Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08645

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08640 and QEN71_RS08645 are separated by 346 nucleotidesQEN71_RS08645 and QEN71_RS08650 are separated by 100 nucleotidesQEN71_RS08650 and QEN71_RS08655 are separated by 151 nucleotides QEN71_RS08640: QEN71_RS08640 - CBS domain-containing protein, at 1,933,131 to 1,933,565 _RS08640 QEN71_RS08645: QEN71_RS08645 - GTP cyclohydrolase II, at 1,933,912 to 1,934,553 _RS08645 QEN71_RS08650: QEN71_RS08650 - cysteine hydrolase family protein, at 1,934,654 to 1,935,199 _RS08650 QEN71_RS08655: QEN71_RS08655 - hypothetical protein, at 1,935,351 to 1,935,638 _RS08655 Position (kb) 1933 1934 1935Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1933.042 kb on - strandat 1933.042 kb on - strandat 1933.042 kb on - strandat 1933.143 kb on + strandat 1933.144 kb on - strandat 1933.144 kb on - strandat 1933.144 kb on - strandat 1933.144 kb on - strandat 1933.144 kb on - strandat 1933.144 kb on - strandat 1933.144 kb on - strandat 1933.147 kb on + strandat 1933.147 kb on + strandat 1933.147 kb on + strandat 1933.147 kb on + strandat 1933.147 kb on + strandat 1933.147 kb on + strandat 1933.147 kb on + strandat 1933.147 kb on + strandat 1933.148 kb on - strandat 1933.148 kb on - strandat 1933.148 kb on - strandat 1933.148 kb on - strandat 1933.148 kb on - strandat 1933.262 kb on + strand, within QEN71_RS08640at 1933.262 kb on + strand, within QEN71_RS08640at 1933.262 kb on + strand, within QEN71_RS08640at 1933.262 kb on + strand, within QEN71_RS08640at 1933.262 kb on + strand, within QEN71_RS08640at 1933.262 kb on + strand, within QEN71_RS08640at 1933.262 kb on + strand, within QEN71_RS08640at 1933.263 kb on - strand, within QEN71_RS08640at 1933.263 kb on - strand, within QEN71_RS08640at 1933.263 kb on - strand, within QEN71_RS08640at 1933.263 kb on - strand, within QEN71_RS08640at 1933.397 kb on - strand, within QEN71_RS08640at 1933.397 kb on - strand, within QEN71_RS08640at 1933.490 kb on - strand, within QEN71_RS08640at 1933.490 kb on - strand, within QEN71_RS08640at 1933.490 kb on - strand, within QEN71_RS08640at 1933.490 kb on - strand, within QEN71_RS08640at 1933.516 kb on + strand, within QEN71_RS08640at 1933.516 kb on + strand, within QEN71_RS08640at 1933.516 kb on + strand, within QEN71_RS08640at 1933.517 kb on - strand, within QEN71_RS08640at 1933.517 kb on - strand, within QEN71_RS08640at 1933.517 kb on - strand, within QEN71_RS08640at 1933.517 kb on - strand, within QEN71_RS08640at 1933.517 kb on - strand, within QEN71_RS08640at 1933.560 kb on - strandat 1933.560 kb on - strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.657 kb on + strandat 1933.658 kb on - strandat 1933.658 kb on - strandat 1933.658 kb on - strandat 1933.658 kb on - strandat 1933.658 kb on - strandat 1933.658 kb on - strandat 1933.658 kb on - strandat 1933.659 kb on + strandat 1933.659 kb on + strandat 1933.659 kb on + strandat 1933.660 kb on - strandat 1933.660 kb on - strandat 1933.660 kb on - strandat 1933.660 kb on - strandat 1933.820 kb on + strandat 1933.820 kb on + strandat 1933.820 kb on + strandat 