Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02995 and QEN71_RS03000 are separated by 539 nucleotides QEN71_RS03000 and QEN71_RS03005 overlap by 4 nucleotides QEN71_RS03005 and QEN71_RS03010 are separated by 108 nucleotides QEN71_RS03010 and QEN71_RS03015 are separated by 64 nucleotides
QEN71_RS02995: QEN71_RS02995 - cold shock domain-containing protein CspD, at 668,725 to 668,931
_RS02995
QEN71_RS03000: QEN71_RS03000 - ATP-dependent Clp protease adapter ClpS, at 669,471 to 669,785
_RS03000
QEN71_RS03005: QEN71_RS03005 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 669,782 to 672,082
_RS03005
QEN71_RS03010: QEN71_RS03010 - dUTP diphosphatase, at 672,191 to 672,637
_RS03010
QEN71_RS03015: QEN71_RS03015 - LLM class flavin-dependent oxidoreductase, at 672,702 to 673,706
_RS03015
Position (kb) 669
670
671
672
673 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 668.787 kb on + strand, within QEN71_RS02995 at 668.788 kb on - strand, within QEN71_RS02995 at 668.878 kb on - strand, within QEN71_RS02995 at 668.878 kb on - strand, within QEN71_RS02995 at 668.878 kb on - strand, within QEN71_RS02995 at 668.920 kb on - strand at 668.920 kb on - strand at 668.931 kb on + strand at 668.932 kb on - strand at 668.932 kb on - strand at 668.932 kb on - strand at 668.946 kb on + strand at 668.946 kb on + strand at 669.039 kb on - strand at 669.039 kb on - strand at 669.048 kb on - strand at 669.084 kb on + strand at 669.128 kb on + strand at 669.128 kb on + strand at 669.128 kb on + strand at 669.128 kb on + strand at 669.128 kb on + strand at 669.128 kb on + strand at 669.128 kb on + strand at 669.129 kb on - strand at 669.129 kb on - strand at 669.129 kb on - strand at 669.129 kb on - strand at 669.129 kb on - strand at 669.129 kb on - strand at 669.129 kb on - strand at 669.129 kb on - strand at 669.129 kb on - strand at 669.164 kb on + strand at 669.164 kb on + strand at 669.164 kb on + strand at 669.164 kb on + strand at 669.164 kb on + strand at 669.164 kb on + strand at 669.164 kb on + strand at 669.164 kb on + strand at 669.165 kb on - strand at 669.165 kb on - strand at 669.204 kb on + strand at 669.205 kb on - strand at 669.205 kb on - strand at 669.205 kb on - strand at 669.205 kb on - strand at 669.286 kb on - strand at 669.286 kb on - strand at 669.459 kb on + strand at 669.459 kb on + strand at 669.459 kb on + strand at 669.459 kb on + strand at 669.459 kb on + strand at 669.459 kb on + strand at 669.459 kb on + strand at 669.460 kb on - strand at 669.460 kb on - strand at 669.460 kb on - strand at 669.460 kb on - strand at 669.460 kb on - strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.470 kb on + strand at 669.471 kb on - strand at 669.471 kb on - strand at 669.471 kb on - strand at 669.505 kb on + strand, within QEN71_RS03000 at 669.505 kb on + strand, within QEN71_RS03000 at 669.505 kb on + strand, within QEN71_RS03000 at 669.505 kb on + strand, within QEN71_RS03000 at 669.505 kb on + strand, within QEN71_RS03000 at 669.505 kb on + strand, within QEN71_RS03000 at 669.505 kb on + strand, within QEN71_RS03000 at 669.506 kb on - strand, within QEN71_RS03000 at 669.506 kb on - strand, within QEN71_RS03000 at 669.506 kb on - strand, within