Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS06045 and QEN71_RS06050 are separated by 355 nucleotides QEN71_RS06050 and QEN71_RS06055 are separated by 118 nucleotides QEN71_RS06055 and QEN71_RS06060 are separated by 69 nucleotides
QEN71_RS06045: QEN71_RS06045 - Tex family protein, at 1,341,027 to 1,343,363
_RS06045
QEN71_RS06050: QEN71_RS06050 - colicin transporter, at 1,343,719 to 1,344,534
_RS06050
QEN71_RS06055: QEN71_RS06055 - DUF465 domain-containing protein, at 1,344,653 to 1,344,871
_RS06055
QEN71_RS06060: QEN71_RS06060 - ATP-dependent DNA helicase, at 1,344,941 to 1,347,205
_RS06060
Position (kb)
1343
1344
1345 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1342.720 kb on + strand, within QEN71_RS06045 at 1342.726 kb on + strand, within QEN71_RS06045 at 1342.726 kb on + strand, within QEN71_RS06045 at 1342.726 kb on + strand, within QEN71_RS06045 at 1342.726 kb on + strand, within QEN71_RS06045 at 1342.726 kb on + strand, within QEN71_RS06045 at 1342.727 kb on - strand, within QEN71_RS06045 at 1342.727 kb on - strand, within QEN71_RS06045 at 1342.727 kb on - strand, within QEN71_RS06045 at 1342.727 kb on - strand, within QEN71_RS06045 at 1342.727 kb on - strand, within QEN71_RS06045 at 1342.729 kb on + strand, within QEN71_RS06045 at 1342.807 kb on + strand, within QEN71_RS06045 at 1342.807 kb on + strand, within QEN71_RS06045 at 1342.808 kb on - strand, within QEN71_RS06045 at 1342.808 kb on - strand, within QEN71_RS06045 at 1342.808 kb on - strand, within QEN71_RS06045 at 1342.808 kb on - strand, within QEN71_RS06045 at 1342.808 kb on - strand, within QEN71_RS06045 at 1342.808 kb on - strand, within QEN71_RS06045 at 1342.921 kb on + strand, within QEN71_RS06045 at 1342.921 kb on + strand, within QEN71_RS06045 at 1342.922 kb on - strand, within QEN71_RS06045 at 1342.922 kb on - strand, within QEN71_RS06045 at 1343.035 kb on + strand, within QEN71_RS06045 at 1343.036 kb on - strand, within QEN71_RS06045 at 1343.036 kb on - strand, within QEN71_RS06045 at 1343.036 kb on - strand, within QEN71_RS06045 at 1343.036 kb on - strand, within QEN71_RS06045 at 1343.045 kb on - strand, within QEN71_RS06045 at 1343.045 kb on - strand, within QEN71_RS06045 at 1343.045 kb on - strand, within QEN71_RS06045 at 1343.170 kb on + strand at 1343.170 kb on + strand at 1343.171 kb on - strand at 1343.192 kb on + strand at 1343.193 kb on - strand at 1343.193 kb on - strand at 1343.275 kb on - strand at 1343.334 kb on + strand at 1343.349 kb on + strand at 1343.349 kb on + strand at 1343.349 kb on + strand at 1343.349 kb on + strand at 1343.349 kb on + strand at 1343.350 kb on - strand at 1343.350 kb on - strand at 1343.350 kb on - strand at 1343.350 kb on - strand at 1343.363 kb on + strand at 1343.364 kb on - strand at 1343.484 kb on + strand at 1343.485 kb on - strand at 1343.485 kb on - strand at 1343.485 kb on - strand at 1343.514 kb on + strand at 1343.514 kb on + strand at 1343.514 kb on + strand at 1343.515 kb on - strand at 1343.544 kb on + strand at 1344.102 kb on + strand, within QEN71_RS06050 at 1344.102 kb on + strand, within QEN71_RS06050 at 1344.102 kb on + strand, within QEN71_RS06050 at 1344.102 kb on + strand, within QEN71_RS06050 at 1344.102 kb on + strand, within QEN71_RS06050 at 1344.103 kb on - strand, within QEN71_RS06050 at 1344.103 kb on - strand, within