Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS05025 and QEN71_RS05030 overlap by 4 nucleotides QEN71_RS05030 and QEN71_RS05035 overlap by 4 nucleotides QEN71_RS05035 and QEN71_RS05040 are separated by 219 nucleotides
QEN71_RS05025: QEN71_RS05025 - branched-chain amino acid ABC transporter permease, at 1,096,738 to 1,097,997
_RS05025
QEN71_RS05030: QEN71_RS05030 - ABC transporter ATP-binding protein, at 1,097,994 to 1,098,764
_RS05030
QEN71_RS05035: QEN71_RS05035 - ABC transporter ATP-binding protein, at 1,098,761 to 1,099,474
_RS05035
QEN71_RS05040: QEN71_RS05040 - hypothetical protein, at 1,099,694 to 1,101,850
_RS05040
Position (kb)
1098
1099
1100 Strain fitness (log2 ratio)
-2
-1
0
1 at 1097.764 kb on + strand, within QEN71_RS05025 at 1097.825 kb on - strand, within QEN71_RS05025 at 1098.184 kb on - strand, within QEN71_RS05030 at 1098.194 kb on + strand, within QEN71_RS05030 at 1098.195 kb on - strand, within QEN71_RS05030 at 1098.441 kb on + strand, within QEN71_RS05030 at 1098.720 kb on + strand at 1098.772 kb on - strand at 1098.925 kb on + strand, within QEN71_RS05035 at 1098.925 kb on + strand, within QEN71_RS05035 at 1099.005 kb on - strand, within QEN71_RS05035 at 1099.707 kb on + strand at 1099.707 kb on + strand at 1099.707 kb on + strand at 1099.707 kb on + strand at 1099.707 kb on + strand at 1099.760 kb on + strand at 1099.760 kb on + strand at 1099.761 kb on - strand at 1100.159 kb on + strand, within QEN71_RS05040 at 1100.159 kb on + strand, within QEN71_RS05040 at 1100.160 kb on - strand, within QEN71_RS05040 at 1100.171 kb on + strand, within QEN71_RS05040
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,097,764 + QEN71_RS05025 0.81 -0.9 1,097,825 - QEN71_RS05025 0.86 -0.3 1,098,184 - QEN71_RS05030 0.25 -1.9 1,098,194 + QEN71_RS05030 0.26 +0.2 1,098,195 - QEN71_RS05030 0.26 -1.9 1,098,441 + QEN71_RS05030 0.58 +1.1 1,098,720 + +0.1 1,098,772 - +1.1 1,098,925 + QEN71_RS05035 0.23 -1.4 1,098,925 + QEN71_RS05035 0.23 +0.7 1,099,005 - QEN71_RS05035 0.34 -2.1 1,099,707 + -0.6 1,099,707 + -0.8 1,099,707 + +0.4 1,099,707 + -0.5 1,099,707 + +0.5 1,099,760 + +0.7 1,099,760 + -0.5 1,099,761 - -0.9 1,100,159 + QEN71_RS05040 0.22 +1.3 1,100,159 + QEN71_RS05040 0.22 -0.0 1,100,160 - QEN71_RS05040 0.22 -0.3 1,100,171 + QEN71_RS05040 0.22 -0.1
Or see this region's nucleotide sequence