1933.820 kb on + strandat 1933.821 kb on - strandat 1933.855 kb on + strandat 1933.855 kb on + strandat 1933.856 kb on - strandat 1933.860 kb on + strandat 1933.860 kb on + strandat 1933.861 kb on - strandat 1934.014 kb on + strand, within QEN71_RS08645at 1934.015 kb on - strand, within QEN71_RS08645at 1934.141 kb on - strand, within QEN71_RS08645at 1934.183 kb on - strand, within QEN71_RS08645at 1934.183 kb on - strand, within QEN71_RS08645at 1934.184 kb on + strand, within QEN71_RS08645at 1934.185 kb on - strand, within QEN71_RS08645at 1934.502 kb on + strandat 1934.533 kb on + strandat 1934.533 kb on + strandat 1934.534 kb on - strandat 1934.552 kb on - strandat 1934.552 kb on - strandat 1934.552 kb on - strandat 1934.552 kb on - strandat 1934.552 kb on - strandat 1934.554 kb on + strandat 1934.555 kb on - strandat 1934.555 kb on - strandat 1934.582 kb on + strandat 1934.583 kb on - strandat 1934.806 kb on - strand, within QEN71_RS08650at 1934.987 kb on + strand, within QEN71_RS08650at 1934.987 kb on + strand, within QEN71_RS08650at 1934.987 kb on + strand, within QEN71_RS08650at 1934.988 kb on - strand, within QEN71_RS08650at 1934.988 kb on - strand, within QEN71_RS08650at 1934.988 kb on - strand, within QEN71_RS08650at 1934.988 kb on - strand, within QEN71_RS08650at 1934.993 kb on + strand, within QEN71_RS08650at 1934.993 kb on + strand, within QEN71_RS08650at 1934.994 kb on - strand, within QEN71_RS08650at 1934.994 kb on - strand, within QEN71_RS08650at 1934.994 kb on - strand, within QEN71_RS08650at 1934.994 kb on - strand, within QEN71_RS08650at 1935.041 kb on + strand, within QEN71_RS08650at 1935.042 kb on - strand, within QEN71_RS08650at 1935.042 kb on - strand, within QEN71_RS08650at 1935.042 kb on - strand, within QEN71_RS08650at 1935.042 kb on - strand, within QEN71_RS08650at 1935.053 kb on - strand, within QEN71_RS08650at 1935.106 kb on + strand, within QEN71_RS08650at 1935.106 kb on + strand, within QEN71_RS08650at 1935.107 kb on - strand, within QEN71_RS08650at 1935.107 kb on - strand, within QEN71_RS08650at 1935.107 kb on - strand, within QEN71_RS08650at 1935.107 kb on - strand, within QEN71_RS08650at 1935.107 kb on - strand, within QEN71_RS08650at 1935.181 kb on + strandat 1935.181 kb on + strandat 1935.213 kb on + strandat 1935.213 kb on + strandat 1935.214 kb on - strandat 1935.214 kb on - strandat 1935.328 kb on + strandat 1935.398 kb on + strand, within QEN71_RS08655at 1935.398 kb on + strand, within QEN71_RS08655at 1935.398 kb on + strand, within QEN71_RS08655at 1935.399 kb on - strand, within QEN71_RS08655at 1935.399 kb on - strand, within QEN71_RS08655at 1935.399 kb on - strand, within QEN71_RS08655at 1935.399 kb on - strand, within QEN71_RS08655at 1935.399 kb on - strand, within QEN71_RS08655at 1935.400 kb on + strand, within QEN71_RS08655at 1935.401 kb on - strand, within QEN71_RS08655at 1935.401 kb on - strand, within QEN71_RS08655at 1935.401 kb on - strand, within QEN71_RS08655at 1935.401 kb on - strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.466 kb on + strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.467 kb on - strand, within QEN71_RS08655at 