QEN71_RS06050 at 1344.103 kb on - strand, within QEN71_RS06050 at 1344.103 kb on - strand, within QEN71_RS06050 at 1344.103 kb on - strand, within QEN71_RS06050 at 1344.103 kb on - strand, within QEN71_RS06050 at 1344.115 kb on + strand, within QEN71_RS06050 at 1344.115 kb on + strand, within QEN71_RS06050 at 1344.199 kb on + strand, within QEN71_RS06050 at 1344.199 kb on + strand, within QEN71_RS06050 at 1344.200 kb on - strand, within QEN71_RS06050 at 1344.283 kb on + strand, within QEN71_RS06050 at 1344.283 kb on + strand, within QEN71_RS06050 at 1344.379 kb on + strand, within QEN71_RS06050 at 1344.379 kb on + strand, within QEN71_RS06050 at 1344.380 kb on - strand, within QEN71_RS06050 at 1344.532 kb on + strand at 1344.532 kb on + strand at 1344.532 kb on + strand at 1344.532 kb on + strand at 1344.532 kb on + strand at 1344.533 kb on - strand at 1344.545 kb on + strand at 1344.545 kb on + strand at 1344.545 kb on + strand at 1344.545 kb on + strand at 1344.545 kb on + strand at 1344.545 kb on + strand at 1344.545 kb on + strand at 1344.546 kb on - strand at 1344.546 kb on - strand at 1344.571 kb on + strand at 1344.571 kb on + strand at 1344.571 kb on + strand at 1344.571 kb on + strand at 1344.572 kb on - strand at 1344.786 kb on + strand, within QEN71_RS06055 at 1344.786 kb on + strand, within QEN71_RS06055 at 1344.786 kb on + strand, within QEN71_RS06055 at 1344.786 kb on + strand, within QEN71_RS06055 at 1344.786 kb on + strand, within QEN71_RS06055 at 1344.787 kb on - strand, within QEN71_RS06055 at 1344.787 kb on - strand, within QEN71_RS06055 at 1344.787 kb on - strand, within QEN71_RS06055 at 1344.787 kb on - strand, within QEN71_RS06055 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.379 kb on + strand, within QEN71_RS06060 at 1345.380 kb on - strand, within QEN71_RS06060 at 1345.380 kb on - strand, within QEN71_RS06060 at 1345.380 kb on - strand, within QEN71_RS06060 at 1345.380 kb on - strand, within QEN71_RS06060 at 1345.380 kb on - strand, within QEN71_RS06060 at 1345.380 kb on - strand, within QEN71_RS06060 at 1345.380 kb on - strand, within QEN71_RS06060 at 1345.385 kb on + strand, within QEN71_RS06060 at 1345.385 kb on + strand, within QEN71_RS06060 at 1345.385 kb on + strand, within QEN71_RS06060 at 1345.385 kb on + strand, within QEN71_RS06060 at 1345.386 kb on - strand, within QEN71_RS06060 at 1345.386 kb on - strand, within QEN71_RS06060 at 1345.386 kb on - strand, within QEN71_RS06060 at 1345.386 kb on - strand, within QEN71_RS06060 at 1345.386 kb on - strand, within QEN71_RS06060
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,342,720 + QEN71_RS06045 0.72 -0.9 1,342,726 + QEN71_RS06045 0.73 -0.4 1,342,726 + QEN71_RS06045 0.73 +0.6 1,342,726 + QEN71_RS06045 0.73 +0.1 1,342,726 + QEN71_RS06045 0.73 +0.3 1,342,726 + QEN71_RS06045 0.73 +0.1 1,342,727 - QEN71_RS06045 0.73 -2.2 1,342,727 - QEN71_RS06045 0.73 +0.6 1,342,727 - QEN71_RS06045 0.73 +0.1 1,342,727 - QEN71_RS06045 0.73 -1.6 1,342,727 - QEN71_RS06045 0.73 +0.1 1,342,729 + QEN71_RS06045 0.73 -0.8 1,342,807 + QEN71_RS06045 0.76 -1.6 1,342,807 + QEN71_RS06045 0.76 +1.8 1,342,808 - QEN71_RS06045 0.76 +0.1 1,342,808 - QEN71_RS06045 0.76 -0.4 1,342,808 - QEN71_RS06045 0.76 -0.4 1,342,808 - QEN71_RS06045 0.76 +0.9 1,342,808 - QEN71_RS06045 0.76 +0.3 1,342,808 - QEN71_RS06045 0.76 -0.5 