Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06050

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06045 and QEN71_RS06050 are separated by 355 nucleotidesQEN71_RS06050 and QEN71_RS06055 are separated by 118 nucleotidesQEN71_RS06055 and QEN71_RS06060 are separated by 69 nucleotides QEN71_RS06045: QEN71_RS06045 - Tex family protein, at 1,341,027 to 1,343,363 _RS06045 QEN71_RS06050: QEN71_RS06050 - colicin transporter, at 1,343,719 to 1,344,534 _RS06050 QEN71_RS06055: QEN71_RS06055 - DUF465 domain-containing protein, at 1,344,653 to 1,344,871 _RS06055 QEN71_RS06060: QEN71_RS06060 - ATP-dependent DNA helicase, at 1,344,941 to 1,347,205 _RS06060 Position (kb) 1343 1344 1345Strain fitness (log2 ratio) -2 -1 0 1 2at 1342.720 kb on + strand, within QEN71_RS06045at 1342.726 kb on + strand, within QEN71_RS06045at 1342.726 kb on + strand, within QEN71_RS06045at 1342.726 kb on + strand, within QEN71_RS06045at 1342.726 kb on + strand, within QEN71_RS06045at 1342.726 kb on + strand, within QEN71_RS06045at 1342.727 kb on - strand, within QEN71_RS06045at 1342.727 kb on - strand, within QEN71_RS06045at 1342.727 kb on - strand, within QEN71_RS06045at 1342.727 kb on - strand, within QEN71_RS06045at 1342.727 kb on - strand, within QEN71_RS06045at 1342.729 kb on + strand, within QEN71_RS06045at 1342.807 kb on + strand, within QEN71_RS06045at 1342.807 kb on + strand, within QEN71_RS06045at 1342.808 kb on - strand, within QEN71_RS06045at 1342.808 kb on - strand, within QEN71_RS06045at 1342.808 kb on - strand, within QEN71_RS06045at 1342.808 kb on - strand, within QEN71_RS06045at 1342.808 kb on - strand, within QEN71_RS06045at 1342.808 kb on - strand, within QEN71_RS06045at 1342.921 kb on + strand, within QEN71_RS06045at 1342.921 kb on + strand, within QEN71_RS06045at 1342.922 kb on - strand, within QEN71_RS06045at 1342.922 kb on - strand, within QEN71_RS06045at 1343.035 kb on + strand, within QEN71_RS06045at 1343.036 kb on - strand, within QEN71_RS06045at 1343.036 kb on - strand, within QEN71_RS06045at 1343.036 kb on - strand, within QEN71_RS06045at 1343.036 kb on - strand, within QEN71_RS06045at 1343.045 kb on - strand, within QEN71_RS06045at 1343.045 kb on - strand, within QEN71_RS06045at 1343.045 kb on - strand, within QEN71_RS06045at 1343.170 kb on + strandat 1343.170 kb on + strandat 1343.171 kb on - strandat 1343.192 kb on + strandat 1343.193 kb on - strandat 1343.193 kb on - strandat 1343.275 kb on - strandat 1343.334 kb on + strandat 1343.349 kb on + strandat 1343.349 kb on + strandat 1343.349 kb on + strandat 1343.349 kb on + strandat 1343.349 kb on + strandat 1343.350 kb on - strandat 1343.350 kb on - strandat 1343.350 kb on - strandat 1343.350 kb on - strandat 1343.363 kb on + strandat 1343.364 kb on - strandat 1343.484 kb on + strandat 1343.485 kb on - strandat 1343.485 kb on - strandat 1343.485 kb on - strandat 1343.514 kb on + strandat 1343.514 kb on + strandat 1343.514 kb on + strandat 1343.515 kb on - strandat 1343.544 kb on + strandat 1344.102 kb on + strand, within QEN71_RS06050at 1344.102 kb on + strand, within QEN71_RS06050at 1344.102 kb on + strand, within QEN71_RS06050at 1344.102 kb on + strand, within QEN71_RS06050at 1344.102 kb on + strand, within QEN71_RS06050at 1344.103 kb on - strand, within QEN71_RS06050at 1344.103 kb on - strand, within