Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03040

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03035 and QEN71_RS03040 are separated by 119 nucleotidesQEN71_RS03040 and QEN71_RS03045 overlap by 4 nucleotides QEN71_RS03035: QEN71_RS03035 - bifunctional riboflavin kinase/FAD synthetase, at 678,680 to 679,672 _RS03035 QEN71_RS03040: QEN71_RS03040 - phosphoribosylglycinamide formyltransferase, at 679,792 to 680,457 _RS03040 QEN71_RS03045: QEN71_RS03045 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 680,454 to 681,713 _RS03045 Position (kb) 679 680 681Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 679.723 kb on - strandat 679.723 kb on - strandat 679.723 kb on - strandat 679.724 kb on + strandat 679.724 kb on + strandat 679.725 kb on - strandat 679.725 kb on - strandat 679.725 kb on - strandat 679.725 kb on - strandat 679.738 kb on + strandat 679.739 kb on - strandat 679.739 kb on - strandat 679.739 kb on - strandat 679.780 kb on + strandat 679.781 kb on - strandat 679.781 kb on - strandat 679.781 kb on - strandat 679.781 kb on - strandat 680.201 kb on + strand, within QEN71_RS03040at 680.201 kb on + strand, within QEN71_RS03040at 680.201 kb on + strand, within QEN71_RS03040at 680.202 kb on - strand, within QEN71_RS03040at 680.202 kb on - strand, within QEN71_RS03040at 680.202 kb on - strand, within QEN71_RS03040at 680.202 kb on - strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.319 kb on + strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.320 kb on - strand, within QEN71_RS03040at 680.323 kb on + strand, within QEN71_RS03040at 680.323 kb on + strand, within QEN71_RS03040at 680.324 kb on - strand, within QEN71_RS03040at 680.324 kb on - strand, within QEN71_RS03040at 680.324 kb on - strand, within QEN71_RS03040at 680.428 kb on - strandat 680.428 kb on - strandat 680.428 kb on - strandat 680.509 kb on + strandat 680.510 kb on - strandat 680.664 kb on - strand, within QEN71_RS03045at 680.715 kb on - strand, within QEN71_RS03045at 680.715 kb on - strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.829 kb on + strand, within QEN71_RS03045at 680.830 kb on - strand, within QEN71_RS03045at 680.830 kb on - strand, within QEN71_RS03045at 680.830 kb on - strand, within QEN71_RS03045at 680.830 kb on - strand, within QEN71_RS03045at 680.830 kb on - strand, within QEN71_RS03045at 680.830 kb on - strand, within QEN71_RS03045at 680.892 kb on + strand, within QEN71_RS03045at 680.893 kb on - strand, within QEN71_RS03045at 680.994 kb on + strand, within QEN71_RS03045at 680.994 kb on + strand, within QEN71_RS03045at 681.101 kb on + strand, within QEN71_RS03045at 681.101 kb on + strand, within QEN71_RS03045at 681.101 kb on + strand, within QEN71_RS03045at 681.101 kb on + strand, within QEN71_RS03045at 681.101 kb on + strand, within QEN71_RS03045at 681.101 kb on + strand, within QEN71_RS03045at 681.101 kb on + strand, within QEN71_RS03045at 681.101 kb on + strand, within QEN71_RS03045at 681.102 kb on - strand, within QEN71_RS03045at 681.102 kb on - strand, within QEN71_RS03045at 681.102 kb on - strand, within QEN71_RS03045at 681.102 kb on - strand, within QEN71_RS03045at 681.102 kb on - strand, within QEN71_RS03045at 681.102 kb on - strand, within QEN71_RS03045at 681.102 kb on - strand, within QEN71_RS03045at 681.102 kb on - strand, within QEN71_RS03045at 681.208 kb on - strand, within QEN71_RS03045

