Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04065

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04055 and QEN71_RS04060 are separated by 117 nucleotidesQEN71_RS04060 and QEN71_RS04065 are separated by 213 nucleotidesQEN71_RS04065 and QEN71_RS04070 are separated by 69 nucleotides QEN71_RS04055: QEN71_RS04055 - DNA gyrase subunit A, at 896,705 to 899,332 _RS04055 QEN71_RS04060: QEN71_RS04060 - DUF2059 domain-containing protein, at 899,450 to 900,058 _RS04060 QEN71_RS04065: QEN71_RS04065 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 900,272 to 901,354 _RS04065 QEN71_RS04070: QEN71_RS04070 - prephenate dehydratase, at 901,424 to 902,506 _RS04070 Position (kb) 900 901 902Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 899.330 kb on + strandat 899.330 kb on + strandat 899.354 kb on + strandat 899.354 kb on + strandat 899.354 kb on + strandat 899.354 kb on + strandat 899.354 kb on + strandat 899.361 kb on + strandat 899.361 kb on + strandat 899.428 kb on + strandat 899.428 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.056 kb on + strandat 900.057 kb on - strandat 900.057 kb on - strandat 900.057 kb on - strandat 900.057 kb on - strandat 900.057 kb on - strandat 900.057 kb on - strandat 900.057 kb on - strandat 900.057 kb on - strandat 900.057 kb on - strandat 900.057 kb on - strandat 900.605 kb on + strand, within QEN71_RS04065at 900.605 kb on + strand, within QEN71_RS04065at 900.605 kb on + strand, within QEN71_RS04065at 900.605 kb on + strand, within QEN71_RS04065at 900.701 kb on + strand, within QEN71_RS04065at 900.701 kb on + strand, within QEN71_RS04065at 900.701 kb on + strand, within QEN71_RS04065at 900.769 kb on + strand, within QEN71_RS04065at 900.769 kb on + strand, within QEN71_RS04065at 900.769 kb on + strand, within QEN71_RS04065at 900.769 kb on + strand, within QEN71_RS04065at 900.830 kb on + strand, within QEN71_RS04065at 900.830 kb on + strand, within QEN71_RS04065at 900.830 kb on + strand, within QEN71_RS04065at 900.830 kb on + strand, within QEN71_RS04065at 900.862 kb on + strand, within QEN71_RS04065at 900.977 kb on + strand, within QEN71_RS04065at 900.977 kb on + strand, within QEN71_RS04065at 900.977 kb on + strand, within QEN71_RS04065at 900.977 kb on + strand, within QEN71_RS04065at 900.977 kb on + strand, within QEN71_RS04065at 900.977 kb on + strand, within QEN71_RS04065at 900.977 kb on + strand, within QEN71_RS04065at 900.977 kb on + strand, within QEN71_RS04065at 900.995 kb on + strand, within QEN71_RS04065at 900.995 kb on + strand, within QEN71_RS04065at 900.995 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.004 kb on + strand, within QEN71_RS04065at 901.094 kb on + strand, within QEN71_RS04065at 901.094 kb on + strand, within QEN71_RS04065at 901.094 kb on + strand, within QEN71_RS04065at 901.094 kb on + strand, within QEN71_RS04065at 901.094 kb on + strand, within QEN71_RS04065at 901.164 kb on + strand, within QEN71_RS04065at 901.164 kb on + strand, within QEN71_RS04065at 901.164 kb on + strand, within QEN71_RS04065at 901.164 kb on + strand, within QEN71_RS04065at 901.322 kb on + strandat 901.322 kb on + strandat 901.322 kb on + strandat 901.322 kb on + strandat 901.322 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.709 kb on + strand, within QEN71_RS04070at 901.730 kb on + strand, within QEN71_RS04070at 901.730 kb on + strand, within QEN71_RS04070at 901.730 kb on + strand, within QEN71_RS04070at 901.730 kb on + strand, within QEN71_RS04070at 901.730 kb on + strand, within QEN71_RS04070at 901.754 kb on + strand, within QEN71_RS04070at 902.249 kb on + strand, within QEN71_RS04070

