Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS01370 and QEN71_RS01375 are separated by 29 nucleotides QEN71_RS01375 and QEN71_RS01380 are separated by 78 nucleotides QEN71_RS01380 and QEN71_RS01385 are separated by 230 nucleotides
QEN71_RS01370: QEN71_RS01370 - ATP-binding protein, at 307,400 to 309,424
_RS01370
QEN71_RS01375: QEN71_RS01375 - sigma-54 dependent transcriptional regulator, at 309,454 to 310,812
_RS01375
QEN71_RS01380: QEN71_RS01380 - TlpA disulfide reductase family protein, at 310,891 to 311,415
_RS01380
QEN71_RS01385: QEN71_RS01385 - hypothetical protein, at 311,646 to 312,242
_RS01385
Position (kb) 309
310
311 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 308.465 kb on + strand, within QEN71_RS01370 at 308.466 kb on - strand, within QEN71_RS01370 at 308.466 kb on - strand, within QEN71_RS01370 at 308.532 kb on - strand, within QEN71_RS01370 at 308.532 kb on - strand, within QEN71_RS01370 at 308.705 kb on - strand, within QEN71_RS01370 at 308.890 kb on + strand, within QEN71_RS01370 at 308.890 kb on + strand, within QEN71_RS01370 at 308.891 kb on - strand, within QEN71_RS01370 at 308.891 kb on - strand, within QEN71_RS01370 at 308.891 kb on - strand, within QEN71_RS01370 at 309.139 kb on + strand, within QEN71_RS01370 at 309.395 kb on - strand at 309.447 kb on - strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.483 kb on + strand at 309.483 kb on + strand at 309.622 kb on - strand, within QEN71_RS01375 at 309.717 kb on + strand, within QEN71_RS01375 at 309.717 kb on + strand, within QEN71_RS01375 at 309.718 kb on - strand, within QEN71_RS01375 at 309.718 kb on - strand, within QEN71_RS01375 at 309.718 kb on - strand, within QEN71_RS01375 at 309.754 kb on + strand, within QEN71_RS01375 at 309.754 kb on + strand, within QEN71_RS01375 at 309.754 kb on + strand, within QEN71_RS01375 at 310.108 kb on + strand, within QEN71_RS01375 at 310.284 kb on - strand, within QEN71_RS01375 at 310.284 kb on - strand, within QEN71_RS01375 at 310.369 kb on + strand, within QEN71_RS01375 at 310.370 kb on - strand, within QEN71_RS01375 at 310.471 kb on + strand, within QEN71_RS01375 at 310.472 kb on - strand, within QEN71_RS01375 at 310.472 kb on - strand, within QEN71_RS01375 at 310.488 kb on + strand, within QEN71_RS01375 at 310.488 kb on + strand, within QEN71_RS01375 at 310.488 kb on + strand, within QEN71_RS01375 at 310.488 kb on + strand, within QEN71_RS01375 at 310.635 kb on + strand, within QEN71_RS01375 at 310.759 kb on + strand at 310.759 kb on + strand at 310.777 kb on + strand at 310.849 kb on + strand at 310.849 kb on + strand at 310.849 kb on + strand at 310.849 kb on + strand at 310.849 kb on + strand at 310.849 kb on + strand at 310.849 kb on + strand at 310.849 kb on + strand at 310.849 kb on + strand at 310.850 kb on - strand at 310.850 kb on - strand at 310.850 