QEN71_RS06050at 1344.103 kb on - strand, within QEN71_RS06050at 1344.103 kb on - strand, within QEN71_RS06050at 1344.103 kb on - strand, within QEN71_RS06050at 1344.103 kb on - strand, within QEN71_RS06050at 1344.115 kb on + strand, within QEN71_RS06050at 1344.115 kb on + strand, within QEN71_RS06050at 1344.199 kb on + strand, within QEN71_RS06050at 1344.199 kb on + strand, within QEN71_RS06050at 1344.200 kb on - strand, within QEN71_RS06050at 1344.283 kb on + strand, within QEN71_RS06050at 1344.283 kb on + strand, within QEN71_RS06050at 1344.379 kb on + strand, within QEN71_RS06050at 1344.379 kb on + strand, within QEN71_RS06050at 1344.380 kb on - strand, within QEN71_RS06050at 1344.532 kb on + strandat 1344.532 kb on + strandat 1344.532 kb on + strandat 1344.532 kb on + strandat 1344.532 kb on + strandat 1344.533 kb on - strandat 1344.545 kb on + strandat 1344.545 kb on + strandat 1344.545 kb on + strandat 1344.545 kb on + strandat 1344.545 kb on + strandat 1344.545 kb on + strandat 1344.545 kb on + strandat 1344.546 kb on - strandat 1344.546 kb on - strandat 1344.571 kb on + strandat 1344.571 kb on + strandat 1344.571 kb on + strandat 1344.571 kb on + strandat 1344.572 kb on - strandat 1344.786 kb on + strand, within QEN71_RS06055at 1344.786 kb on + strand, within QEN71_RS06055at 1344.786 kb on + strand, within QEN71_RS06055at 1344.786 kb on + strand, within QEN71_RS06055at 1344.786 kb on + strand, within QEN71_RS06055at 1344.787 kb on - strand, within QEN71_RS06055at 1344.787 kb on - strand, within QEN71_RS06055at 1344.787 kb on - strand, within QEN71_RS06055at 1344.787 kb on - strand, within QEN71_RS06055at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.379 kb on + strand, within QEN71_RS06060at 1345.380 kb on - strand, within QEN71_RS06060at 1345.380 kb on - strand, within QEN71_RS06060at 1345.380 kb on - strand, within QEN71_RS06060at 1345.380 kb on - strand, within QEN71_RS06060at 1345.380 kb on - strand, within QEN71_RS06060at 1345.380 kb on - strand, within QEN71_RS06060at 1345.380 kb on - strand, within QEN71_RS06060at 1345.385 kb on + strand, within QEN71_RS06060at 1345.385 kb on + strand, within QEN71_RS06060at 1345.385 kb on + strand, within QEN71_RS06060at 1345.385 kb on + strand, within QEN71_RS06060at 1345.386 kb on - strand, within QEN71_RS06060at 1345.386 kb on - strand, within QEN71_RS06060at 1345.386 kb on - strand, within QEN71_RS06060at 1345.386 kb on - strand, within QEN71_RS06060at 1345.386 kb on - strand, within QEN71_RS06060

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,342,720 + QEN71_RS06045 0.72 -0.9
1,342,726 + QEN71_RS06045 0.73 -0.4
1,342,726 + QEN71_RS06045 0.73 +0.6
1,342,726 + QEN71_RS06045 0.73 +0.1
1,342,726 + QEN71_RS06045 0.73 +0.3
1,342,726 + QEN71_RS06045 0.73 +0.1
1,342,727 - QEN71_RS06045 0.73 -2.2
1,342,727 - QEN71_RS06045 0.73 +0.6
1,342,727 - QEN71_RS06045 0.73 +0.1
1,342,727 - QEN71_RS06045 0.73 -1.6
1,342,727 - QEN71_RS06045 0.73 +0.1
1,342,729 + QEN71_RS06045 0.73 -0.8
1,342,807 + QEN71_RS06045 0.76 -1.6
1,342,807 + QEN71_RS06045 0.76 +1.8
1,342,808 - QEN71_RS06045 0.76 +0.1
1,342,808 - QEN71_RS06045 0.76 -0.4
1,342,808 - QEN71_RS06045 0.76 -0.4
1,342,808 - QEN71_RS06045 0.76 +0.9
1,342,808 - QEN71_RS06045 0.76 +0.3
1,342,808 - QEN71_RS06045 0.76 -0.5
1,342,921 + QEN71_RS06045 0.81 -0.5
