Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03400

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03395 and QEN71_RS03400 are separated by 162 nucleotidesQEN71_RS03400 and QEN71_RS03405 are separated by 247 nucleotides QEN71_RS03395: QEN71_RS03395 - LysR family transcriptional regulator, at 755,530 to 756,444 _RS03395 QEN71_RS03400: QEN71_RS03400 - agmatinase, at 756,607 to 757,599 _RS03400 QEN71_RS03405: QEN71_RS03405 - tetratricopeptide repeat-containing glycosyltransferase family protein, at 757,847 to 759,478 _RS03405 Position (kb) 756 757 758Strain fitness (log2 ratio) -2 -1 0 1 2at 755.624 kb on + strand, within QEN71_RS03395at 755.625 kb on + strand, within QEN71_RS03395at 755.625 kb on + strand, within QEN71_RS03395at 755.626 kb on - strand, within QEN71_RS03395at 755.626 kb on - strand, within QEN71_RS03395at 755.626 kb on - strand, within QEN71_RS03395at 755.626 kb on - strand, within QEN71_RS03395at 755.626 kb on - strand, within QEN71_RS03395at 755.690 kb on + strand, within QEN71_RS03395at 755.690 kb on + strand, within QEN71_RS03395at 755.690 kb on + strand, within QEN71_RS03395at 755.690 kb on + strand, within QEN71_RS03395at 755.691 kb on - strand, within QEN71_RS03395at 755.691 kb on - strand, within QEN71_RS03395at 755.718 kb on - strand, within QEN71_RS03395at 755.826 kb on - strand, within QEN71_RS03395at 755.826 kb on - strand, within QEN71_RS03395at 755.912 kb on + strand, within QEN71_RS03395at 755.945 kb on + strand, within QEN71_RS03395at 755.945 kb on + strand, within QEN71_RS03395at 755.946 kb on - strand, within QEN71_RS03395at 755.946 kb on - strand, within QEN71_RS03395at 755.946 kb on - strand, within QEN71_RS03395at 755.975 kb on + strand, within QEN71_RS03395at 755.975 kb on + strand, within QEN71_RS03395at 756.100 kb on - strand, within QEN71_RS03395at 756.123 kb on + strand, within QEN71_RS03395at 756.124 kb on - strand, within QEN71_RS03395at 756.124 kb on - strand, within QEN71_RS03395at 756.124 kb on - strand, within QEN71_RS03395at 756.344 kb on - strand, within QEN71_RS03395at 756.354 kb on + strandat 756.355 kb on - strandat 756.355 kb on - strandat 756.445 kb on - strandat 756.497 kb on + strandat 756.497 kb on + strandat 756.497 kb on + strandat 756.498 kb on - strandat 756.498 kb on - strandat 756.498 kb on - strandat 756.498 kb on - strandat 756.498 kb on - strandat 756.612 kb on + strandat 756.613 kb on - strandat 756.613 kb on - strandat 756.613 kb on - strandat 756.847 kb on + strand, within QEN71_RS03400at 756.847 kb on + strand, within QEN71_RS03400at 756.847 kb on + strand, within QEN71_RS03400at 756.847 kb on + strand, within QEN71_RS03400at 756.847 kb on + strand, within QEN71_RS03400at 756.847 kb on + strand, within QEN71_RS03400at 756.847 kb on + strand, within QEN71_RS03400at 756.848 kb on - strand, within QEN71_RS03400at 756.848 kb on - strand, within QEN71_RS03400at 756.922 kb on + strand, within QEN71_RS03400at 756.922 kb on + strand, within QEN71_RS03400at 756.922 kb on + strand, within QEN71_RS03400at 756.922 kb on + strand, within QEN71_RS03400at 756.922 kb on + strand, within QEN71_RS03400at 756.922 kb