kb on - strand at 310.850 kb on - strand at 310.850 kb on - strand at 310.955 kb on + strand, within QEN71_RS01380 at 311.096 kb on + strand, within QEN71_RS01380 at 311.163 kb on - strand, within QEN71_RS01380 at 311.231 kb on + strand, within QEN71_RS01380 at 311.232 kb on - strand, within QEN71_RS01380 at 311.371 kb on - strand at 311.373 kb on - strand at 311.373 kb on - strand at 311.455 kb on - strand at 311.455 kb on - strand at 311.455 kb on - strand at 311.455 kb on - strand at 311.455 kb on - strand at 311.455 kb on - strand at 311.455 kb on - strand at 311.503 kb on + strand at 311.504 kb on - strand at 311.504 kb on - strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.513 kb on + strand at 311.514 kb on - strand at 311.514 kb on - strand at 311.514 kb on - strand at 311.514 kb on - strand at 311.514 kb on - strand at 311.514 kb on - strand at 311.514 kb on - strand at 311.514 kb on - strand at 311.514 kb on - strand at 311.514 kb on - strand at 311.518 kb on + strand at 311.518 kb on + strand at 311.518 kb on + strand at 311.518 kb on + strand at 311.519 kb on - strand at 311.519 kb on - strand at 311.519 kb on - strand at 311.519 kb on - strand at 311.554 kb on - strand at 311.605 kb on + strand at 311.625 kb on + strand at 311.625 kb on + strand at 311.625 kb on + strand at 311.626 kb on - strand at 311.626 kb on - strand at 311.654 kb on + strand at 311.660 kb on + strand at 311.660 kb on + strand at 311.661 kb on - strand at 311.661 kb on - strand at 311.775 kb on + strand, within QEN71_RS01385 at 311.775 kb on + strand, within QEN71_RS01385 at 311.775 kb on + strand, within QEN71_RS01385 at 311.775 kb on + strand, within QEN71_RS01385 at 311.775 kb on + strand, within QEN71_RS01385 at 311.775 kb on + strand, within QEN71_RS01385 at 311.775 kb on + strand, within QEN71_RS01385 at 311.775 kb on + strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.776 kb on - strand, within QEN71_RS01385 at 311.811 kb on + strand, within QEN71_RS01385 at 311.811 kb on + strand, within QEN71_RS01385 at 311.812 kb on - strand, within QEN71_RS01385
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 308,465 + QEN71_RS01370 0.53 -2.5 308,466 - QEN71_RS01370 0.53 -0.8 308,466 - QEN71_RS01370 0.53 -1.8 308,532 - QEN71_RS01370 0.56 -0.3 308,532 - QEN71_RS01370 0.56 -2.5 308,705 - QEN71_RS01370 0.64 -1.4 308,890 + QEN71_RS01370 0.74 +0.6 308,890 + QEN71_RS01370 0.74 -1.6 308,891 - QEN71_RS01370 0.74 -1.4 308,891 - QEN71_RS01370 0.74 -1.5 308,891 - QEN71_RS01370 0.74 -0.3 309,139 + QEN71_RS01370 0.86 +0.8 309,395 - -1.2 309,447 - -1.3 309,481 + -1.5 309,481 + -1.1 309,481 + -3.7 309,481 + -0.9 309,481 + -2.1 309,481 + -2.1 309,481 + -0.4 309,481 + -1.1 309,481 + -0.1 309,481 + -2.1 309,481 + -3.3 309,482 - -1.0 309,482 - -3.1 309,482 - -1.8 309,482 - +0.1 309,482 - -1.9 309,482 - -2.4 309,482 - -0.7 