Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04225 and QEN71_RS04230 are separated by 93 nucleotides QEN71_RS04230 and QEN71_RS04235 are separated by 163 nucleotides QEN71_RS04235 and QEN71_RS04240 are separated by 24 nucleotides QEN71_RS04240 and QEN71_RS04245 are separated by 11 nucleotides
QEN71_RS04225: QEN71_RS04225 - 50S ribosomal protein L19, at 932,938 to 933,321
_RS04225
QEN71_RS04230: QEN71_RS04230 - CoA pyrophosphatase, at 933,415 to 934,122
_RS04230
QEN71_RS04235: QEN71_RS04235 - CobD/CbiB family protein, at 934,286 to 935,224
_RS04235
QEN71_RS04240: QEN71_RS04240 - DUF2007 domain-containing protein, at 935,249 to 935,569
_RS04240
QEN71_RS04245: QEN71_RS04245 - ribosome small subunit-dependent GTPase A, at 935,581 to 936,534
_RS04245
Position (kb) 934
935
936 Strain fitness (log2 ratio) -2
-1
0
1
2 at 933.319 kb on + strand at 933.319 kb on + strand at 933.319 kb on + strand at 933.376 kb on + strand at 933.376 kb on + strand at 933.376 kb on + strand at 933.376 kb on + strand at 933.376 kb on + strand at 933.376 kb on + strand at 933.376 kb on + strand at 933.376 kb on + strand at 933.376 kb on + strand at 933.377 kb on - strand at 933.377 kb on - strand at 933.377 kb on - strand at 933.377 kb on - strand at 933.377 kb on - strand at 933.377 kb on - strand at 933.377 kb on - strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.382 kb on + strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.383 kb on - strand at 933.611 kb on + strand, within QEN71_RS04230 at 933.612 kb on - strand, within QEN71_RS04230 at 933.785 kb on + strand, within QEN71_RS04230 at 933.785 kb on + strand, within QEN71_RS04230 at 933.785 kb on + strand, within QEN71_RS04230 at 933.785 kb on + strand, within QEN71_RS04230 at 933.786 kb on - strand, within QEN71_RS04230 at 933.786 kb on - strand, within QEN71_RS04230 at 933.832 kb on + strand, within QEN71_RS04230 at 934.060 kb on + strand at 934.060 kb on + strand at 934.060 kb on + strand at 934.060 kb on + strand at 934.060 kb on + strand at 934.102 kb on + strand at 934.125 kb on + strand at 934.125 kb on + strand at 934.125 kb on + strand at 934.126 kb on - strand at 934.126 kb on - strand at 934.126 kb on - strand at 934.126 kb on - strand at 934.139 kb on + strand at 934.139 kb on + strand at 934.140 kb on - strand at 934.140 kb on - strand at 934.160 kb on + strand at 934.160 kb on + strand at 934.160 kb on + strand at 934.160 kb on + strand at 934.160 kb on + strand at 934.160 kb on + strand at 934.160 kb on + strand at 934.160 kb on + strand at 934.160 kb on + strand at 934.161 kb on - strand at 934.161 kb on - strand at 934.161 kb on - strand at 934.161 kb on - strand at 934.168 kb on + strand at 934.168 kb on + strand at 934.168 kb on + strand at 934.168 kb on + strand at 934.168 kb on + strand at 934.168 kb on + strand at 934.168 kb on + strand at 934.169 kb on - strand at 934.169 kb on - strand at 934.169 kb on - strand at 934.169 kb on - strand at 934.169 kb on - strand at 934.169 kb on - strand at 934.202 kb on + strand at 934.202 kb on + strand at 934.202 kb