Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04085

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04080 and QEN71_RS04085 are separated by 17 nucleotidesQEN71_RS04085 and QEN71_RS04090 are separated by 48 nucleotidesQEN71_RS04090 and QEN71_RS04095 are separated by 151 nucleotides QEN71_RS04080: QEN71_RS04080 - prephenate dehydrogenase/arogenate dehydrogenase family protein, at 903,747 to 904,709 _RS04080 QEN71_RS04085: QEN71_RS04085 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 904,727 to 906,031 _RS04085 QEN71_RS04090: QEN71_RS04090 - (d)CMP kinase, at 906,080 to 906,766 _RS04090 QEN71_RS04095: QEN71_RS04095 - 30S ribosomal protein S1, at 906,918 to 908,648 _RS04095 Position (kb) 904 905 906 907Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 903.847 kb on + strand, within QEN71_RS04080at 903.847 kb on + strand, within QEN71_RS04080at 903.847 kb on + strand, within QEN71_RS04080at 903.847 kb on + strand, within QEN71_RS04080at 903.847 kb on + strand, within QEN71_RS04080at 904.206 kb on + strand, within QEN71_RS04080at 904.206 kb on + strand, within QEN71_RS04080at 904.206 kb on + strand, within QEN71_RS04080at 904.206 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.540 kb on + strand, within QEN71_RS04080at 904.606 kb on + strand, within QEN71_RS04080at 904.606 kb on + strand, within QEN71_RS04080at 904.707 kb on + strandat 904.707 kb on + strandat 904.707 kb on + strandat 904.812 kb on + strandat 904.812 kb on + strandat 904.812 kb on + strandat 905.077 kb on + strand, within QEN71_RS04085at 905.077 kb on + strand, within QEN71_RS04085at 905.077 kb on + strand, within QEN71_RS04085at 905.077 kb on + strand, within QEN71_RS04085at 905.077 kb on + strand, within QEN71_RS04085at 905.173 kb on + strand, within QEN71_RS04085at 905.173 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.423 kb on + strand, within QEN71_RS04085at 905.474 kb on + strand, within QEN71_RS04085at 905.474 kb on + strand, within QEN71_RS04085at 905.474 kb on + strand, within QEN71_RS04085at 905.474 kb on + strand, within QEN71_RS04085at 905.734 kb on + strand, within QEN71_RS04085at 905.734 kb on + strand, within QEN71_RS04085at 905.894 kb on + strand, within QEN71_RS04085at 905.894 kb on + strand, within QEN71_RS04085at 905.894 kb on + strand, within QEN71_RS04085at 905.894 kb on + strand, within QEN71_RS04085at 905.894 kb on + strand, within QEN71_RS04085at 905.894 kb on + strand, within QEN71_RS04085at 906.044 kb on + strandat 906.044 kb on + strandat 906.044 kb on + strandat 906.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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903,847 + QEN71_RS04080 0.10 -2.1
903,847 + QEN71_RS04080 0.10 -2.9
903,847 + QEN71_RS04080 0.10 -2.8
903,847 + QEN71_RS04080 0.10 -0.9
903,847 + QEN71_RS04080 0.10 -0.8
904,206 + QEN71_RS04080 0.48 -1.5
904,206 + QEN71_RS04080 0.48 -2.7
904,206 + QEN71_RS04080 0.48 -0.7
904,206 + QEN71_RS04080 0.48 -0.5
904,268 + QEN71_RS04080 0.54 -1.4
904,268 + QEN71_RS04080 0.54 -1.9
904,268 + QEN71_RS04080 0.54 -0.2
904,268 + QEN71_RS04080 0.54 -1.8
904,268 + QEN71_RS04080 0.54 -2.7
904,268 + QEN71_RS04080 0.54 -0.7
904,268 + QEN71_RS04080 0.54 -0.5
904,539 + QEN71_RS04080 0.82 -0.1
904,539 + QEN71_RS04080 0.82 -1.3
904,539 + QEN71_RS04080 0.82 -0.2
904,539 + QEN71_RS04080 0.82 -1.1
904,539 + QEN71_RS04080 0.82 -2.0
904,539 + QEN71_RS04080 0.82 -0.1
904,540 + QEN71_RS04080 0.82 -0.7
904,606 + QEN71_RS04080 0.89 +1.3
904,606 + QEN71_RS04080 0.89 -3.4
904,707 + -0.0
904,707 + +0.6
904,707 + +0.5
904,812 + -2.8
904,812 + -3.9
904,812 + -2.9
905,077 + QEN71_RS04085 0.27 -2.3
905,077 + QEN71_RS04085 0.27 -4.2
905,077 + QEN71_RS04085 0.27 -2.1
905,077 + QEN71_RS04085 0.27 -0.0
905,077 + QEN71_RS04085 0.27 -1.6
905,173 + QEN71_RS04085 0.34 -2.9
905,173 + QEN71_RS04085 0.34 -1.2
905,330 + QEN71_RS04085 0.46 -0.9
905,330 + QEN71_RS04085 0.46 -1.6
905,330 + QEN71_RS04085 0.46 +0.2
905,330 + QEN71_RS04085 0.46 -2.6
905,330 + QEN71_RS04085 0.46 -2.6
905,330 + QEN71_RS04085 0.46 -2.0
905,330 + QEN71_RS04085 0.46 -4.1
905,423 + QEN71_RS04085 0.53 +0.1
905,474 + QEN71_RS04085 0.57 -2.5
905,474 + QEN71_RS04085 0.57 -3.8
905,474 + QEN71_RS04085 0.57 -2.9
905,474 + QEN71_RS04085 0.57 -2.0
905,734 + QEN71_RS04085 0.77 -4.4
905,734 + QEN71_RS04085 0.77 -1.2
905,894 + QEN71_RS04085 0.89 -1.4
905,894 + QEN71_RS04085 0.89 +0.1
905,894 + QEN71_RS04085 0.89 -5.6
905,894 + QEN71_RS04085 0.89 -0.5
905,894 + QEN71_RS04085 0.89 -3.0
905,894 + QEN71_RS04085 0.89 -0.2
906,044 + -0.7
906,044 + -0.1
906,044 + -0.1
906,044 + +1.0

Or see this region's nucleotide sequence