.943 kb on + strand, within QEN71_RS19590at 4364.944 kb on - strand, within QEN71_RS19590at 4364.944 kb on - strand, within QEN71_RS19590at 4365.054 kb on + strand, within QEN71_RS19590at 4365.054 kb on + strand, within QEN71_RS19590at 4365.054 kb on + strand, within QEN71_RS19590at 4365.054 kb on + strand, within QEN71_RS19590at 4365.055 kb on - strand, within QEN71_RS19590at 4365.055 kb on - strand, within QEN71_RS19590at 4365.055 kb on - strand, within QEN71_RS19590at 4365.055 kb on - strand, within QEN71_RS19590at 4365.055 kb on - strand, within QEN71_RS19590at 4365.055 kb on - strand, within QEN71_RS19590at 4365.055 kb on - strand, within QEN71_RS19590at 4365.469 kb on + strand, within QEN71_RS19595at 4365.470 kb on - strand, within QEN71_RS19595at 4366.035 kb on + strand, within QEN71_RS19595at 4366.154 kb on - strand, within QEN71_RS19595at 4366.237 kb on + strand, within QEN71_RS19595at 4366.253 kb on - strand, within QEN71_RS19595at 4366.661 kb on + strand, within QEN71_RS19595at 4367.018 kb on + strand, within QEN71_RS19600at 4367.019 kb on - strand, within QEN71_RS19600at 4367.019 kb on - strand, within QEN71_RS19600at 4367.019 kb on - strand, within QEN71_RS19600at 4367.019 kb on - strand, within QEN71_RS19600at 4367.022 kb on - strand, within QEN71_RS19600at 4367.022 kb on - strand, within QEN71_RS19600at 4367.234 kb on + strand, within QEN71_RS19600at 4367.235 kb on - strand, within QEN71_RS19600at 4367.243 kb on + strand, within QEN71_RS19600at 4367.243 kb on + strand, within QEN71_RS19600at 4367.244 kb on - strand, within QEN71_RS19600at 4367.244 kb on - strand, within QEN71_RS19600at 4367.249 kb on + strand, within QEN71_RS19600at 4367.249 kb on + strand, within QEN71_RS19600at 4367.249 kb on + strand, within QEN71_RS19600at 4367.249 kb on + strand, within QEN71_RS19600at 4367.249 kb on + strand, within QEN71_RS19600at 4367.250 kb on - strand, within QEN71_RS19600at 4367.414 kb on + strand, within QEN71_RS19600at 4367.414 kb on + strand, within QEN71_RS19600at 4367.477 kb on + strand, within QEN71_RS19600at 4367.526 kb on - strand, within QEN71_RS19600at 4367.526 kb on - strand, within QEN71_RS19600at 4367.820 kb on + strandat 4367.821 kb on + strandat 4367.821 kb on + strandat 4367.821 kb on + strandat 4367.821 kb on + strandat 4367.821 kb on + strandat 4367.822 kb on - strandat 4367.822 kb on - strandat 4367.825 kb on + strandat 4367.825 kb on + strandat 4367.826 kb on - strandat 4367.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,364,690 + QEN71_RS19590 0.49 +0.4
4,364,778 + QEN71_RS19590 0.58 +1.1
4,364,943 + QEN71_RS19590 0.74 -0.5
4,364,943 + QEN71_RS19590 0.74 -0.5
4,364,943 + QEN71_RS19590 0.74 +0.5
4,364,943 + QEN71_RS19590 0.74 -1.9
4,364,944 - QEN71_RS19590 0.74 -0.3
4,364,944 - QEN71_RS19590 0.74 -1.7
4,365,054 + QEN71_RS19590 0.85 -0.4
4,365,054 + QEN71_RS19590 0.85 -0.5
4,365,054 + QEN71_RS19590 0.85 -0.7
4,365,054 + QEN71_RS19590 0.85 -0.8
4,365,055 - QEN71_RS19590 0.85 -0.6
4,365,055 - QEN71_RS19590 0.85 -1.0
4,365,055 - QEN71_RS19590 0.85 -0.7
4,365,055 - QEN71_RS19590 0.85 -1.6
4,365,055 - QEN71_RS19590 0.85 -0.8
4,365,055 - QEN71_RS19590 0.85 -0.5
4,365,055 - QEN71_RS19590 0.85 -0.3
4,365,469 + QEN71_RS19595 0.14 -0.8
4,365,470 - QEN71_RS19595 0.14 +0.2
4,366,035 + QEN71_RS19595 0.49 -2.4
4,366,154 - QEN71_RS19595 0.56 -1.0
4,366,237 + QEN71_RS19595 0.61 -1.2
4,366,253 - QEN71_RS19595 0.62 +0.0
4,366,661 + QEN71_RS19595 0.87 -1.0
4,367,018 + QEN71_RS19600 0.15 +0.8
4,367,019 - QEN71_RS19600 0.15 +0.2
4,367,019 - QEN71_RS19600 0.15 -0.8
4,367,019 - QEN71_RS19600 0.15 -0.7
4,367,019 - QEN71_RS19600 0.15 +0.3
4,367,022 - QEN71_RS19600 0.16 +0.0
4,367,022 - QEN71_RS19600 0.16 +0.9
4,367,234 + QEN71_RS19600 0.38 -2.4
4,367,235 - QEN71_RS19600 0.38 +0.8
4,367,243 + QEN71_RS19600 0.39 +1.1
4,367,243 + QEN71_RS19600 0.39 -0.6
4,367,244 - QEN71_RS19600 0.39 +0.0
4,367,244 - QEN71_RS19600 0.39 +0.7
4,367,249 + QEN71_RS19600 0.39 -0.1
4,367,249 + QEN71_RS19600 0.39 -0.5
4,367,249 + QEN71_RS19600 0.39 -0.3
4,367,249 + QEN71_RS19600 0.39 -1.8
4,367,249 + QEN71_RS19600 0.39 -0.0
4,367,250 - QEN71_RS19600 0.39 +0.1
4,367,414 + QEN71_RS19600 0.56 -0.5
4,367,414 + QEN71_RS19600 0.56 +0.1
4,367,477 + QEN71_RS19600 0.63 +0.4
4,367,526 - QEN71_RS19600 0.68 -0.1
4,367,526 - QEN71_RS19600 0.68 -0.2
4,367,820 + +0.4
4,367,821 + +1.1
4,367,821 + +0.2
4,367,821 + +0.0
4,367,821 + -0.7
4,367,821 + -1.1
4,367,822 - -0.4
4,367,822 - -1.1
4,367,825 + -0.0
4,367,825 + -0.6
4,367,826 - +1.3
4,367,838 - +0.3

Or see this region's nucleotide sequence