1935.470 kb on + strand, within QEN71_RS08655at 1935.484 kb on + strand, within QEN71_RS08655at 1935.484 kb on + strand, within QEN71_RS08655at 1935.513 kb on + strand, within QEN71_RS08655at 1935.514 kb on + strand, within QEN71_RS08655at 1935.514 kb on + strand, within QEN71_RS08655at 1935.514 kb on + strand, within QEN71_RS08655at 1935.514 kb on + strand, within QEN71_RS08655at 1935.514 kb on + strand, within QEN71_RS08655at 1935.515 kb on - strand, within QEN71_RS08655at 1935.515 kb on - strand, within QEN71_RS08655at 1935.515 kb on - strand, within QEN71_RS08655at 1935.550 kb on + strand, within QEN71_RS08655at 1935.550 kb on + strand, within QEN71_RS08655at 1935.550 kb on + strand, within QEN71_RS08655at 1935.551 kb on - strand, within QEN71_RS08655

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,933,042 - -1.1
1,933,042 - +2.0
1,933,042 - -1.1
1,933,143 + -0.6
1,933,144 - +1.0
1,933,144 - -0.4
1,933,144 - +0.0
1,933,144 - +0.9
1,933,144 - +0.4
1,933,144 - +0.8
1,933,144 - +1.0
1,933,147 + -0.0
1,933,147 + +0.0
1,933,147 + +0.7
1,933,147 + +0.0
1,933,147 + +0.4
1,933,147 + -0.6
1,933,147 + -0.2
1,933,147 + -0.5
1,933,148 - +0.6
1,933,148 - +2.0
1,933,148 - -0.6
1,933,148 - -1.4
1,933,148 - -2.3
1,933,262 + QEN71_RS08640 0.30 -0.3
1,933,262 + QEN71_RS08640 0.30 -0.5
1,933,262 + QEN71_RS08640 0.30 -0.2
1,933,262 + QEN71_RS08640 0.30 -2.2
1,933,262 + QEN71_RS08640 0.30 +0.1
1,933,262 + QEN71_RS08640 0.30 -1.6
1,933,262 + QEN71_RS08640 0.30 +0.4
1,933,263 - QEN71_RS08640 0.30 +0.4
1,933,263 - QEN71_RS08640 0.30 +1.8
1,933,263 - QEN71_RS08640 0.30 -1.7
1,933,263 - QEN71_RS08640 0.30 -0.5
1,933,397 - QEN71_RS08640 0.61 +0.6
1,933,397 - QEN71_RS08640 0.61 -0.0
1,933,490 - QEN71_RS08640 0.83 -0.3
1,933,490 - QEN71_RS08640 0.83 -1.8
1,933,490 - QEN71_RS08640 0.83 -0.0
1,933,490 - QEN71_RS08640 0.83 +1.0
1,933,516 + QEN71_RS08640 0.89 -0.4
1,933,516 + QEN71_RS08640 0.89 -0.1
1,933,516 + QEN71_RS08640 0.89 +0.1
1,933,517 - QEN71_RS08640 0.89 +0.7
1,933,517 - QEN71_RS08640 0.89 +1.3
1,933,517 - QEN71_RS08640 0.89 +2.0
1,933,517 - QEN71_RS08640 0.89 -1.7
1,933,517 - QEN71_RS08640 0.89 +0.8
1,933,560 - -0.1
1,933,560 - +0.4
1,933,657 + -1.8
1,933,657 + -0.2
1,933,657 + +0.4
1,933,657 + -1.0
1,933,657 + -1.4
1,933,657 + +0.0
1,933,657 + -0.7
1,933,657 + -2.2
1,933,657 + -2.9
1,933,657 + -0.6
1,933,657 + -0.6
1,933,657 + -1.2
1,933,658 - -0.7
1,933,658 - -1.9
1,933,658 - -0.4
1,933,658 - +0.1
1,933,658 - +0.7
1,933,658 - +0.7
1,933,658 - -1.6
1,933,659 + +0.5
1,933,659 + +0.4
1,933,659 + +0.0
1,933,660 - -1.2
1,933,660 - -0.4
1,933,660 - -0.1
1,933,660 - -0.2
1,933,820 + -0.5
1,933,820 + -1.3
1,933,820 + -1.3
1,933,820 + -0.3
1,933,821 - +0.6
1,933,855 + -1.4
1,933,855 + -2.9
1,933,856 - -0.3
1,933,860 + +0.2
1,933,860 + +0.8
1,933,861 - -0.1
1,934,014 + QEN71_RS08645 0.16 -0.8
1,934,015 - QEN71_RS08645 0.16 -0.3
1,934,141 - QEN71_RS08645 0.36 -0.3
1,934,183 - QEN71_RS08645 0.42 -1.1
1,934,183 - QEN71_RS08645 0.42 -0.6
1,934,184 + QEN71_RS08645 0.42 +1.0
1,934,185 - QEN71_RS08645 0.43 +0.6
1,934,502 + +0.9
1,934,533 + +0.4
1,934,533 + -0.8
1,934,534 - -1.7
1,934,552 - +1.4
1,934,552 - +0.1