on + strand at 934.203 kb on - strand at 934.207 kb on + strand at 934.207 kb on + strand at 934.208 kb on - strand at 934.208 kb on - strand at 934.270 kb on + strand at 934.271 kb on - strand at 934.271 kb on - strand at 934.271 kb on - strand at 934.302 kb on + strand at 934.302 kb on + strand at 934.302 kb on + strand at 934.302 kb on + strand at 934.302 kb on + strand at 934.303 kb on - strand at 934.303 kb on - strand at 934.303 kb on - strand at 934.373 kb on + strand at 934.373 kb on + strand at 934.373 kb on + strand at 934.373 kb on + strand at 934.373 kb on + strand at 934.374 kb on - strand at 934.374 kb on - strand at 934.374 kb on - strand at 934.374 kb on - strand at 934.374 kb on - strand at 934.374 kb on - strand at 934.374 kb on - strand at 934.481 kb on + strand, within QEN71_RS04235 at 934.481 kb on + strand, within QEN71_RS04235 at 934.481 kb on + strand, within QEN71_RS04235 at 934.481 kb on + strand, within QEN71_RS04235 at 934.481 kb on + strand, within QEN71_RS04235 at 934.482 kb on - strand, within QEN71_RS04235 at 934.482 kb on - strand, within QEN71_RS04235 at 934.482 kb on - strand, within QEN71_RS04235 at 934.482 kb on - strand, within QEN71_RS04235 at 934.493 kb on + strand, within QEN71_RS04235 at 934.493 kb on + strand, within QEN71_RS04235 at 934.541 kb on + strand, within QEN71_RS04235 at 934.541 kb on + strand, within QEN71_RS04235 at 934.541 kb on + strand, within QEN71_RS04235 at 934.541 kb on + strand, within QEN71_RS04235 at 934.542 kb on - strand, within QEN71_RS04235 at 934.542 kb on - strand, within QEN71_RS04235 at 934.574 kb on + strand, within QEN71_RS04235 at 934.574 kb on + strand, within QEN71_RS04235 at 934.787 kb on + strand, within QEN71_RS04235 at 934.787 kb on + strand, within QEN71_RS04235 at 934.788 kb on - strand, within QEN71_RS04235 at 934.802 kb on + strand, within QEN71_RS04235 at 934.802 kb on + strand, within QEN71_RS04235 at 934.802 kb on + strand, within QEN71_RS04235 at 934.803 kb on - strand, within QEN71_RS04235 at 934.803 kb on - strand, within QEN71_RS04235 at 934.905 kb on + strand, within QEN71_RS04235 at 934.905 kb on + strand, within QEN71_RS04235 at 934.906 kb on - strand, within QEN71_RS04235 at 934.952 kb on + strand, within QEN71_RS04235 at 934.952 kb on + strand, within QEN71_RS04235 at 934.952 kb on + strand, within QEN71_RS04235 at 934.952 kb on + strand, within QEN71_RS04235 at 934.953 kb on - strand, within QEN71_RS04235 at 934.953 kb on - strand, within QEN71_RS04235 at 934.953 kb on - strand, within QEN71_RS04235 at 935.476 kb on - strand, within QEN71_RS04240
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 933,319 + -0.2 933,319 + +1.9 933,319 + -0.9 933,376 + -0.5 933,376 + -0.8 933,376 + +0.1 933,376 + +0.3 933,376 + +0.7 933,376 + -0.6 933,376 + +0.9 933,376 + +0.6 933,376 + +0.9 933,377 - -0.3 933,377 - -0.2 933,377 - +0.5 933,377 - -1.6 933,377 - -0.5 933,377 - -1.6 933,377 - +0.3 933,382 + +0.8 933,382 + +0.1 933,382 + -0.5 933,382 + -0.6 933,382 + -0.3 933,382 + -0.3 933,382 + -0.3 933,382 + -0.1 933,382 + +0.8 933,382 + -0.4 