Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05035

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05025 and QEN71_RS05030 overlap by 4 nucleotidesQEN71_RS05030 and QEN71_RS05035 overlap by 4 nucleotidesQEN71_RS05035 and QEN71_RS05040 are separated by 219 nucleotides QEN71_RS05025: QEN71_RS05025 - branched-chain amino acid ABC transporter permease, at 1,096,738 to 1,097,997 _RS05025 QEN71_RS05030: QEN71_RS05030 - ABC transporter ATP-binding protein, at 1,097,994 to 1,098,764 _RS05030 QEN71_RS05035: QEN71_RS05035 - ABC transporter ATP-binding protein, at 1,098,761 to 1,099,474 _RS05035 QEN71_RS05040: QEN71_RS05040 - hypothetical protein, at 1,099,694 to 1,101,850 _RS05040 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -2 -1 0 1at 1097.764 kb on + strand, within QEN71_RS05025at 1097.825 kb on - strand, within QEN71_RS05025at 1098.184 kb on - strand, within QEN71_RS05030at 1098.194 kb on + strand, within QEN71_RS05030at 1098.195 kb on - strand, within QEN71_RS05030at 1098.441 kb on + strand, within QEN71_RS05030at 1098.720 kb on + strandat 1098.772 kb on - strandat 1098.925 kb on + strand, within QEN71_RS05035at 1098.925 kb on + strand, within QEN71_RS05035at 1099.005 kb on - strand, within QEN71_RS05035at 1099.707 kb on + strandat 1099.707 kb on + strandat 1099.707 kb on + strandat 1099.707 kb on + strandat 1099.707 kb on + strandat 1099.760 kb on + strandat 1099.760 kb on + strandat 1099.761 kb on - strandat 1100.159 kb on + strand, within QEN71_RS05040at 1100.159 kb on + strand, within QEN71_RS05040at 1100.160 kb on - strand, within QEN71_RS05040at 1100.171 kb on + strand, within QEN71_RS05040

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,097,764 + QEN71_RS05025 0.81 -0.9
1,097,825 - QEN71_RS05025 0.86 -0.3
1,098,184 - QEN71_RS05030 0.25 -1.9
1,098,194 + QEN71_RS05030 0.26 +0.2
1,098,195 - QEN71_RS05030 0.26 -1.9
1,098,441 + QEN71_RS05030 0.58 +1.1
1,098,720 + +0.1
1,098,772 - +1.1
1,098,925 + QEN71_RS05035 0.23 -1.4
1,098,925 + QEN71_RS05035 0.23 +0.7
1,099,005 - QEN71_RS05035 0.34 -2.1
1,099,707 + -0.6
1,099,707 + -0.8
1,099,707 + +0.4
1,099,707 + -0.5
1,099,707 + +0.5
1,099,760 + +0.7
1,099,760 + -0.5
1,099,761 - -0.9
1,100,159 + QEN71_RS05040 0.22 +1.3
1,100,159 + QEN71_RS05040 0.22 -0.0
1,100,160 - QEN71_RS05040 0.22 -0.3
1,100,171 + QEN71_RS05040 0.22 -0.1

Or see this region's nucleotide sequence