Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05420

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05410 and QEN71_RS05415 are separated by 22 nucleotidesQEN71_RS05415 and QEN71_RS05420 are separated by 3 nucleotidesQEN71_RS05420 and QEN71_RS05425 are separated by 131 nucleotidesQEN71_RS05425 and QEN71_RS05430 are separated by 129 nucleotides QEN71_RS05410: QEN71_RS05410 - amino acid ABC transporter substrate-binding protein, at 1,197,239 to 1,198,021 _RS05410 QEN71_RS05415: QEN71_RS05415 - amino acid ABC transporter permease, at 1,198,044 to 1,198,721 _RS05415 QEN71_RS05420: QEN71_RS05420 - amino acid ABC transporter ATP-binding protein, at 1,198,725 to 1,199,492 _RS05420 QEN71_RS05425: QEN71_RS05425 - hypothetical protein, at 1,199,624 to 1,200,070 _RS05425 QEN71_RS05430: QEN71_RS05430 - hypothetical protein, at 1,200,200 to 1,200,430 _RS05430 Position (kb) 1198 1199 1200Strain fitness (log2 ratio) -2 -1 0 1 2at 1197.865 kb on + strand, within QEN71_RS05410at 1197.866 kb on - strand, within QEN71_RS05410at 1197.866 kb on - strand, within QEN71_RS05410at 1197.866 kb on - strand, within QEN71_RS05410at 1197.975 kb on - strandat 1197.995 kb on + strandat 1197.995 kb on + strandat 1197.996 kb on - strandat 1198.019 kb on + strandat 1198.019 kb on + strandat 1198.019 kb on + strandat 1198.092 kb on + strandat 1198.092 kb on + strandat 1198.093 kb on - strandat 1198.093 kb on - strandat 1198.093 kb on - strandat 1198.218 kb on + strand, within QEN71_RS05415at 1198.218 kb on + strand, within QEN71_RS05415at 1198.218 kb on + strand, within QEN71_RS05415at 1198.218 kb on + strand, within QEN71_RS05415at 1198.218 kb on + strand, within QEN71_RS05415at 1198.218 kb on + strand, within QEN71_RS05415at 1198.218 kb on + strand, within QEN71_RS05415at 1198.219 kb on - strand, within QEN71_RS05415at 1198.219 kb on - strand, within QEN71_RS05415at 1198.219 kb on - strand, within QEN71_RS05415at 1198.219 kb on - strand, within QEN71_RS05415at 1198.219 kb on - strand, within QEN71_RS05415at 1198.219 kb on - strand, within QEN71_RS05415at 1198.219 kb on - strand, within QEN71_RS05415at 1198.272 kb on + strand, within QEN71_RS05415at 1198.273 kb on - strand, within QEN71_RS05415at 1198.273 kb on - strand, within QEN71_RS05415at 1198.273 kb on - strand, within QEN71_RS05415at 1198.350 kb on + strand, within QEN71_RS05415at 1198.350 kb on + strand, within QEN71_RS05415at 1198.351 kb on - strand, within QEN71_RS05415at 1198.351 kb on - strand, within QEN71_RS05415at 1198.351 kb on - strand, within QEN71_RS05415at 1198.351 kb on - strand, within QEN71_RS05415at 1198.352 kb on + strand, within QEN71_RS05415at 1198.353 kb on - strand, within QEN71_RS05415at 1198.414 kb on - strand, within QEN71_RS05415at 1198.523 kb on + strand, within QEN71_RS05415at 1198.523 kb on + strand, within QEN71_RS05415at 1198.523 kb on + strand, within QEN71_RS05415at 1198.524 kb on - strand, within QEN71_RS05415at 1198.594 kb on - strand, within QEN71_RS05415at 1198.594 kb on - strand, within QEN71_RS05415at 1198.612 kb on - strand, within QEN71_RS05415at 1198.613 kb on + strand, within QEN71_RS05415at 1198.633 kb on - strand, within QEN71_RS05415at 1198.752 kb on + strandat 1199.051 kb on + strand, within QEN71_RS05420at 1199.409 kb on - strand, within QEN71_RS05420at 1199.515 kb on - strandat 1199.545 kb on + strandat 1199.545 kb on + strandat 1199.545 kb on + strandat 1199.545 kb on + strandat 1199.545 kb on + strandat 1199.546 kb on - strandat 1199.546 kb on - strandat 1199.546 kb on - strandat 1199.546 kb on - strandat 1199.546 kb on - strandat 1199.547 kb on + strandat 1199.547 kb on + strandat 1199.548 kb on - strandat 1199.548 kb on - strandat 1199.548 kb on - strandat 1199.590 kb on + strandat 1199.591 kb on - strandat 1199.591 kb on - strandat 1199.591 kb on - strandat 1199.697 kb on - strand, within QEN71_RS05425at 1199.697 kb on - strand, within QEN71_RS05425at 1199.975 kb on + strand, within QEN71_RS05425at 1199.976 kb on - strand, within QEN71_RS05425at 1199.976 kb on - strand, within QEN71_RS05425at 1200.104 kb on - strandat 1200.161 kb on + strandat 1200.161 kb on + strandat 1200.161 kb on + strandat 1200.161 kb on + strandat 1200.161 kb on + strandat 1200.275 kb on + strand, within QEN71_RS05430at 1200.275 kb on + strand, within QEN71_RS05430at 1200.340 kb on - strand, within QEN71_RS05430at 1200.346 kb on + strand, within QEN71_RS05430