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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679,723 - +0.1
679,723 - +0.1
679,723 - -2.8
679,724 + -0.3
679,724 + -1.9
679,725 - -0.7
679,725 - -1.7
679,725 - -0.8
679,725 - -0.3
679,738 + -0.6
679,739 - -1.0
679,739 - -0.2
679,739 - +0.3
679,780 + -0.2
679,781 - +0.3
679,781 - +0.1
679,781 - -0.6
679,781 - -0.2
680,201 + QEN71_RS03040 0.61 -1.3
680,201 + QEN71_RS03040 0.61 -2.1
680,201 + QEN71_RS03040 0.61 -2.2
680,202 - QEN71_RS03040 0.62 -0.5
680,202 - QEN71_RS03040 0.62 -1.6
680,202 - QEN71_RS03040 0.62 -1.8
680,202 - QEN71_RS03040 0.62 -1.6
680,319 + QEN71_RS03040 0.79 -2.9
680,319 + QEN71_RS03040 0.79 -1.5
680,319 + QEN71_RS03040 0.79 -0.5
680,319 + QEN71_RS03040 0.79 -2.0
680,319 + QEN71_RS03040 0.79 +0.2
680,319 + QEN71_RS03040 0.79 -1.6
680,319 + QEN71_RS03040 0.79 -1.6
680,319 + QEN71_RS03040 0.79 -1.5
680,319 + QEN71_RS03040 0.79 -1.7
680,319 + QEN71_RS03040 0.79 -2.5
680,319 + QEN71_RS03040 0.79 -1.0
680,319 + QEN71_RS03040 0.79 +0.0
680,319 + QEN71_RS03040 0.79 -0.2
680,319 + QEN71_RS03040 0.79 -2.4
680,319 + QEN71_RS03040 0.79 -1.7
680,319 + QEN71_RS03040 0.79 -0.8
680,320 - QEN71_RS03040 0.79 -1.2
680,320 - QEN71_RS03040 0.79 -1.5
680,320 - QEN71_RS03040 0.79 -0.6
680,320 - QEN71_RS03040 0.79 -1.2
680,320 - QEN71_RS03040 0.79 -3.1
680,320 - QEN71_RS03040 0.79 -2.1
680,320 - QEN71_RS03040 0.79 -1.2
680,320 - QEN71_RS03040 0.79 -0.0
680,320 - QEN71_RS03040 0.79 +1.1
680,320 - QEN71_RS03040 0.79 +1.2
680,320 - QEN71_RS03040 0.79 -1.4
680,320 - QEN71_RS03040 0.79 -0.7
680,320 - QEN71_RS03040 0.79 -2.1
680,320 - QEN71_RS03040 0.79 -0.0
680,320 - QEN71_RS03040 0.79 -0.6
680,320 - QEN71_RS03040 0.79 -2.0
680,320 - QEN71_RS03040 0.79 -0.9
680,320 - QEN71_RS03040 0.79 -1.6
680,320 - QEN71_RS03040 0.79 -2.7
680,320 - QEN71_RS03040 0.79 -1.1
680,320 - QEN71_RS03040 0.79 -3.6
680,323 + QEN71_RS03040 0.80 -2.0
680,323 + QEN71_RS03040 0.80 -2.7
680,324 - QEN71_RS03040 0.80 -2.5
680,324 - QEN71_RS03040 0.80 -2.7
680,324 - QEN71_RS03040 0.80 +0.1
680,428 - -2.0
680,428 - -0.4
680,428 - +0.3
680,509 + -0.1
680,510 - +0.4
680,664 - QEN71_RS03045 0.17 -1.4
680,715 - QEN71_RS03045 0.21 +0.1
680,715 - QEN71_RS03045 0.21 +0.3
680,829 + QEN71_RS03045 0.30 +0.3
680,829 + QEN71_RS03045 0.30 -0.1
680,829 + QEN71_RS03045 0.30 +0.1
680,829 + QEN71_RS03045 0.30 +1.4
680,829 + QEN71_RS03045 0.30 -0.2
680,829 + QEN71_RS03045 0.30 -0.4
680,829 + QEN71_RS03045 0.30 -0.2
680,829 + QEN71_RS03045 0.30 -0.0
680,829 + QEN71_RS03045 0.30 -0.1
680,829 + QEN71_RS03045 0.30 -0.6
680,829 + QEN71_RS03045 0.30 +1.1
680,829 + QEN71_RS03045 0.30 -0.6
680,829 + QEN71_RS03045 0.30 +1.0
680,830 - QEN71_RS03045 0.30 +0.3
680,830 - QEN71_RS03045 0.30 +0.2
680,830 - QEN71_RS03045 0.30 -1.2
680,830 - QEN71_RS03045 0.30 +0.8
680,830 - QEN71_RS03045 0.30 +0.7
680,830 - QEN71_RS03045 0.30 +0.3
680,892 + QEN71_RS03045 0.35 -0.4
680,893 - QEN71_RS03045 0.35 +0.0
680,994 + QEN71_RS03045 0.43 -0.6
680,994 + QEN71_RS03045 0.43 -1.5
681,101 + QEN71_RS03045 0.51 +0.6
681,101 + QEN71_RS03045 0.51 -0.4
681,101 + QEN71_RS03045 0.51 -1.2
681,101 + QEN71_RS03045 0.51 -1.2
681,101 + QEN71_RS03045 0.51 +0.6
681,101 + QEN71_RS03045 0.51 +1.5
681,101 + QEN71_RS03045 0.51 -1.5
681,101 + QEN71_RS03045 0.51 -0.4
681,102 - QEN71_RS03045 0.51 -0.5
681,102 - QEN71_RS03045 0.51 -1.7
681,102 - QEN71_RS03045 0.51 +0.3
681,102 - QEN71_RS03045 0.51 -0.1
681,102 - QEN71_RS03045 0.51 -0.2
681,102 - QEN71_RS03045 0.51 +0.3
681,102 - QEN71_RS03045 0.51 -1.4
681,102 - QEN71_RS03045 0.51 +2.3
681,208 - QEN71_RS03045 0.60 -0.5

Or see this region's nucleotide sequence