1,342,921 + QEN71_RS06045 0.81 -1.9
1,342,922 - QEN71_RS06045 0.81 +0.1
1,342,922 - QEN71_RS06045 0.81 -2.0
1,343,035 + QEN71_RS06045 0.86 +0.6
1,343,036 - QEN71_RS06045 0.86 +0.1
1,343,036 - QEN71_RS06045 0.86 +0.1
1,343,036 - QEN71_RS06045 0.86 -0.7
1,343,036 - QEN71_RS06045 0.86 +0.1
1,343,045 - QEN71_RS06045 0.86 -1.7
1,343,045 - QEN71_RS06045 0.86 -0.1
1,343,045 - QEN71_RS06045 0.86 -1.0
1,343,170 + +0.1
1,343,170 + +1.6
1,343,171 - -2.7
1,343,192 + -0.9
1,343,193 - -0.0
1,343,193 - -1.9
1,343,275 - -0.9
1,343,334 + +0.9
1,343,349 + -1.9
1,343,349 + -0.9
1,343,349 + -0.2
1,343,349 + -0.4
1,343,349 + -1.2
1,343,350 - -0.5
1,343,350 - -2.0
1,343,350 - +0.7
1,343,350 - -0.5
1,343,363 + -1.6
1,343,364 - -0.7
1,343,484 + -0.3
1,343,485 - -0.7
1,343,485 - +0.1
1,343,485 - -0.9
1,343,514 + -0.6
1,343,514 + -0.4
1,343,514 + -0.8
1,343,515 - -0.5
1,343,544 + +1.1
1,344,102 + QEN71_RS06050 0.47 -1.1
1,344,102 + QEN71_RS06050 0.47 -0.7
1,344,102 + QEN71_RS06050 0.47 +0.1
1,344,102 + QEN71_RS06050 0.47 -1.1
1,344,102 + QEN71_RS06050 0.47 -0.5
1,344,103 - QEN71_RS06050 0.47 +0.1
1,344,103 - QEN71_RS06050 0.47 +0.1
1,344,103 - QEN71_RS06050 0.47 -0.4
1,344,103 - QEN71_RS06050 0.47 -2.5
1,344,103 - QEN71_RS06050 0.47 +0.1
1,344,103 - QEN71_RS06050 0.47 -1.3
1,344,115 + QEN71_RS06050 0.49 -1.8
1,344,115 + QEN71_RS06050 0.49 -0.9
1,344,199 + QEN71_RS06050 0.59 -1.0
1,344,199 + QEN71_RS06050 0.59 -2.2
1,344,200 - QEN71_RS06050 0.59 -0.9
1,344,283 + QEN71_RS06050 0.69 -0.8
1,344,283 + QEN71_RS06050 0.69 -1.8
1,344,379 + QEN71_RS06050 0.81 -1.1
1,344,379 + QEN71_RS06050 0.81 -1.6
1,344,380 - QEN71_RS06050 0.81 -0.2
1,344,532 + -0.9
1,344,532 + -0.1
1,344,532 + -0.8
1,344,532 + -0.7
1,344,532 + +0.3
1,344,533 - -0.5
1,344,545 + -2.4
1,344,545 + -0.6
1,344,545 + +0.0
1,344,545 + -0.8
1,344,545 + -0.4
1,344,545 + +1.6
1,344,545 + -1.3
1,344,546 - -0.6
1,344,546 - -0.1
1,344,571 + +0.1
1,344,571 + -0.0
1,344,571 + -0.2
1,344,571 + -0.4
1,344,572 - +0.6
1,344,786 + QEN71_RS06055 0.61 -0.4
1,344,786 + QEN71_RS06055 0.61 -0.7
1,344,786 + QEN71_RS06055 0.61 +0.1
1,344,786 + QEN71_RS06055 0.61 -0.1
1,344,786 + QEN71_RS06055 0.61 -1.6
1,344,787 - QEN71_RS06055 0.61 -1.4
1,344,787 - QEN71_RS06055 0.61 -0.8
1,344,787 - QEN71_RS06055 0.61 -0.4
1,344,787 - QEN71_RS06055 0.61 -1.6
1,345,379 + QEN71_RS06060 0.19 +0.1
1,345,379 + QEN71_RS06060 0.19 -0.7
1,345,379 + QEN71_RS06060 0.19 -0.5
1,345,379 + QEN71_RS06060 0.19 +0.8
1,345,379 + QEN71_RS06060 0.19 +0.0
1,345,379 + QEN71_RS06060 0.19 -0.1
1,345,379 + QEN71_RS06060 0.19 -0.7
1,345,379 + QEN71_RS06060 0.19 -1.3
1,345,379 + QEN71_RS06060 0.19 -1.2
1,345,379 + QEN71_RS06060 0.19 +0.1
1,345,379 + QEN71_RS06060 0.19 -0.2
1,345,380 - QEN71_RS06060 0.19 -2.4
1,345,380 - QEN71_RS06060 0.19 +1.1
1,345,380 - QEN71_RS06060 0.19 -1.1
1,345,380 - QEN71_RS06060 0.19 +0.8
1,345,380 - QEN71_RS06060 0.19 -1.1
1,345,380 - QEN71_RS06060 0.19 +2.1
1,345,380 - QEN71_RS06060 0.19 -1.4
1,345,385 + QEN71_RS06060 0.20 -0.1
1,345,385 + QEN71_RS06060 0.20 -1.8
1,345,385 + QEN71_RS06060 0.20 +1.4
1,345,385 + QEN71_RS06060 0.20 -1.5
1,345,386 - QEN71_RS06060 0.20 -1.8
1,345,386 - QEN71_RS06060 0.20 +1.1
1,345,386 - QEN71_RS06060 0.20 +1.2
1,345,386 - QEN71_RS06060 0.20 -0.6
1,345,386 - QEN71_RS06060 0.20 -1.0

Or see this region's nucleotide sequence