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,197,865 + QEN71_RS05410 0.80 +0.3
1,197,866 - QEN71_RS05410 0.80 -0.1
1,197,866 - QEN71_RS05410 0.80 +0.3
1,197,866 - QEN71_RS05410 0.80 +0.3
1,197,975 - -0.2
1,197,995 + -0.9
1,197,995 + -0.3
1,197,996 - +0.3
1,198,019 + -0.5
1,198,019 + -0.4
1,198,019 + +0.3
1,198,092 + -0.6
1,198,092 + +1.4
1,198,093 - -0.2
1,198,093 - -0.6
1,198,093 - +0.6
1,198,218 + QEN71_RS05415 0.26 -0.6
1,198,218 + QEN71_RS05415 0.26 +0.4
1,198,218 + QEN71_RS05415 0.26 -0.7
1,198,218 + QEN71_RS05415 0.26 +0.6
1,198,218 + QEN71_RS05415 0.26 -0.5
1,198,218 + QEN71_RS05415 0.26 -0.7
1,198,218 + QEN71_RS05415 0.26 -2.0
1,198,219 - QEN71_RS05415 0.26 -0.1
1,198,219 - QEN71_RS05415 0.26 -0.5
1,198,219 - QEN71_RS05415 0.26 -0.3
1,198,219 - QEN71_RS05415 0.26 +0.1
1,198,219 - QEN71_RS05415 0.26 -0.7
1,198,219 - QEN71_RS05415 0.26 +0.7
1,198,219 - QEN71_RS05415 0.26 -0.2
1,198,272 + QEN71_RS05415 0.34 -0.9
1,198,273 - QEN71_RS05415 0.34 -1.4
1,198,273 - QEN71_RS05415 0.34 -0.7
1,198,273 - QEN71_RS05415 0.34 -0.3
1,198,350 + QEN71_RS05415 0.45 -0.1
1,198,350 + QEN71_RS05415 0.45 +2.2
1,198,351 - QEN71_RS05415 0.45 -0.9
1,198,351 - QEN71_RS05415 0.45 +0.4
1,198,351 - QEN71_RS05415 0.45 -0.5
1,198,351 - QEN71_RS05415 0.45 -0.1
1,198,352 + QEN71_RS05415 0.45 +1.0
1,198,353 - QEN71_RS05415 0.46 -0.2
1,198,414 - QEN71_RS05415 0.55 +0.0
1,198,523 + QEN71_RS05415 0.71 -0.1
1,198,523 + QEN71_RS05415 0.71 -0.7
1,198,523 + QEN71_RS05415 0.71 +0.1
1,198,524 - QEN71_RS05415 0.71 +0.2
1,198,594 - QEN71_RS05415 0.81 +0.8
1,198,594 - QEN71_RS05415 0.81 -0.2
1,198,612 - QEN71_RS05415 0.84 -0.3
1,198,613 + QEN71_RS05415 0.84 +0.6
1,198,633 - QEN71_RS05415 0.87 +1.1
1,198,752 + -0.1
1,199,051 + QEN71_RS05420 0.42 -1.7
1,199,409 - QEN71_RS05420 0.89 -1.3
1,199,515 - +0.6
1,199,545 + +0.8
1,199,545 + +0.6
1,199,545 + +0.1
1,199,545 + +2.4
1,199,545 + -0.5
1,199,546 - +1.1
1,199,546 - +0.0
1,199,546 - -0.6
1,199,546 - -1.2
1,199,546 - -0.7
1,199,547 + +0.3
1,199,547 + -0.4
1,199,548 - +1.4
1,199,548 - +0.3
1,199,548 - -0.1
1,199,590 + +1.2
1,199,591 - -0.3
1,199,591 - -0.3
1,199,591 - -0.9
1,199,697 - QEN71_RS05425 0.16 -0.7
1,199,697 - QEN71_RS05425 0.16 +0.9
1,199,975 + QEN71_RS05425 0.79 -1.3
1,199,976 - QEN71_RS05425 0.79 -1.0
1,199,976 - QEN71_RS05425 0.79 +1.7
1,200,104 - +2.1
1,200,161 + +0.4
1,200,161 + +0.1
1,200,161 + +0.4
1,200,161 + +1.0
1,200,161 + +1.1
1,200,275 + QEN71_RS05430 0.32 -2.3
1,200,275 + QEN71_RS05430 0.32 -0.9
1,200,340 - QEN71_RS05430 0.61 -0.6
1,200,346 + QEN71_RS05430 0.63 -0.0

Or see this region's nucleotide sequence