1,342,921 + QEN71_RS06045 0.81 -0.5 1,342,921 + QEN71_RS06045 0.81 -1.9 1,342,922 - QEN71_RS06045 0.81 +0.1 1,342,922 - QEN71_RS06045 0.81 -2.0 1,343,035 + QEN71_RS06045 0.86 +0.6 1,343,036 - QEN71_RS06045 0.86 +0.1 1,343,036 - QEN71_RS06045 0.86 +0.1 1,343,036 - QEN71_RS06045 0.86 -0.7 1,343,036 - QEN71_RS06045 0.86 +0.1 1,343,045 - QEN71_RS06045 0.86 -1.7 1,343,045 - QEN71_RS06045 0.86 -0.1 1,343,045 - QEN71_RS06045 0.86 -1.0 1,343,170 + +0.1 1,343,170 + +1.6 1,343,171 - -2.7 1,343,192 + -0.9 1,343,193 - -0.0 1,343,193 - -1.9 1,343,275 - -0.9 1,343,334 + +0.9 1,343,349 + -1.9 1,343,349 + -0.9 1,343,349 + -0.2 1,343,349 + -0.4 1,343,349 + -1.2 1,343,350 - -0.5 1,343,350 - -2.0 1,343,350 - +0.7 1,343,350 - -0.5 1,343,363 + -1.6 1,343,364 - -0.7 1,343,484 + -0.3 1,343,485 - -0.7 1,343,485 - +0.1 1,343,485 - -0.9 1,343,514 + -0.6 1,343,514 + -0.4 1,343,514 + -0.8 1,343,515 - -0.5 1,343,544 + +1.1 1,344,102 + QEN71_RS06050 0.47 -1.1 1,344,102 + QEN71_RS06050 0.47 -0.7 1,344,102 + QEN71_RS06050 0.47 +0.1 1,344,102 + QEN71_RS06050 0.47 -1.1 1,344,102 + QEN71_RS06050 0.47 -0.5 1,344,103 - QEN71_RS06050 0.47 +0.1 1,344,103 - QEN71_RS06050 0.47 +0.1 1,344,103 - QEN71_RS06050 0.47 -0.4 1,344,103 - QEN71_RS06050 0.47 -2.5 1,344,103 - QEN71_RS06050 0.47 +0.1 1,344,103 - QEN71_RS06050 0.47 -1.3 1,344,115 + QEN71_RS06050 0.49 -1.8 1,344,115 + QEN71_RS06050 0.49 -0.9 1,344,199 + QEN71_RS06050 0.59 -1.0 1,344,199 + QEN71_RS06050 0.59 -2.2 1,344,200 - QEN71_RS06050 0.59 -0.9 1,344,283 + QEN71_RS06050 0.69 -0.8 1,344,283 + QEN71_RS06050 0.69 -1.8 1,344,379 + QEN71_RS06050 0.81 -1.1 1,344,379 + QEN71_RS06050 0.81 -1.6 1,344,380 - QEN71_RS06050 0.81 -0.2 1,344,532 + -0.9 1,344,532 + -0.1 1,344,532 + -0.8 1,344,532 + -0.7 1,344,532 + +0.3 1,344,533 - -0.5 1,344,545 + -2.4 1,344,545 + -0.6 1,344,545 + +0.0 1,344,545 + -0.8 1,344,545 + -0.4 1,344,545 + +1.6 1,344,545 + -1.3 1,344,546 - -0.6 1,344,546 - -0.1 1,344,571 + +0.1 1,344,571 + -0.0 1,344,571 + -0.2 1,344,571 + -0.4 1,344,572 - +0.6 1,344,786 + QEN71_RS06055 0.61 -0.4 1,344,786 + QEN71_RS06055 0.61 -0.7 1,344,786 + QEN71_RS06055 0.61 +0.1 1,344,786 + QEN71_RS06055 0.61 -0.1 1,344,786 + QEN71_RS06055 0.61 -1.6 1,344,787 - QEN71_RS06055 0.61 -1.4 1,344,787 - QEN71_RS06055 0.61 -0.8 1,344,787 - QEN71_RS06055 0.61 -0.4 1,344,787 - QEN71_RS06055 0.61 -1.6 1,345,379 + QEN71_RS06060 0.19 +0.1 1,345,379 + QEN71_RS06060 0.19 -0.7 1,345,379 + QEN71_RS06060 0.19 -0.5 1,345,379 + QEN71_RS06060 0.19 +0.8 1,345,379 + QEN71_RS06060 0.19 +0.0 1,345,379 + QEN71_RS06060 0.19 -0.1 1,345,379 + QEN71_RS06060 0.19 -0.7 1,345,379 + QEN71_RS06060 0.19 -1.3 1,345,379 + QEN71_RS06060 0.19 -1.2 1,345,379 + QEN71_RS06060 0.19 +0.1 1,345,379 + QEN71_RS06060 0.19 -0.2 1,345,380 - QEN71_RS06060 0.19 -2.4 1,345,380 - QEN71_RS06060 0.19 +1.1 1,345,380 - QEN71_RS06060 0.19 -1.1 1,345,380 - QEN71_RS06060 0.19 +0.8 1,345,380 - QEN71_RS06060 0.19 -1.1 1,345,380 - QEN71_RS06060 0.19 +2.1 1,345,380 - QEN71_RS06060 0.19 -1.4 1,345,385 + QEN71_RS06060 0.20 -0.1 1,345,385 + QEN71_RS06060 0.20 -1.8 1,345,385 + QEN71_RS06060 0.20 +1.4 1,345,385 + QEN71_RS06060 0.20 -1.5 1,345,386 - QEN71_RS06060 0.20 -1.8 1,345,386 - QEN71_RS06060 0.20 +1.1 1,345,386 - QEN71_RS06060 0.20 +1.2 1,345,386 - QEN71_RS06060 0.20 -0.6 1,345,386 - QEN71_RS06060 0.20 -1.0
Or see this region's nucleotide sequence