933,382 + +0.8 933,382 + -0.5 933,382 + -0.8 933,382 + -0.4 933,382 + +0.1 933,382 + -0.5 933,382 + -0.0 933,383 - +1.2 933,383 - -0.7 933,383 - +0.3 933,383 - +0.3 933,383 - +0.6 933,383 - -0.3 933,383 - -0.5 933,383 - -0.6 933,383 - +0.7 933,383 - -0.5 933,383 - +0.6 933,383 - -0.7 933,383 - +0.3 933,383 - -1.4 933,611 + QEN71_RS04230 0.28 +0.8 933,612 - QEN71_RS04230 0.28 +0.2 933,785 + QEN71_RS04230 0.52 -0.4 933,785 + QEN71_RS04230 0.52 -0.5 933,785 + QEN71_RS04230 0.52 -0.0 933,785 + QEN71_RS04230 0.52 +0.3 933,786 - QEN71_RS04230 0.52 -0.2 933,786 - QEN71_RS04230 0.52 -0.2 933,832 + QEN71_RS04230 0.59 -1.3 934,060 + +0.2 934,060 + +0.3 934,060 + +0.2 934,060 + -0.7 934,060 + -0.9 934,102 + -0.0 934,125 + -0.3 934,125 + -1.0 934,125 + -0.2 934,126 - -0.9 934,126 - +0.4 934,126 - -0.7 934,126 - -1.7 934,139 + +1.6 934,139 + -1.5 934,140 - -0.4 934,140 - -1.1 934,160 + -0.6 934,160 + +0.2 934,160 + -0.2 934,160 + -0.4 934,160 + +0.4 934,160 + -0.7 934,160 + -0.1 934,160 + +1.5 934,160 + -1.2 934,161 - +0.9 934,161 - -1.2 934,161 - -0.3 934,161 - +0.1 934,168 + +0.2 934,168 + -1.9 934,168 + +0.1 934,168 + +0.8 934,168 + +1.7 934,168 + -0.3 934,168 + +0.9 934,169 - -1.2 934,169 - -1.4 934,169 - -2.0 934,169 - -0.7 934,169 - -0.2 934,169 - +1.5 934,202 + -0.2 934,202 + -0.5 934,202 + -0.0 934,203 - -1.2 934,207 + -1.7 934,207 + +0.6 934,208 - +0.8 934,208 - -2.1 934,270 + +0.5 934,271 - +0.1 934,271 - +1.1 934,271 - -2.1 934,302 + -1.0 934,302 + -0.2 934,302 + -2.5 934,302 + -0.5 934,302 + -1.8 934,303 - -0.3 934,303 - -0.1 934,303 - -1.2 934,373 + -0.1 934,373 + -1.1 934,373 + -0.2 934,373 + +0.1 934,373 + -1.4 934,374 - -1.1 934,374 - -2.4 934,374 - -2.1 934,374 - -1.4 934,374 - -2.0 934,374 - -1.2 934,374 - +0.1 934,481 + QEN71_RS04235 0.21 -0.4 934,481 + QEN71_RS04235 0.21 -0.2 934,481 + QEN71_RS04235 0.21 -1.1 934,481 + QEN71_RS04235 0.21 -1.5 934,481 + QEN71_RS04235 0.21 +0.2 934,482 - QEN71_RS04235 0.21 -0.7 934,482 - QEN71_RS04235 0.21 -1.4 934,482 - QEN71_RS04235 0.21 +0.1 934,482 - QEN71_RS04235 0.21 +1.1 934,493 + QEN71_RS04235 0.22 -0.5 934,493 + QEN71_RS04235 0.22 -1.4 934,541 + QEN71_RS04235 0.27 -0.8 934,541 + QEN71_RS04235 0.27 +0.3 934,541 + QEN71_RS04235 0.27 -2.4 934,541 + QEN71_RS04235 0.27 -1.7 934,542 - QEN71_RS04235 0.27 -1.2 934,542 - QEN71_RS04235 0.27 +0.1 934,574 + QEN71_RS04235 0.31 -0.2 934,574 + QEN71_RS04235 0.31 -1.2 934,787 + QEN71_RS04235 0.53 -0.9 934,787 + QEN71_RS04235 0.53 -1.1 934,788 - QEN71_RS04235 0.53 -2.0 934,802 + QEN71_RS04235 0.55 +0.1 934,802 + QEN71_RS04235 0.55 -0.7 934,802 + QEN71_RS04235 0.55 -0.5 934,803 - QEN71_RS04235 0.55 -2.0 934,803 - QEN71_RS04235 0.55 -1.2 934,905 + QEN71_RS04235 0.66 -2.3 934,905 + QEN71_RS04235 0.66 +0.1 934,906 - QEN71_RS04235 0.66 -1.9 934,952 + QEN71_RS04235 0.71 -0.7 934,952 + QEN71_RS04235 0.71 -0.5 934,952 + QEN71_RS04235 0.71 -0.9 934,952 + QEN71_RS04235 0.71 +0.5 934,953 - QEN71_RS04235 0.71 +0.6 934,953 - QEN71_RS04235 0.71 +0.5 934,953 - QEN71_RS04235 0.71 -0.8 935,476 - QEN71_RS04240 0.71 -2.1
Or see this region's nucleotide sequence