Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04080

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04075 and QEN71_RS04080 are separated by 51 nucleotidesQEN71_RS04080 and QEN71_RS04085 are separated by 17 nucleotides QEN71_RS04075: QEN71_RS04075 - histidinol-phosphate transaminase, at 902,580 to 903,695 _RS04075 QEN71_RS04080: QEN71_RS04080 - prephenate dehydrogenase/arogenate dehydrogenase family protein, at 903,747 to 904,709 _RS04080 QEN71_RS04085: QEN71_RS04085 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 904,727 to 906,031 _RS04085 Position (kb) 903 904 905Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 902.823 kb on + strand, within QEN71_RS04075at 902.823 kb on + strand, within QEN71_RS04075at 902.823 kb on + strand, within QEN71_RS04075at 902.823 kb on + strand, within QEN71_RS04075at 902.823 kb on + strand, within QEN71_RS04075at 902.823 kb on + strand, within QEN71_RS04075at 902.931 kb on + strand, within QEN71_RS04075at 902.931 kb on + strand, within QEN71_RS04075at 902.931 kb on + strand, within QEN71_RS04075at 902.946 kb on + strand, within QEN71_RS04075at 902.946 kb on + strand, within QEN71_RS04075at 902.946 kb on + strand, within QEN71_RS04075at 902.946 kb on + strand, within QEN71_RS04075at 902.946 kb on + strand, within QEN71_RS04075at 903.003 kb on + strand, within QEN71_RS04075at 903.003 kb on + strand, within QEN71_RS04075at 903.168 kb on + strand, within QEN71_RS04075at 903.168 kb on + strand, within QEN71_RS04075at 903.177 kb on + strand, within QEN71_RS04075at 903.177 kb on + strand, within QEN71_RS04075at 903.177 kb on + strand, within QEN71_RS04075at 903.438 kb on + strand, within QEN71_RS04075at 903.480 kb on + strand, within QEN71_RS04075at 903.480 kb on + strand, within QEN71_RS04075at 903.480 kb on + strand, within QEN71_RS04075at 903.480 kb on + strand, within QEN71_RS04075at 903.480 kb on + strand, within QEN71_RS04075at 903.480 kb on + strand, within QEN71_RS04075at 903.593 kb on + strandat 903.593 kb on + strandat 903.593 kb on + strandat 903.593 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.597 kb on + strandat 903.699 kb on + strandat 903.699 kb on + strandat 903.699 kb on + strandat 903.699 kb on + strandat 903.699 kb on + strandat 903.699 kb on + strandat 903.699 kb on + strandat 903.847 kb on + strand, within QEN71_RS04080at 903.847 kb on + strand, within QEN71_RS04080at 903.847 kb on + strand, within QEN71_RS04080at 903.847 kb on + strand, within QEN71_RS04080at 903.847 kb on + strand, within QEN71_RS04080at 904.206 kb on + strand, within QEN71_RS04080at 904.206 kb on + strand, within QEN71_RS04080at 904.206 kb on + strand, within QEN71_RS04080at 904.206 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.268 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.539 kb on + strand, within QEN71_RS04080at 904.540 kb on + strand, within QEN71_RS04080at 904.606 kb on + strand, within QEN71_RS04080at 904.606 kb on + strand, within QEN71_RS04080at 904.707 kb on + strandat 904.707 kb on + strandat 904.707 kb on + strandat 904.812 kb on + strandat 904.812 kb on + strandat 904.812 kb on + strandat 905.077 kb on + strand, within QEN71_RS04085at 905.077 kb on + strand, within QEN71_RS04085at 905.077 kb on + strand, within QEN71_RS04085at 905.077 kb on + strand, within QEN71_RS04085at 905.077 kb on + strand, within QEN71_RS04085at 905.173 kb on + strand, within QEN71_RS04085at 905.173 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.330 kb on + strand, within QEN71_RS04085at 905.423 kb on + strand, within QEN71_RS04085at 905.474 kb on + strand, within QEN71_RS04085at 905.474 kb on + strand, within QEN71_RS04085at 905.474 kb on + strand, within QEN71_RS04085at 905.474 kb on + strand, within QEN71_RS04085

