Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS01365 and QEN71_RS01370 are separated by 3 nucleotides QEN71_RS01370 and QEN71_RS01375 are separated by 29 nucleotides
QEN71_RS01365: QEN71_RS01365 - dicarboxylate/amino acid:cation symporter, at 306,116 to 307,396
_RS01365
QEN71_RS01370: QEN71_RS01370 - ATP-binding protein, at 307,400 to 309,424
_RS01370
QEN71_RS01375: QEN71_RS01375 - sigma-54 dependent transcriptional regulator, at 309,454 to 310,812
_RS01375
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 306.746 kb on + strand, within QEN71_RS01365 at 306.746 kb on + strand, within QEN71_RS01365 at 306.746 kb on + strand, within QEN71_RS01365 at 306.747 kb on - strand, within QEN71_RS01365 at 306.747 kb on - strand, within QEN71_RS01365 at 306.747 kb on - strand, within QEN71_RS01365 at 306.794 kb on + strand, within QEN71_RS01365 at 306.794 kb on + strand, within QEN71_RS01365 at 306.794 kb on + strand, within QEN71_RS01365 at 306.794 kb on + strand, within QEN71_RS01365 at 306.794 kb on + strand, within QEN71_RS01365 at 306.794 kb on + strand, within QEN71_RS01365 at 306.794 kb on + strand, within QEN71_RS01365 at 306.795 kb on - strand, within QEN71_RS01365 at 306.795 kb on - strand, within QEN71_RS01365 at 306.795 kb on - strand, within QEN71_RS01365 at 306.878 kb on + strand, within QEN71_RS01365 at 306.878 kb on + strand, within QEN71_RS01365 at 306.878 kb on + strand, within QEN71_RS01365 at 306.878 kb on + strand, within QEN71_RS01365 at 306.879 kb on - strand, within QEN71_RS01365 at 306.879 kb on - strand, within QEN71_RS01365 at 307.008 kb on - strand, within QEN71_RS01365 at 307.037 kb on + strand, within QEN71_RS01365 at 307.037 kb on + strand, within QEN71_RS01365 at 307.037 kb on + strand, within QEN71_RS01365 at 307.037 kb on + strand, within QEN71_RS01365 at 307.037 kb on + strand, within QEN71_RS01365 at 307.037 kb on + strand, within QEN71_RS01365 at 307.037 kb on + strand, within QEN71_RS01365 at 307.038 kb on - strand, within QEN71_RS01365 at 307.038 kb on - strand, within QEN71_RS01365 at 307.038 kb on - strand, within QEN71_RS01365 at 307.038 kb on - strand, within QEN71_RS01365 at 307.038 kb on - strand, within QEN71_RS01365 at 307.038 kb on - strand, within QEN71_RS01365 at 307.038 kb on - strand, within QEN71_RS01365 at 307.038 kb on - strand, within QEN71_RS01365 at 307.040 kb on - strand, within QEN71_RS01365 at 307.368 kb on + strand at 307.368 kb on + strand at 307.368 kb on + strand at 307.368 kb on + strand at 307.369 kb on - strand at 307.441 kb on + strand at 307.441 kb on + strand at 307.442 kb on - strand at 307.442 kb on - strand at 307.487 kb on + strand at 307.487 kb on + strand at 307.497 kb on + strand at 307.497 kb on + strand at 307.497 kb on + strand at 307.497 kb on + strand at 307.497 kb on + strand at 307.498 kb on - strand at 307.498 kb on - strand at 307.498 kb on - strand at 307.694 kb on + strand, within QEN71_RS01370 at 307.695 kb on - strand, within QEN71_RS01370 at 307.709 kb on + strand, within QEN71_RS01370 at 307.709 kb on + strand, within QEN71_RS01370 at 307.709 kb on + strand, within QEN71_RS01370 at 307.709 kb on + strand, within QEN71_RS01370 at 307.709 kb on + strand, within QEN71_RS01370 at 307.709 kb on + strand, within QEN71_RS01370 at 307.710 kb on - strand, within QEN71_RS01370 at 307.710 kb on - strand, within QEN71_RS01370 at 307.710 kb on - strand, within QEN71_RS01370 at 307.710 kb on - strand, within QEN71_RS01370 at 307.710 kb on - strand, within QEN71_RS01370 at 307.710 kb on - strand, within QEN71_RS01370 at 307.787 kb on + strand, within QEN71_RS01370 at 307.787 kb on + strand, within QEN71_RS01370 at 307.787 kb on + strand, within QEN71_RS01370 at 307.788 kb on - strand, within QEN71_RS01370 at 307.788 kb on - strand, within QEN71_RS01370 at 307.788 kb on - strand, within QEN71_RS01370 at 307.788 kb on - strand, within QEN71_RS01370 at 307.829 kb on + strand, within QEN71_RS01370 at 307.904 kb on + strand, within QEN71_RS01370 at 307.904 kb on + strand, within QEN71_RS01370 at 307.904 kb on + strand, within