on + strand, within QEN71_RS03400at 756.923 kb on - strand, within QEN71_RS03400at 756.923 kb on - strand, within QEN71_RS03400at 756.923 kb on - strand, within QEN71_RS03400at 756.923 kb on - strand, within QEN71_RS03400at 756.923 kb on - strand, within QEN71_RS03400at 756.925 kb on - strand, within QEN71_RS03400at 756.925 kb on - strand, within QEN71_RS03400at 756.961 kb on + strand, within QEN71_RS03400at 756.961 kb on + strand, within QEN71_RS03400at 756.961 kb on + strand, within QEN71_RS03400at 757.054 kb on + strand, within QEN71_RS03400at 757.054 kb on + strand, within QEN71_RS03400at 757.054 kb on + strand, within QEN71_RS03400at 757.055 kb on - strand, within QEN71_RS03400at 757.213 kb on + strand, within QEN71_RS03400at 757.213 kb on + strand, within QEN71_RS03400at 757.214 kb on - strand, within QEN71_RS03400at 757.342 kb on + strand, within QEN71_RS03400at 757.342 kb on + strand, within QEN71_RS03400at 757.343 kb on - strand, within QEN71_RS03400at 757.343 kb on - strand, within QEN71_RS03400at 757.343 kb on - strand, within QEN71_RS03400at 757.343 kb on - strand, within QEN71_RS03400at 757.464 kb on + strand, within QEN71_RS03400at 757.464 kb on + strand, within QEN71_RS03400at 757.501 kb on + strandat 757.501 kb on + strandat 757.597 kb on + strandat 757.597 kb on + strandat 757.598 kb on - strandat 757.643 kb on + strandat 757.644 kb on - strandat 757.644 kb on - strandat 757.644 kb on - strandat 757.653 kb on + strandat 757.701 kb on + strandat 757.718 kb on - strandat 757.718 kb on - strandat 757.748 kb on + strandat 757.792 kb on + strandat 757.792 kb on + strandat 757.821 kb on + strandat 757.821 kb on + strandat 757.821 kb on + strandat 757.821 kb on + strandat 757.821 kb on + strandat 757.821 kb on + strandat 757.822 kb on - strandat 757.822 kb on - strandat 757.822 kb on - strandat 757.822 kb on - strandat 757.822 kb on - strandat 757.822 kb on - strandat 757.822 kb on - strandat 757.822 kb on - strandat 757.824 kb on + strandat 757.824 kb on + strandat 757.824 kb on + strandat 757.824 kb on + strandat 757.824 kb on + strandat 757.824 kb on + strandat 757.824 kb on + strandat 757.825 kb on - strandat 757.825 kb on - strandat 757.825 kb on - strandat 757.825 kb on - strandat 757.825 kb on - strandat 757.825 kb on - strandat 757.850 kb on + strandat 757.850 kb on + strandat 757.851 kb on - strandat 757.851 kb on - strandat 757.889 kb on + strandat 757.890 kb on - strandat 757.910 kb on + strandat 757.910 kb on + strandat 757.911 kb on - strandat 758.045 kb on + strand, within QEN71_RS03405at 758.045 kb on + strand, within QEN71_RS03405at 758.046 kb on - strand, within QEN71_RS03405at 758.046 kb on - strand, within QEN71_RS03405at 758.046 kb on - strand, within QEN71_RS03405at 758.046 kb on - strand, within QEN71_RS03405at 758.046 kb on - strand, within QEN71_RS03405at 758.078 kb on + strand, within QEN71_RS03405at 758.170 kb on + strand, within QEN71_RS03405at 758.170 kb on + strand, within QEN71_RS03405at 758.171 kb on - strand, within QEN71_RS03405at 758.192 kb on + strand, within QEN71_RS03405at 758.192 kb on + strand, within QEN71_RS03405at 758.193 kb on - strand, within QEN71_RS03405at 758.193 kb on - strand, within QEN71_RS03405at 758.213 kb on + strand, within QEN71_RS03405at 758.213 kb on + strand, within QEN71_RS03405at 758.213 kb on + strand, within QEN71_RS03405at 758.253 kb on - strand, within QEN71_RS03405at 758.315 kb on + strand, within QEN71_RS03405at 758.315 kb on + strand, within QEN71_RS03405at 758.316 kb on - strand, within QEN71_RS03405at 758.316 kb on - strand, within QEN71_RS03405at 758.354 kb on + strand, within QEN71_RS03405at 758.354 kb on + strand, within QEN71_RS03405at 758.354 kb on + strand, within QEN71_RS03405at 758.354 kb on + strand, within QEN71_RS03405at 758.355 kb on - strand, within QEN71_RS03405at 758.355 kb on - strand, within QEN71_RS03405at 758.355 kb on - strand, within QEN71_RS03405at 758.355 kb on - strand, within QEN71_RS03405at 758.356 kb on + strand, within QEN71_RS03405at 758.356 kb on + strand, within QEN71_RS03405at 758.357 kb on - strand, within QEN71_RS03405at 758.357 kb on - strand, within QEN71_RS03405at 758.457 kb on - strand, within QEN71_RS03405at 758.486 kb on + strand, within QEN71_RS03405at 758.486 kb on + strand, within QEN71_RS03405at 758.487 kb on - strand, within QEN71_RS03405at 758.487 kb on - strand, within QEN71_RS03405at 758.487 kb on - strand, within QEN71_RS03405

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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755,624 + QEN71_RS03395 0.10 -0.4
755,625 + QEN71_RS03395 0.10 +0.3
755,625 + QEN71_RS03395 0.10 +0.1
755,626 - QEN71_RS03395 0.10 -0.5
755,626 - QEN71_RS03395 0.10 +0.3
755,626 - QEN71_RS03395 0.10 -2.0
755,626 - QEN71_RS03395 0.10 +0.4
755,626 - QEN71_RS03395 0.10 +0.3
755,690 + QEN71_RS03395 0.17 -1.1
755,690 + QEN71_RS03395 0.17 +0.1
755,690 + QEN71_RS03395 0.17 +1.1
755,690 + QEN71_RS03395 0.17 +1.1
755,691 - QEN71_RS03395 0.18 -0.5
755,691 - QEN71_RS03395 0.18 -0.1
755,718 - QEN71_RS03395 0.21 +0.1
755,826 - QEN71_RS03395 0.32 +1.1
755,826 - QEN71_RS03395 0.32 -1.9
755,912 + QEN71_RS03395 0.42 +0.9
755,945 + QEN71_RS03395 0.45 +0.5
755,945 + QEN71_RS03395 0.45 +0.1
755,946 - QEN71_RS03395 0.45 -0.4
755,946 - QEN71_RS03395 0.45 +0.1
755,946 - QEN71_RS03395 0.45 -0.2
755,975 + QEN71_RS03395 0.49 +1.6
755,975 + QEN71_RS03395 0.49 +0.4
756,100 - QEN71_RS03395 0.62 -0.9
756,123 + QEN71_RS03395 0.65 -1.0
756,124 - QEN71_RS03395 0.65 -0.9
756,124 - QEN71_RS03395 0.65 -0.1
756,124 - QEN71_RS03395 0.65 -0.2
756,344 - QEN71_RS03395 0.89 +0.4
756,354 + -1.0
756,355 - -0.4
756,355 - -0.7
756,445 - -1.4
756,497 + +1.0
756,497 + -0.1
756,497 + +0.1
756,498 - -1.2
756,498 - +0.8
756,498 - -2.5
756,498 - +0.9
756,498 - +0.3
756,612 + -0.6
756,613 - -0.4
756,613 - +1.1
756,613 - -0.9
756,847 + QEN71_RS03400 0.24 -0.4
756,847 + QEN71_RS03400 0.24 -0.5
756,847 + QEN71_RS03400 0.24 -0.5
756,847 + QEN71_RS03400 0.24 -1.0
756,847 + QEN71_RS03400 0.24 -1.1
756,847 + QEN71_RS03400 0.24 -0.6
756,847 + QEN71_RS03400 0.24 -1.9
756,848 - QEN71_RS03400 0.24 +0.6
756,848 - QEN71_RS03400 0.24 -0.5
756,922 + QEN71_RS03400 0.32 +0.2
756,922 + QEN71_RS03400 0.32 -1.0
756,922 + QEN71_RS03400 0.32 -0.9
756,922 + QEN71_RS03400 0.32 -0.2