309,483 + -4.4 309,483 + -1.5 309,622 - QEN71_RS01375 0.12 -0.5 309,717 + QEN71_RS01375 0.19 -3.0 309,717 + QEN71_RS01375 0.19 -2.1 309,718 - QEN71_RS01375 0.19 -0.5 309,718 - QEN71_RS01375 0.19 -0.9 309,718 - QEN71_RS01375 0.19 -4.7 309,754 + QEN71_RS01375 0.22 -0.7 309,754 + QEN71_RS01375 0.22 -0.9 309,754 + QEN71_RS01375 0.22 -2.2 310,108 + QEN71_RS01375 0.48 -2.4 310,284 - QEN71_RS01375 0.61 -2.8 310,284 - QEN71_RS01375 0.61 -1.5 310,369 + QEN71_RS01375 0.67 -2.3 310,370 - QEN71_RS01375 0.67 -2.3 310,471 + QEN71_RS01375 0.75 -0.9 310,472 - QEN71_RS01375 0.75 -1.3 310,472 - QEN71_RS01375 0.75 -2.5 310,488 + QEN71_RS01375 0.76 -1.4 310,488 + QEN71_RS01375 0.76 -0.7 310,488 + QEN71_RS01375 0.76 -3.3 310,488 + QEN71_RS01375 0.76 -2.5 310,635 + QEN71_RS01375 0.87 -1.9 310,759 + -0.4 310,759 + -1.3 310,777 + -4.4 310,849 + +2.2 310,849 + -0.7 310,849 + -1.1 310,849 + +0.0 310,849 + -1.1 310,849 + +0.1 310,849 + -0.3 310,849 + +1.2 310,849 + +0.8 310,850 - -1.1 310,850 - +0.5 310,850 - +0.1 310,850 - -0.4 310,850 - -2.4 310,955 + QEN71_RS01380 0.12 -0.5 311,096 + QEN71_RS01380 0.39 +0.1 311,163 - QEN71_RS01380 0.52 +0.1 311,231 + QEN71_RS01380 0.65 +0.7 311,232 - QEN71_RS01380 0.65 -0.5 311,371 - +0.0 311,373 - -3.3 311,373 - -1.5 311,455 - -1.1 311,455 - -0.6 311,455 - -1.0 311,455 - -1.0 311,455 - +0.2 311,455 - -1.1 311,455 - +1.9 311,503 + -3.3 311,504 - -0.7 311,504 - -1.7 311,513 + -1.0 311,513 + +0.9 311,513 + +0.4 311,513 + -0.1 311,513 + +0.1 311,513 + +0.1 311,513 + -0.3 311,513 + +0.7 311,513 + +0.4 311,513 + +0.5 311,513 + -1.0 311,513 + -1.3 311,513 + +0.3 311,513 + -0.5 311,514 - +0.1 311,514 - -0.3 311,514 - -0.8 311,514 - +0.2 311,514 - -0.6 311,514 - +0.5 311,514 - -0.5 311,514 - +0.8 311,514 - +0.6 311,514 - +1.4 311,518 + -0.3 311,518 + -1.3 311,518 + +0.4 311,518 + +0.0 311,519 - -0.4 311,519 - -0.8 311,519 - -1.0 311,519 - -1.0 311,554 - -0.7 311,605 + +1.1 311,625 + +0.1 311,625 + +1.1 311,625 + -0.4 311,626 - -0.3 311,626 - -0.3 311,654 + -0.3 311,660 + -0.6 311,660 + -1.5 311,661 - +1.3 311,661 - +0.7 311,775 + QEN71_RS01385 0.22 -0.1 311,775 + QEN71_RS01385 0.22 +0.2 311,775 + QEN71_RS01385 0.22 -2.3 311,775 + QEN71_RS01385 0.22 +0.1 311,775 + QEN71_RS01385 0.22 +0.7 311,775 + QEN71_RS01385 0.22 -1.0 311,775 + QEN71_RS01385 0.22 +0.4 311,775 + QEN71_RS01385 0.22 -0.5 311,776 - QEN71_RS01385 0.22 -0.3 311,776 - QEN71_RS01385 0.22 -0.7 311,776 - QEN71_RS01385 0.22 +1.2 311,776 - QEN71_RS01385 0.22 +0.1 311,776 - QEN71_RS01385 0.22 +0.2 311,776 - QEN71_RS01385 0.22 -0.3 311,776 - QEN71_RS01385 0.22 +0.3 311,776 - QEN71_RS01385 0.22 -0.4 311,776 - QEN71_RS01385 0.22 +0.2 311,776 - QEN71_RS01385 0.22 -0.7 311,776 - QEN71_RS01385 0.22 +1.5 311,811 + QEN71_RS01385 0.28 -0.2 311,811 + QEN71_RS01385 0.28 -1.1 311,812 - QEN71_RS01385 0.28 +0.1
Or see this region's nucleotide sequence