Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06545

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06540 and QEN71_RS06545 are separated by 6 nucleotidesQEN71_RS06545 and QEN71_RS06550 are separated by 212 nucleotides QEN71_RS06540: QEN71_RS06540 - IMP dehydrogenase, at 1,452,115 to 1,453,575 _RS06540 QEN71_RS06545: QEN71_RS06545 - hypothetical protein, at 1,453,582 to 1,454,409 _RS06545 QEN71_RS06550: QEN71_RS06550 - glutamine-hydrolyzing GMP synthase, at 1,454,622 to 1,456,205 _RS06550 Position (kb) 1453 1454 1455Strain fitness (log2 ratio) -3 -2 -1 0 1at 1453.573 kb on + strandat 1453.573 kb on + strandat 1453.573 kb on + strandat 1453.573 kb on + strandat 1453.604 kb on + strandat 1453.604 kb on + strandat 1453.604 kb on + strandat 1453.604 kb on + strandat 1453.604 kb on + strandat 1453.675 kb on + strand, within QEN71_RS06545at 1453.675 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1454.331 kb on + strandat 1454.549 kb on + strandat 1454.549 kb on + strandat 1454.549 kb on + strandat 1454.549 kb on + strandat 1454.549 kb on + strandat 1454.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,453,573 + -1.5
1,453,573 + -2.1
1,453,573 + -0.2
1,453,573 + +0.5
1,453,604 + -0.2
1,453,604 + -1.0
1,453,604 + -1.4
1,453,604 + +0.3
1,453,604 + +0.2
1,453,675 + QEN71_RS06545 0.11 -0.9
1,453,675 + QEN71_RS06545 0.11 -0.4
1,453,869 + QEN71_RS06545 0.35 -2.8
1,453,869 + QEN71_RS06545 0.35 -0.6
1,453,869 + QEN71_RS06545 0.35 -0.3
1,453,869 + QEN71_RS06545 0.35 -0.4
1,453,869 + QEN71_RS06545 0.35 -0.5
1,453,869 + QEN71_RS06545 0.35 -2.2
1,453,869 + QEN71_RS06545 0.35 +0.8
1,454,331 + -0.1
1,454,549 + -0.6
1,454,549 + -0.8
1,454,549 + -0.9
1,454,549 + -1.3
1,454,549 + +0.3
1,454,591 + -1.0

Or see this region's nucleotide sequence