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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899,330 + +0.1
899,330 + -0.1
899,354 + +2.3
899,354 + -1.7
899,354 + -0.7
899,354 + -0.5
899,354 + -0.8
899,361 + +0.3
899,361 + -0.9
899,428 + -1.3
899,428 + -1.8
900,056 + -0.7
900,056 + +0.5
900,056 + -0.1
900,056 + +0.6
900,056 + -0.1
900,056 + -0.5
900,056 + -1.3
900,056 + -2.2
900,056 + +2.2
900,056 + -1.2
900,056 + -0.1
900,057 - +0.7
900,057 - +0.6
900,057 - +1.9
900,057 - -0.6
900,057 - +0.2
900,057 - +0.0
900,057 - +0.8
900,057 - -0.1
900,057 - +0.4
900,057 - -0.7
900,605 + QEN71_RS04065 0.31 -3.4
900,605 + QEN71_RS04065 0.31 -2.1
900,605 + QEN71_RS04065 0.31 -1.6
900,605 + QEN71_RS04065 0.31 -3.1
900,701 + QEN71_RS04065 0.40 -0.9
900,701 + QEN71_RS04065 0.40 -2.2
900,701 + QEN71_RS04065 0.40 -3.7
900,769 + QEN71_RS04065 0.46 -4.2
900,769 + QEN71_RS04065 0.46 -2.4
900,769 + QEN71_RS04065 0.46 -2.7
900,769 + QEN71_RS04065 0.46 -3.6
900,830 + QEN71_RS04065 0.52 -5.5
900,830 + QEN71_RS04065 0.52 -4.0
900,830 + QEN71_RS04065 0.52 -2.1
900,830 + QEN71_RS04065 0.52 -3.8
900,862 + QEN71_RS04065 0.54 -2.8
900,977 + QEN71_RS04065 0.65 -3.0
900,977 + QEN71_RS04065 0.65 -4.5
900,977 + QEN71_RS04065 0.65 -1.5
900,977 + QEN71_RS04065 0.65 -0.5
900,977 + QEN71_RS04065 0.65 -3.8
900,977 + QEN71_RS04065 0.65 -4.0
900,977 + QEN71_RS04065 0.65 -2.6
900,977 + QEN71_RS04065 0.65 -4.7
900,995 + QEN71_RS04065 0.67 -3.0
900,995 + QEN71_RS04065 0.67 -3.1
900,995 + QEN71_RS04065 0.67 -3.2
901,004 + QEN71_RS04065 0.68 -3.1
901,004 + QEN71_RS04065 0.68 -1.9
901,004 + QEN71_RS04065 0.68 -1.1
901,004 + QEN71_RS04065 0.68 -3.9
901,004 + QEN71_RS04065 0.68 +0.1
901,004 + QEN71_RS04065 0.68 -4.4
901,004 + QEN71_RS04065 0.68 -0.9
901,004 + QEN71_RS04065 0.68 -2.7
901,004 + QEN71_RS04065 0.68 -2.6
901,004 + QEN71_RS04065 0.68 -5.5
901,004 + QEN71_RS04065 0.68 -1.7
901,004 + QEN71_RS04065 0.68 -1.5
901,094 + QEN71_RS04065 0.76 -4.2
901,094 + QEN71_RS04065 0.76 -2.6
901,094 + QEN71_RS04065 0.76 -1.5
901,094 + QEN71_RS04065 0.76 -0.7
901,094 + QEN71_RS04065 0.76 -4.1
901,164 + QEN71_RS04065 0.82 -3.0
901,164 + QEN71_RS04065 0.82 -3.3
901,164 + QEN71_RS04065 0.82 -0.5
901,164 + QEN71_RS04065 0.82 -4.0
901,322 + -4.4
901,322 + -2.5
901,322 + -3.2
901,322 + -0.5
901,322 + -2.6
901,417 + +1.4
901,417 + +0.3
901,417 + -0.7
901,417 + +0.4
901,417 + -0.9
901,709 + QEN71_RS04070 0.26 -0.7
901,730 + QEN71_RS04070 0.28 -2.5
901,730 + QEN71_RS04070 0.28 -1.4
901,730 + QEN71_RS04070 0.28 -3.9
901,730 + QEN71_RS04070 0.28 -2.3
901,730 + QEN71_RS04070 0.28 -1.1
901,754 + QEN71_RS04070 0.30 -2.6
902,249 + QEN71_RS04070 0.76 -4.3

Or see this region's nucleotide sequence