Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19015

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS19010 and QEN71_RS19015 are separated by 20 nucleotidesQEN71_RS19015 and QEN71_RS19020 are separated by 594 nucleotides QEN71_RS19010: QEN71_RS19010 - ATP-binding protein, at 4,229,747 to 4,231,210 _RS19010 QEN71_RS19015: QEN71_RS19015 - hypothetical protein, at 4,231,231 to 4,231,440 _RS19015 QEN71_RS19020: QEN71_RS19020 - sigma-54 dependent transcriptional regulator, at 4,232,035 to 4,233,441 _RS19020 Position (kb) 4231 4232Strain fitness (log2 ratio) -1 0 1at 4230.808 kb on + strand, within QEN71_RS19010at 4230.836 kb on - strand, within QEN71_RS19010at 4231.023 kb on + strand, within QEN71_RS19010at 4231.023 kb on + strand, within QEN71_RS19010at 4231.024 kb on - strand, within QEN71_RS19010at 4231.024 kb on - strand, within QEN71_RS19010at 4231.024 kb on - strand, within QEN71_RS19010at 4231.203 kb on + strandat 4231.233 kb on - strandat 4231.408 kb on + strand, within QEN71_RS19015at 4231.431 kb on + strandat 4231.493 kb on + strandat 4231.493 kb on + strandat 4231.494 kb on - strandat 4231.494 kb on - strandat 4231.688 kb on + strandat 4231.943 kb on - strandat 4231.943 kb on - strandat 4232.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,230,808 + QEN71_RS19010 0.72 -0.7
4,230,836 - QEN71_RS19010 0.74 +1.0
4,231,023 + QEN71_RS19010 0.87 +0.3
4,231,023 + QEN71_RS19010 0.87 +1.3
4,231,024 - QEN71_RS19010 0.87 -0.7
4,231,024 - QEN71_RS19010 0.87 -0.6
4,231,024 - QEN71_RS19010 0.87 +0.6
4,231,203 + +0.1
4,231,233 - -1.7
4,231,408 + QEN71_RS19015 0.84 -1.7
4,231,431 + -0.5
4,231,493 + -0.0
4,231,493 + +0.4
4,231,494 - -0.3
4,231,494 - -0.4
4,231,688 + -0.8
4,231,943 - -0.1
4,231,943 - -0.6
4,232,130 - -0.2

Or see this region's nucleotide sequence