QEN71_RS03000 at 669.506 kb on - strand, within QEN71_RS03000 at 669.612 kb on + strand, within QEN71_RS03000 at 669.612 kb on + strand, within QEN71_RS03000 at 669.612 kb on + strand, within QEN71_RS03000 at 669.612 kb on + strand, within QEN71_RS03000 at 669.612 kb on + strand, within QEN71_RS03000 at 669.612 kb on + strand, within QEN71_RS03000 at 669.613 kb on - strand, within QEN71_RS03000 at 669.620 kb on + strand, within QEN71_RS03000 at 669.620 kb on + strand, within QEN71_RS03000 at 669.620 kb on + strand, within QEN71_RS03000 at 669.620 kb on + strand, within QEN71_RS03000 at 669.690 kb on + strand, within QEN71_RS03000 at 669.690 kb on + strand, within QEN71_RS03000 at 669.690 kb on + strand, within QEN71_RS03000 at 669.690 kb on + strand, within QEN71_RS03000 at 669.691 kb on - strand, within QEN71_RS03000 at 669.691 kb on - strand, within QEN71_RS03000 at 669.691 kb on - strand, within QEN71_RS03000 at 669.976 kb on + strand at 669.977 kb on - strand at 670.148 kb on + strand, within QEN71_RS03005 at 670.148 kb on + strand, within QEN71_RS03005 at 670.148 kb on + strand, within QEN71_RS03005 at 670.148 kb on + strand, within QEN71_RS03005 at 670.149 kb on - strand, within QEN71_RS03005 at 670.151 kb on + strand, within QEN71_RS03005 at 670.151 kb on + strand, within QEN71_RS03005 at 670.152 kb on - strand, within QEN71_RS03005 at 670.152 kb on - strand, within QEN71_RS03005 at 670.152 kb on - strand, within QEN71_RS03005 at 670.306 kb on + strand, within QEN71_RS03005 at 670.306 kb on + strand, within QEN71_RS03005 at 670.306 kb on + strand, within QEN71_RS03005 at 670.306 kb on + strand, within QEN71_RS03005 at 670.565 kb on + strand, within QEN71_RS03005 at 670.565 kb on + strand, within QEN71_RS03005 at 670.565 kb on + strand, within QEN71_RS03005 at 670.565 kb on + strand, within QEN71_RS03005 at 670.566 kb on - strand, within QEN71_RS03005 at 670.566 kb on - strand, within QEN71_RS03005 at 670.566 kb on - strand, within QEN71_RS03005 at 670.654 kb on + strand, within QEN71_RS03005 at 670.907 kb on + strand, within QEN71_RS03005 at 670.907 kb on + strand, within QEN71_RS03005 at 670.907 kb on + strand, within QEN71_RS03005 at 670.907 kb on + strand, within QEN71_RS03005 at 670.907 kb on + strand, within QEN71_RS03005 at 670.907 kb on + strand, within QEN71_RS03005 at 670.907 kb on + strand, within QEN71_RS03005 at 670.908 kb on - strand, within QEN71_RS03005 at 670.908 kb on - strand, within QEN71_RS03005 at 670.908 kb on - strand, within QEN71_RS03005 at 670.908 kb on - strand, within QEN71_RS03005 at 670.908 kb on - strand, within QEN71_RS03005 at 670.908 kb on - strand, within QEN71_RS03005 at 670.984 kb on + strand, within QEN71_RS03005 at 670.985 kb on - strand, within QEN71_RS03005 at 671.360 kb on + strand, within QEN71_RS03005 at 671.361 kb on - strand, within QEN71_RS03005 at 671.361 kb on - strand, within QEN71_RS03005 at 671.408 kb on + strand, within QEN71_RS03005 at 671.408 kb on + strand, within QEN71_RS03005 at 671.408 kb on + strand, within QEN71_RS03005 at 671.409 kb on - strand, within QEN71_RS03005 at 671.409 kb on - strand, within QEN71_RS03005 at 671.409 kb on - strand, within QEN71_RS03005 at 671.506 kb on + strand, within