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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902,823 + QEN71_RS04075 0.22 -0.2
902,823 + QEN71_RS04075 0.22 +0.5
902,823 + QEN71_RS04075 0.22 -1.7
902,823 + QEN71_RS04075 0.22 -0.7
902,823 + QEN71_RS04075 0.22 +0.5
902,823 + QEN71_RS04075 0.22 -0.7
902,931 + QEN71_RS04075 0.31 -0.4
902,931 + QEN71_RS04075 0.31 +0.4
902,931 + QEN71_RS04075 0.31 -0.7
902,946 + QEN71_RS04075 0.33 +1.8
902,946 + QEN71_RS04075 0.33 +0.1
902,946 + QEN71_RS04075 0.33 +0.1
902,946 + QEN71_RS04075 0.33 +0.0
902,946 + QEN71_RS04075 0.33 +0.7
903,003 + QEN71_RS04075 0.38 +0.1
903,003 + QEN71_RS04075 0.38 -1.3
903,168 + QEN71_RS04075 0.53 +0.7
903,168 + QEN71_RS04075 0.53 +0.5
903,177 + QEN71_RS04075 0.53 +1.5
903,177 + QEN71_RS04075 0.53 +1.1
903,177 + QEN71_RS04075 0.53 -0.5
903,438 + QEN71_RS04075 0.77 +0.3
903,480 + QEN71_RS04075 0.81 -1.5
903,480 + QEN71_RS04075 0.81 -0.7
903,480 + QEN71_RS04075 0.81 +1.3
903,480 + QEN71_RS04075 0.81 +0.9
903,480 + QEN71_RS04075 0.81 +2.1
903,480 + QEN71_RS04075 0.81 +0.0
903,593 + +0.1
903,593 + +1.1
903,593 + -1.6
903,593 + +1.1
903,597 + +0.9
903,597 + -0.7
903,597 + +0.4
903,597 + +0.8
903,597 + -1.6
903,597 + +0.9
903,597 + -0.3
903,597 + -2.3
903,597 + -0.4
903,597 + +0.7
903,597 + +0.1
903,597 + -0.9
903,597 + -0.4
903,597 + -1.5
903,597 + +0.5
903,597 + +0.4
903,597 + +0.1
903,597 + -1.4
903,597 + -0.3
903,597 + +0.3
903,597 + -2.2
903,597 + -0.5
903,597 + +1.4
903,597 + +0.9
903,597 + +0.3
903,597 + -0.4
903,597 + +0.9
903,699 + -0.4
903,699 + +0.3
903,699 + -0.5
903,699 + -0.4
903,699 + +0.1
903,699 + +0.3
903,699 + -0.4
903,847 + QEN71_RS04080 0.10 -2.1
903,847 + QEN71_RS04080 0.10 -2.9
903,847 + QEN71_RS04080 0.10 -2.8
903,847 + QEN71_RS04080 0.10 -0.9
903,847 + QEN71_RS04080 0.10 -0.8
904,206 + QEN71_RS04080 0.48 -1.5
904,206 + QEN71_RS04080 0.48 -2.7
904,206 + QEN71_RS04080 0.48 -0.7
904,206 + QEN71_RS04080 0.48 -0.5
904,268 + QEN71_RS04080 0.54 -1.4
904,268 + QEN71_RS04080 0.54 -1.9
904,268 + QEN71_RS04080 0.54 -0.2
904,268 + QEN71_RS04080 0.54 -1.8
904,268 + QEN71_RS04080 0.54 -2.7
904,268 + QEN71_RS04080 0.54 -0.7
904,268 + QEN71_RS04080 0.54 -0.5
904,539 + QEN71_RS04080 0.82 -0.1
904,539 + QEN71_RS04080 0.82 -1.3
904,539 + QEN71_RS04080 0.82 -0.2
904,539 + QEN71_RS04080 0.82 -1.1
904,539 + QEN71_RS04080 0.82 -2.0
904,539 + QEN71_RS04080 0.82 -0.1
904,540 + QEN71_RS04080 0.82 -0.7
904,606 + QEN71_RS04080 0.89 +1.3
904,606 + QEN71_RS04080 0.89 -3.4
904,707 + -0.0
904,707 + +0.6
904,707 + +0.5
904,812 + -2.8
904,812 + -3.9
904,812 + -2.9
905,077 + QEN71_RS04085 0.27 -2.3
905,077 + QEN71_RS04085 0.27 -4.2
905,077 + QEN71_RS04085 0.27 -2.1
905,077 + QEN71_RS04085 0.27 -0.0
905,077 + QEN71_RS04085 0.27 -1.6
905,173 + QEN71_RS04085 0.34 -2.9
905,173 + QEN71_RS04085 0.34 -1.2
905,330 + QEN71_RS04085 0.46 -0.9
905,330 + QEN71_RS04085 0.46 -1.6
905,330 + QEN71_RS04085 0.46 +0.2
905,330 + QEN71_RS04085 0.46 -2.6
905,330 + QEN71_RS04085 0.46 -2.6
905,330 + QEN71_RS04085 0.46 -2.0
905,330 + QEN71_RS04085 0.46 -4.1
905,423 + QEN71_RS04085 0.53 +0.1
905,474 + QEN71_RS04085 0.57 -2.5
905,474 + QEN71_RS04085 0.57 -3.8
905,474 + QEN71_RS04085 0.57 -2.9
905,474 + QEN71_RS04085 0.57 -2.0

Or see this region's nucleotide sequence