1,934,552 - -0.1
1,934,552 - +0.2
1,934,552 - +1.8
1,934,554 + -1.1
1,934,555 - -0.9
1,934,555 - +0.0
1,934,582 + +1.1
1,934,583 - -0.4
1,934,806 - QEN71_RS08650 0.28 -0.3
1,934,987 + QEN71_RS08650 0.61 -1.2
1,934,987 + QEN71_RS08650 0.61 -0.3
1,934,987 + QEN71_RS08650 0.61 -0.4
1,934,988 - QEN71_RS08650 0.61 -0.5
1,934,988 - QEN71_RS08650 0.61 -0.6
1,934,988 - QEN71_RS08650 0.61 +1.1
1,934,988 - QEN71_RS08650 0.61 -1.1
1,934,993 + QEN71_RS08650 0.62 -1.0
1,934,993 + QEN71_RS08650 0.62 +2.3
1,934,994 - QEN71_RS08650 0.62 -0.6
1,934,994 - QEN71_RS08650 0.62 +0.1
1,934,994 - QEN71_RS08650 0.62 -0.4
1,934,994 - QEN71_RS08650 0.62 +0.6
1,935,041 + QEN71_RS08650 0.71 +0.7
1,935,042 - QEN71_RS08650 0.71 -1.4
1,935,042 - QEN71_RS08650 0.71 -0.3
1,935,042 - QEN71_RS08650 0.71 +0.9
1,935,042 - QEN71_RS08650 0.71 -1.3
1,935,053 - QEN71_RS08650 0.73 +0.2
1,935,106 + QEN71_RS08650 0.83 -0.1
1,935,106 + QEN71_RS08650 0.83 +0.7
1,935,107 - QEN71_RS08650 0.83 -1.0
1,935,107 - QEN71_RS08650 0.83 -0.1
1,935,107 - QEN71_RS08650 0.83 -1.0
1,935,107 - QEN71_RS08650 0.83 -1.4
1,935,107 - QEN71_RS08650 0.83 +0.3
1,935,181 + +0.7
1,935,181 + -0.2
1,935,213 + -1.6
1,935,213 + +0.3
1,935,214 - +0.1
1,935,214 - -1.5
1,935,328 + -0.8
1,935,398 + QEN71_RS08655 0.16 +0.8
1,935,398 + QEN71_RS08655 0.16 -0.2
1,935,398 + QEN71_RS08655 0.16 -0.2
1,935,399 - QEN71_RS08655 0.17 -0.6
1,935,399 - QEN71_RS08655 0.17 -0.6
1,935,399 - QEN71_RS08655 0.17 -1.3
1,935,399 - QEN71_RS08655 0.17 -1.0
1,935,399 - QEN71_RS08655 0.17 +1.8
1,935,400 + QEN71_RS08655 0.17 -0.8
1,935,401 - QEN71_RS08655 0.17 +0.9
1,935,401 - QEN71_RS08655 0.17 -0.8
1,935,401 - QEN71_RS08655 0.17 +1.0
1,935,401 - QEN71_RS08655 0.17 -2.3
1,935,466 + QEN71_RS08655 0.40 -1.0
1,935,466 + QEN71_RS08655 0.40 -0.9
1,935,466 + QEN71_RS08655 0.40 -1.2
1,935,466 + QEN71_RS08655 0.40 -0.8
1,935,466 + QEN71_RS08655 0.40 -1.1
1,935,466 + QEN71_RS08655 0.40 +0.0
1,935,466 + QEN71_RS08655 0.40 +0.5
1,935,466 + QEN71_RS08655 0.40 -0.3
1,935,466 + QEN71_RS08655 0.40 +0.3
1,935,466 + QEN71_RS08655 0.40 -0.3
1,935,467 - QEN71_RS08655 0.40 -1.9
1,935,467 - QEN71_RS08655 0.40 -0.4
1,935,467 - QEN71_RS08655 0.40 +0.2
1,935,467 - QEN71_RS08655 0.40 +1.4
1,935,467 - QEN71_RS08655 0.40 -0.6
1,935,467 - QEN71_RS08655 0.40 +0.6
1,935,467 - QEN71_RS08655 0.40 +0.4
1,935,467 - QEN71_RS08655 0.40 -1.4
1,935,467 - QEN71_RS08655 0.40 +2.0
1,935,467 - QEN71_RS08655 0.40 -0.8
1,935,467 - QEN71_RS08655 0.40 -0.6
1,935,467 - QEN71_RS08655 0.40 -0.4
1,935,467 - QEN71_RS08655 0.40 +0.6
1,935,470 + QEN71_RS08655 0.41 +0.0
1,935,484 + QEN71_RS08655 0.46 +0.2
1,935,484 + QEN71_RS08655 0.46 -1.9
1,935,513 + QEN71_RS08655 0.56 -0.7
1,935,514 + QEN71_RS08655 0.57 -0.5
1,935,514 + QEN71_RS08655 0.57 -0.8
1,935,514 + QEN71_RS08655 0.57 +0.3
1,935,514 + QEN71_RS08655 0.57 +0.6
1,935,514 + QEN71_RS08655 0.57 +0.6
1,935,515 - QEN71_RS08655 0.57 +0.7
1,935,515 - QEN71_RS08655 0.57 -1.6
1,935,515 - QEN71_RS08655 0.57 -0.1
1,935,550 + QEN71_RS08655 0.69 +0.3
1,935,550 + QEN71_RS08655 0.69 -0.6
1,935,550 + QEN71_RS08655 0.69 -0.2
1,935,551 - QEN71_RS08655 0.69 -0.1

Or see this region's nucleotide sequence