Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08140

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08130 and QEN71_RS08135 are separated by 126 nucleotidesQEN71_RS08135 and QEN71_RS08140 are separated by 19 nucleotidesQEN71_RS08140 and QEN71_RS08145 are separated by 27 nucleotides QEN71_RS08130: QEN71_RS08130 - IS481 family transposase, at 1,799,850 to 1,800,989 _RS08130 QEN71_RS08135: QEN71_RS08135 - hypothetical protein, at 1,801,116 to 1,801,268 _RS08135 QEN71_RS08140: QEN71_RS08140 - 2-hydroxyacid dehydrogenase, at 1,801,288 to 1,802,220 _RS08140 QEN71_RS08145: QEN71_RS08145 - OsmC family protein, at 1,802,248 to 1,802,727 _RS08145 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -2 -1 0 1 2at 1801.256 kb on - strandat 1801.578 kb on + strand, within QEN71_RS08140at 1801.579 kb on - strand, within QEN71_RS08140at 1801.796 kb on - strand, within QEN71_RS08140at 1801.847 kb on + strand, within QEN71_RS08140at 1802.054 kb on - strand, within QEN71_RS08140at 1802.311 kb on + strand, within QEN71_RS08145at 1802.355 kb on - strand, within QEN71_RS08145at 1802.428 kb on + strand, within QEN71_RS08145at 1802.429 kb on - strand, within QEN71_RS08145at 1802.429 kb on - strand, within QEN71_RS08145at 1802.492 kb on - strand, within QEN71_RS08145at 1802.862 kb on - strandat 1802.899 kb on - strandat 1802.903 kb on - strandat 1802.910 kb on + strandat 1802.910 kb on + strandat 1802.910 kb on + strandat 1802.910 kb on + strandat 1802.910 kb on + strandat 1802.910 kb on + strandat 1802.910 kb on + strandat 1802.910 kb on + strandat 1802.910 kb on + strandat 1802.911 kb on - strandat 1802.911 kb on - strandat 1802.917 kb on - strandat 1802.917 kb on - strandat 1802.917 kb on - strandat 1802.920 kb on + strandat 1802.920 kb on + strandat 1802.920 kb on + strandat 1802.921 kb on - strandat 1802.921 kb on - strandat 1802.923 kb on + strandat 1802.982 kb on - strandat 1803.042 kb on - strandat 1803.066 kb on - strandat 1803.101 kb on + strandat 1803.116 kb on - strandat 1803.116 kb on - strandat 1803.117 kb on + strandat 1803.197 kb on - strandat 1803.204 kb on + strandat 1803.204 kb on + strandat 1803.205 kb on - strandat 1803.205 kb on - strandat 1803.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,801,256 - -0.8
1,801,578 + QEN71_RS08140 0.31 +0.0
1,801,579 - QEN71_RS08140 0.31 -0.1
1,801,796 - QEN71_RS08140 0.54 -0.6
1,801,847 + QEN71_RS08140 0.60 -1.1
1,802,054 - QEN71_RS08140 0.82 -0.3
1,802,311 + QEN71_RS08145 0.13 -0.4
1,802,355 - QEN71_RS08145 0.22 -1.2
1,802,428 + QEN71_RS08145 0.38 +0.0
1,802,429 - QEN71_RS08145 0.38 -0.3
1,802,429 - QEN71_RS08145 0.38 -1.3
1,802,492 - QEN71_RS08145 0.51 +1.3
1,802,862 - +0.5
1,802,899 - -1.7
1,802,903 - -2.2
1,802,910 + +0.2
1,802,910 + -0.8
1,802,910 + +0.2
1,802,910 + -1.0
1,802,910 + -0.6
1,802,910 + +0.7
1,802,910 + +0.0
1,802,910 + -1.8
1,802,910 + +0.6
1,802,911 - +1.0
1,802,911 - -2.1
1,802,917 - +1.3
1,802,917 - +1.0
1,802,917 - -0.5
1,802,920 + -1.1
1,802,920 + -0.5
1,802,920 + -0.7
1,802,921 - -0.3
1,802,921 - -0.8
1,802,923 + -0.4
1,802,982 - -2.1
1,803,042 - -1.0
1,803,066 - -0.3
1,803,101 + -1.7
1,803,116 - +0.7
1,803,116 - +0.8
1,803,117 + +0.3
1,803,197 - -2.6
1,803,204 + +0.7
1,803,204 + +0.6
1,803,205 - +0.8
1,803,205 - +2.7
1,803,216 - +0.3

Or see this region's nucleotide sequence