Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06455

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06450 and QEN71_RS06455 are separated by 7 nucleotidesQEN71_RS06455 and QEN71_RS06460 are separated by 65 nucleotides QEN71_RS06450: QEN71_RS06450 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 1,432,399 to 1,433,604 _RS06450 QEN71_RS06455: QEN71_RS06455 - RIP metalloprotease RseP, at 1,433,612 to 1,435,000 _RS06455 QEN71_RS06460: QEN71_RS06460 - outer membrane protein assembly factor BamA, at 1,435,066 to 1,437,378 _RS06460 Position (kb) 1433 1434 1435 1436Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1433.611 kb on + strandat 1433.678 kb on + strandat 1433.678 kb on + strandat 1433.678 kb on + strandat 1433.679 kb on - strandat 1433.687 kb on + strandat 1433.687 kb on + strandat 1433.688 kb on - strandat 1433.688 kb on - strandat 1433.816 kb on + strand, within QEN71_RS06455at 1434.246 kb on + strand, within QEN71_RS06455at 1434.413 kb on + strand, within QEN71_RS06455at 1434.413 kb on + strand, within QEN71_RS06455at 1434.413 kb on + strand, within QEN71_RS06455at 1434.413 kb on + strand, within QEN71_RS06455at 1434.413 kb on + strand, within QEN71_RS06455at 1434.413 kb on + strand, within QEN71_RS06455at 1434.413 kb on + strand, within QEN71_RS06455at 1434.413 kb on + strand, within QEN71_RS06455at 1434.414 kb on - strand, within QEN71_RS06455at 1434.414 kb on - strand, within QEN71_RS06455at 1434.414 kb on - strand, within QEN71_RS06455at 1434.414 kb on - strand, within QEN71_RS06455at 1434.414 kb on - strand, within QEN71_RS06455at 1434.489 kb on + strand, within QEN71_RS06455at 1434.498 kb on + strand, within QEN71_RS06455at 1434.498 kb on + strand, within QEN71_RS06455at 1434.656 kb on + strand, within QEN71_RS06455at 1434.737 kb on + strand, within QEN71_RS06455at 1434.801 kb on + strand, within QEN71_RS06455at 1434.801 kb on + strand, within QEN71_RS06455at 1434.801 kb on + strand, within QEN71_RS06455at 1434.801 kb on + strand, within QEN71_RS06455at 1434.801 kb on + strand, within QEN71_RS06455at 1434.801 kb on + strand, within QEN71_RS06455at 1434.825 kb on + strand, within QEN71_RS06455at 1434.825 kb on + strand, within QEN71_RS06455at 1434.825 kb on + strand, within QEN71_RS06455at 1434.858 kb on + strand, within QEN71_RS06455at 1434.858 kb on + strand, within QEN71_RS06455at 1434.858 kb on + strand, within QEN71_RS06455at 1434.858 kb on + strand, within QEN71_RS06455at 1434.860 kb on + strand, within QEN71_RS06455at 1434.860 kb on + strand, within QEN71_RS06455at 1434.860 kb on + strand, within QEN71_RS06455at 1434.863 kb on + strandat 1434.863 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.940 kb on + strandat 1434.987 kb on + strandat 1434.987 kb on + strandat 1434.998 kb on + strandat 1435.045 kb on + strandat 1435.045 kb on + strandat 1435.045 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,433,611 + +0.6
1,433,678 + -1.2
1,433,678 + -1.3
1,433,678 + +0.1
1,433,679 - -0.4
1,433,687 + -2.3
1,433,687 + -0.0
1,433,688 - -0.9
1,433,688 - -0.7
1,433,816 + QEN71_RS06455 0.15 -1.0
1,434,246 + QEN71_RS06455 0.46 +0.6
1,434,413 + QEN71_RS06455 0.58 -1.1
1,434,413 + QEN71_RS06455 0.58 -0.9
1,434,413 + QEN71_RS06455 0.58 -2.5
1,434,413 + QEN71_RS06455 0.58 -2.2
1,434,413 + QEN71_RS06455 0.58 -1.8
1,434,413 + QEN71_RS06455 0.58 -2.6
1,434,413 + QEN71_RS06455 0.58 -1.4
1,434,413 + QEN71_RS06455 0.58 -0.0
1,434,414 - QEN71_RS06455 0.58 +1.1
1,434,414 - QEN71_RS06455 0.58 -3.3
1,434,414 - QEN71_RS06455 0.58 -1.3
1,434,414 - QEN71_RS06455 0.58 +2.5
1,434,414 - QEN71_RS06455 0.58 -0.2
1,434,489 + QEN71_RS06455 0.63 -1.1
1,434,498 + QEN71_RS06455 0.64 -1.9
1,434,498 + QEN71_RS06455 0.64 +0.1
1,434,656 + QEN71_RS06455 0.75 -1.4
1,434,737 + QEN71_RS06455 0.81 -0.2
1,434,801 + QEN71_RS06455 0.86 +0.1
1,434,801 + QEN71_RS06455 0.86 -1.7
1,434,801 + QEN71_RS06455 0.86 -2.3
1,434,801 + QEN71_RS06455 0.86 -2.5
1,434,801 + QEN71_RS06455 0.86 -2.2
1,434,801 + QEN71_RS06455 0.86 -1.1
1,434,825 + QEN71_RS06455 0.87 -1.4
1,434,825 + QEN71_RS06455 0.87 -3.1
1,434,825 + QEN71_RS06455 0.87 -1.6
1,434,858 + QEN71_RS06455 0.90 -1.4
1,434,858 + QEN71_RS06455 0.90 -2.6
1,434,858 + QEN71_RS06455 0.90 -1.8
1,434,858 + QEN71_RS06455 0.90 -2.7
1,434,860 + QEN71_RS06455 0.90 -1.5
1,434,860 + QEN71_RS06455 0.90 -1.4
1,434,860 + QEN71_RS06455 0.90 -2.2
1,434,863 + -1.3
1,434,863 + -1.4
1,434,940 + -1.0
1,434,940 + -1.2
1,434,940 + -2.9
1,434,940 + -1.7
1,434,940 + -0.6
1,434,940 + -2.0
1,434,940 + -3.6
1,434,940 + -2.0
1,434,940 + -1.4
1,434,940 + -1.4
1,434,940 + -3.3
1,434,987 + -1.3
1,434,987 + -0.2
1,434,998 + -2.1
1,435,045 + -0.6
1,435,045 + +0.1
1,435,045 + -0.3

Or see this region's nucleotide sequence