QEN71_RS03005 at 671.510 kb on + strand, within QEN71_RS03005 at 671.510 kb on + strand, within QEN71_RS03005 at 671.510 kb on + strand, within QEN71_RS03005 at 671.510 kb on + strand, within QEN71_RS03005 at 671.510 kb on + strand, within QEN71_RS03005 at 671.510 kb on + strand, within QEN71_RS03005 at 671.510 kb on + strand, within QEN71_RS03005 at 671.510 kb on + strand, within QEN71_RS03005 at 671.511 kb on - strand, within QEN71_RS03005 at 672.080 kb on + strand at 672.080 kb on + strand at 672.080 kb on + strand at 672.080 kb on + strand at 672.081 kb on - strand at 672.081 kb on - strand at 672.081 kb on - strand at 672.081 kb on - strand at 672.081 kb on - strand at 672.140 kb on + strand at 672.140 kb on + strand at 672.695 kb on - strand at 672.742 kb on + strand at 672.743 kb on - strand at 672.743 kb on - strand at 672.743 kb on - strand at 672.743 kb on - strand at 672.764 kb on - strand at 672.907 kb on + strand, within QEN71_RS03015 at 672.908 kb on - strand, within QEN71_RS03015 at 672.908 kb on - strand, within QEN71_RS03015 at 672.958 kb on + strand, within QEN71_RS03015 at 672.978 kb on + strand, within QEN71_RS03015 at 672.978 kb on + strand, within QEN71_RS03015 at 672.979 kb on - strand, within QEN71_RS03015 at 672.979 kb on - strand, within QEN71_RS03015 at 672.979 kb on - strand, within QEN71_RS03015 at 673.054 kb on + strand, within QEN71_RS03015 at 673.054 kb on + strand, within QEN71_RS03015 at 673.055 kb on - strand, within QEN71_RS03015
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 668,787 + QEN71_RS02995 0.30 -1.7 668,788 - QEN71_RS02995 0.30 +1.6 668,878 - QEN71_RS02995 0.74 +1.0 668,878 - QEN71_RS02995 0.74 -0.1 668,878 - QEN71_RS02995 0.74 +0.8 668,920 - +0.6 668,920 - -0.5 668,931 + +1.1 668,932 - +0.6 668,932 - +1.2 668,932 - -0.2 668,946 + +0.2 668,946 + +0.4 669,039 - +1.1 669,039 - +0.5 669,048 - +2.3 669,084 + +0.7 669,128 + +1.7 669,128 + -1.4 669,128 + +0.4 669,128 + -0.9 669,128 + -0.1 669,128 + +0.7 669,128 + +0.1 669,129 - -0.6 669,129 - -0.2 669,129 - +0.5 669,129 - -0.3 669,129 - +0.2 669,129 - +0.2 669,129 - -0.8 669,129 - +0.1 669,129 - +0.1 669,164 + +1.8 669,164 + +0.1 669,164 + +0.1 669,164 + +0.8 669,164 + +1.2 669,164 + +0.2 669,164 + +0.1 669,164 + -0.2 669,165 - +1.5 669,165 - -0.6 669,204 + +0.3 669,205 - -1.2 669,205 - -0.0 669,205 - +1.1 669,205 - -1.2 669,286 - -1.8 669,286 - -0.6 669,459 + +0.8 669,459 + -0.2 669,459 + +0.9 669,459 + +0.8 669,459 + +1.1 669,459 + +1.2 669,459 + -0.1 669,460 - -0.2 669,460 - -0.7 669,460 - +0.6 669,460 - +1.2 669,460 - +1.1 669,470 + +0.5 669,470 + -0.5 669,470 + +1.1 669,470 + +0.6 669,470 + -0.0 669,470 + +1.1 669,470 + +0.3 669,470 + +2.9 669,470 + +1.4 669,470 + +0.2 669,470 + -0.5 669,470 + +0.5 669,471 - -1.6 669,471 - -0.2 669,471 - -0.5 669,505 + QEN71_RS03000 0.11 +0.0 669,505 + QEN71_RS03000 0.11 +0.6 669,505 + QEN71_RS03000 0.11 -0.0 669,505 + QEN71_RS03000 0.11 +0.7 669,505 + QEN71_RS03000 0.11 -0.3 669,505 + QEN71_RS03000 0.11 +1.0 669,505 + QEN71_RS03000 0.11 -0.4 669,506 - QEN71_RS03000 0.11 +0.1 669,506 - QEN71_RS03000 0.11 -0.0 669,506 - QEN71_RS03000 0.11 +1.2 669,506 - QEN71_RS03000 0.11 -2.2 669,612 + QEN71_RS03000 0.45 -2.4 669,612 + QEN71_RS03000 0.45 -0.3 669,612 + QEN71_RS03000 0.45 -0.7 669,612 + QEN71_RS03000 0.45 -1.4 669,612 + QEN71_RS03000 0.45 -0.7 669,612 + QEN71_RS03000 0.45 +0.2 669,613 - QEN71_RS03000 0.45 +0.1 669,620 + QEN71_RS03000 0.47 -0.3 669,620 + QEN71_RS03000 0.47 +1.2 669,620 + QEN71_RS03000 0.47 +0.3 669,620 + QEN71_RS03000 0.47 -0.2 669,690 + QEN71_RS03000 0.70 -0.2 669,690 + QEN71_RS03000 0.70 -0.5 669,690 + QEN71_RS03000 0.70 -1.4 669,690 + QEN71_RS03000 0.70 +1.3 669,691 - QEN71_RS03000 0.70 -0.2 669,691 - QEN71_RS03000 0.70 -0.2 669,691 - QEN71_RS03000 0.70 -0.2 669,976 + +0.1 669,977 - +1.1 670,148 + QEN71_RS03005 0.16 -1.1 670,148 + QEN71_RS03005 0.16 +2.7 670,148 + QEN71_RS03005 0.16 -2.0 670,148 + QEN71_RS03005 0.16 +0.1 670,149 - QEN71_RS03005 0.16 -1.2 670,151 + QEN71_RS03005 0.16 +0.2 670,151 + QEN71_RS03005 0.16 +0.1 670,152 - QEN71_RS03005 0.16 -1.1 670,152 - QEN71_RS03005 0.16 -0.7 670,152 - QEN71_RS03005 0.16 -0.9 670,306 + QEN71_RS03005 0.23 -0.2 670,306 + QEN71_RS03005 0.23 -0.7 670,306 + QEN71_RS03005 0.23 +0.1 670,306 + QEN71_RS03005 0.23 +0.1 670,565 + QEN71_RS03005 0.34 +0.1 670,565 + QEN71_RS03005 0.34 -2.2 670,565 + QEN71_RS03005 0.34 -0.5 670,565 + QEN71_RS03005 0.34 -0.2 670,566 - QEN71_RS03005 0.34 -1.7 670,566 - QEN71_RS03005 0.34 -0.5 670,566 - QEN71_RS03005 0.34 -1.1 670,654 + QEN71_RS03005 0.38 -1.5 670,907 + QEN71_RS03005 0.49 +0.9 670,907 + QEN71_RS03005 0.49 -0.5 670,907 + QEN71_RS03005 0.49 -0.2 670,907 + QEN71_RS03005 0.49 -0.7 670,907 + QEN71_RS03005 0.49 -0.7 670,907 + QEN71_RS03005 0.49 +0.1 670,907 + QEN71_RS03005 0.49 +0.1 670,908 - QEN71_RS03005 0.49 -1.1 670,908 - QEN71_RS03005 0.49 +0.1 670,908 - QEN71_RS03005 0.49 -0.2 670,908 - QEN71_RS03005 0.49 -1.7 670,908 - QEN71_RS03005 0.49 -2.2 670,908 - QEN71_RS03005 0.49 -1.4 670,984 + QEN71_RS03005 0.52 -1.5 670,985 - QEN71_RS03005 0.52 -0.5 671,360 + QEN71_RS03005 0.69 -0.5 671,361 - QEN71_RS03005 0.69 -0.9 671,361 - QEN71_RS03005 0.69 -0.9 671,408 + QEN71_RS03005 0.71 -0.9 671,408 + QEN71_RS03005 0.71 -1.1 671,408 + QEN71_RS03005 0.71 -0.7 671,409 - QEN71_RS03005 0.71 -0.5 671,409 - QEN71_RS03005 0.71 -1.2 671,409 - QEN71_RS03005 0.71 -0.7 671,506 + QEN71_RS03005 0.75 +0.1 671,510 + QEN71_RS03005 0.75 -0.2 671,510 + QEN71_RS03005 0.75 -0.5 671,510 + QEN71_RS03005 0.75 -0.5 671,510 + QEN71_RS03005 0.75 -1.7 671,510 + QEN71_RS03005 0.75 -0.2 671,510 + QEN71_RS03005 0.75 -0.7 671,510 + QEN71_RS03005 0.75 +0.1 671,510 + QEN71_RS03005 0.75 -0.9 671,511 - QEN71_RS03005 0.75 -0.5 672,080 + -0.3 672,080 + +1.0 672,080 + -0.4 672,080 + +1.1 672,081 - +0.5 672,081 - +1.6 672,081 - +0.4 672,081 - -0.4 672,081 - -1.1 672,140 + +0.4 672,140 + -0.8 672,695 - -0.4 672,742 + -1.7 672,743 - -1.3 672,743 - +1.5 672,743 - +0.4 672,743 - -1.5 672,764 - +0.1 672,907 + QEN71_RS03015 0.20 -0.4 672,908 - QEN71_RS03015 0.20 +0.1 672,908 - QEN71_RS03015 0.20 -0.7 672,958 + QEN71_RS03015 0.25 -0.5 672,978 + QEN71_RS03015 0.27 -0.6 672,978 + QEN71_RS03015 0.27 +0.3 672,979 - QEN71_RS03015 0.28 +0.3 672,979 - QEN71_RS03015 0.28 +0.2 672,979 - QEN71_RS03015 0.28 -0.2 673,054 + QEN71_RS03015 0.35 +0.1 673,054 + QEN71_RS03015 0.35 -0.7 673,055 - QEN71_RS03015 0.35 -0.9
Or see this region's nucleotide sequence