756,922 + QEN71_RS03400 0.32 -0.2
756,922 + QEN71_RS03400 0.32 -1.3
756,923 - QEN71_RS03400 0.32 +0.5
756,923 - QEN71_RS03400 0.32 -0.4
756,923 - QEN71_RS03400 0.32 +0.0
756,923 - QEN71_RS03400 0.32 -0.8
756,923 - QEN71_RS03400 0.32 -0.7
756,925 - QEN71_RS03400 0.32 -0.2
756,925 - QEN71_RS03400 0.32 +0.1
756,961 + QEN71_RS03400 0.36 -1.8
756,961 + QEN71_RS03400 0.36 -0.7
756,961 + QEN71_RS03400 0.36 +0.1
757,054 + QEN71_RS03400 0.45 +0.7
757,054 + QEN71_RS03400 0.45 -0.4
757,054 + QEN71_RS03400 0.45 +0.2
757,055 - QEN71_RS03400 0.45 +0.4
757,213 + QEN71_RS03400 0.61 +0.0
757,213 + QEN71_RS03400 0.61 -0.3
757,214 - QEN71_RS03400 0.61 -0.3
757,342 + QEN71_RS03400 0.74 -0.7
757,342 + QEN71_RS03400 0.74 -0.6
757,343 - QEN71_RS03400 0.74 +0.6
757,343 - QEN71_RS03400 0.74 +0.1
757,343 - QEN71_RS03400 0.74 +1.8
757,343 - QEN71_RS03400 0.74 +0.3
757,464 + QEN71_RS03400 0.86 -0.2
757,464 + QEN71_RS03400 0.86 +0.7
757,501 + -0.2
757,501 + -1.4
757,597 + -0.2
757,597 + -0.6
757,598 - +0.3
757,643 + +0.3
757,644 - +0.8
757,644 - +0.7
757,644 - +0.5
757,653 + -0.8
757,701 + -0.5
757,718 - +0.1
757,718 - -0.3
757,748 + +0.1
757,792 + -0.5
757,792 + -0.0
757,821 + +1.0
757,821 + -0.8
757,821 + +0.1
757,821 + -1.2
757,821 + -0.2
757,821 + +0.1
757,822 - -0.0
757,822 - -0.5
757,822 - +0.5
757,822 - -1.0
757,822 - -0.0
757,822 - -0.9
757,822 - +0.3
757,822 - -0.0
757,824 + -0.2
757,824 + -1.7
757,824 + -0.1
757,824 + -1.0
757,824 + -0.2
757,824 + -0.4
757,824 + -0.7
757,825 - +0.1
757,825 - -1.6
757,825 - -0.1
757,825 - +0.1
757,825 - -0.7
757,825 - +0.1
757,850 + -0.6
757,850 + -1.3
757,851 - +0.1
757,851 - -0.9
757,889 + +2.1
757,890 - -1.6
757,910 + -0.6
757,910 + -0.2
757,911 - +0.2
758,045 + QEN71_RS03405 0.12 +0.2
758,045 + QEN71_RS03405 0.12 -0.4
758,046 - QEN71_RS03405 0.12 -0.9
758,046 - QEN71_RS03405 0.12 +0.1
758,046 - QEN71_RS03405 0.12 +0.4
758,046 - QEN71_RS03405 0.12 -0.8
758,046 - QEN71_RS03405 0.12 +0.4
758,078 + QEN71_RS03405 0.14 +0.3
758,170 + QEN71_RS03405 0.20 -0.2
758,170 + QEN71_RS03405 0.20 +1.0
758,171 - QEN71_RS03405 0.20 -0.9
758,192 + QEN71_RS03405 0.21 -0.4
758,192 + QEN71_RS03405 0.21 -1.4
758,193 - QEN71_RS03405 0.21 +1.7
758,193 - QEN71_RS03405 0.21 +0.1
758,213 + QEN71_RS03405 0.22 +2.1
758,213 + QEN71_RS03405 0.22 -0.5
758,213 + QEN71_RS03405 0.22 -1.4
758,253 - QEN71_RS03405 0.25 -0.1
758,315 + QEN71_RS03405 0.29 -0.2
758,315 + QEN71_RS03405 0.29 +0.2
758,316 - QEN71_RS03405 0.29 -0.8
758,316 - QEN71_RS03405 0.29 +1.1
758,354 + QEN71_RS03405 0.31 +0.3
758,354 + QEN71_RS03405 0.31 -0.3
758,354 + QEN71_RS03405 0.31 +0.3
758,354 + QEN71_RS03405 0.31 -0.9
758,355 - QEN71_RS03405 0.31 -2.2
758,355 - QEN71_RS03405 0.31 +1.2
758,355 - QEN71_RS03405 0.31 -1.1
758,355 - QEN71_RS03405 0.31 +1.5
758,356 + QEN71_RS03405 0.31 -1.1
758,356 + QEN71_RS03405 0.31 +0.7
758,357 - QEN71_RS03405 0.31 -0.2
758,357 - QEN71_RS03405 0.31 -0.2
758,457 - QEN71_RS03405 0.37 -0.1
758,486 + QEN71_RS03405 0.39 -0.6
758,486 + QEN71_RS03405 0.39 +0.3
758,487 - QEN71_RS03405 0.39 +0.3
758,487 - QEN71_RS03405 0.39 -0.4
758,487 - QEN71_RS03405 0.39 +1.0

Or see this region's nucleotide sequence