QEN71_RS01370 at 307.904 kb on + strand, within QEN71_RS01370 at 307.904 kb on + strand, within QEN71_RS01370 at 307.904 kb on + strand, within QEN71_RS01370 at 307.905 kb on - strand, within QEN71_RS01370 at 307.905 kb on - strand, within QEN71_RS01370 at 307.905 kb on - strand, within QEN71_RS01370 at 307.919 kb on + strand, within QEN71_RS01370 at 307.919 kb on + strand, within QEN71_RS01370 at 307.992 kb on - strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.994 kb on + strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 307.995 kb on - strand, within QEN71_RS01370 at 308.150 kb on + strand, within QEN71_RS01370 at 308.150 kb on + strand, within QEN71_RS01370 at 308.151 kb on - strand, within QEN71_RS01370 at 308.151 kb on - strand, within QEN71_RS01370 at 308.151 kb on - strand, within QEN71_RS01370 at 308.151 kb on - strand, within QEN71_RS01370 at 308.170 kb on + strand, within QEN71_RS01370 at 308.170 kb on + strand, within QEN71_RS01370 at 308.171 kb on - strand, within QEN71_RS01370 at 308.171 kb on - strand, within QEN71_RS01370 at 308.195 kb on + strand, within QEN71_RS01370 at 308.195 kb on + strand, within QEN71_RS01370 at 308.195 kb on + strand, within QEN71_RS01370 at 308.196 kb on - strand, within QEN71_RS01370 at 308.196 kb on - strand, within QEN71_RS01370 at 308.196 kb on - strand, within QEN71_RS01370 at 308.196 kb on - strand, within QEN71_RS01370 at 308.196 kb on - strand, within QEN71_RS01370 at 308.196 kb on - strand, within QEN71_RS01370 at 308.196 kb on - strand, within QEN71_RS01370 at 308.210 kb on + strand, within QEN71_RS01370 at 308.211 kb on - strand, within QEN71_RS01370 at 308.309 kb on + strand, within QEN71_RS01370 at 308.310 kb on - strand, within QEN71_RS01370 at 308.438 kb on + strand, within QEN71_RS01370 at 308.438 kb on + strand, within QEN71_RS01370 at 308.438 kb on + strand, within QEN71_RS01370 at 308.438 kb on + strand, within QEN71_RS01370 at 308.438 kb on + strand, within QEN71_RS01370 at 308.438 kb on + strand, within QEN71_RS01370 at 308.438 kb on + strand, within QEN71_RS01370 at 308.438 kb on + strand, within QEN71_RS01370 at 308.439 kb on - strand, within QEN71_RS01370 at 308.439 kb on - strand, within QEN71_RS01370 at 308.439 kb on - strand, within QEN71_RS01370 at 308.465 kb on + strand, within QEN71_RS01370 at 308.466 kb on - strand, within QEN71_RS01370 at 308.466 kb on - strand, within QEN71_RS01370 at 308.532 kb on - strand, within QEN71_RS01370 at 308.532 kb on - strand, within QEN71_RS01370 at 308.705 kb on - strand, within QEN71_RS01370 at 308.890 kb on + strand, within QEN71_RS01370 at 308.890 kb on + strand, within QEN71_RS01370 at 308.891 kb on - strand, within QEN71_RS01370 at 308.891 kb on - strand, within QEN71_RS01370 at 308.891 kb on - strand, within QEN71_RS01370 at 309.139 kb on + strand, within QEN71_RS01370 at 309.395 kb on - strand at 309.447 kb on - strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.481 kb on + strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.482 kb on - strand at 309.483 kb on + strand at 309.483 kb on + strand at 309.622 kb on - strand, within QEN71_RS01375 at 309.717 kb on + strand, within QEN71_RS01375 at 309.717 kb on + strand, within QEN71_RS01375 at 309.718 kb on - strand, within QEN71_RS01375 at 309.718 kb on - strand, within QEN71_RS01375 at 309.718 kb on - strand, within QEN71_RS01375 at 309.754 kb on + strand, within QEN71_RS01375 at 309.754 kb on + strand, within QEN71_RS01375 at 309.754 kb on + strand, within QEN71_RS01375 at 310.108 kb on + strand, within QEN71_RS01375 at 310.284 kb on - strand, within QEN71_RS01375 at 310.284 kb on - strand, within QEN71_RS01375 at 310.369 kb on + strand, within QEN71_RS01375 at 310.370 kb on - strand, within QEN71_RS01375
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 306,746 + QEN71_RS01365 0.49 -1.5 306,746 + QEN71_RS01365 0.49 -4.1 306,746 + QEN71_RS01365 0.49 -2.8 306,747 - QEN71_RS01365 0.49 -3.7 306,747 - QEN71_RS01365 0.49 -2.6 306,747 - QEN71_RS01365 0.49 -3.2 306,794 + QEN71_RS01365 0.53 -3.9 306,794 + QEN71_RS01365 0.53 -2.6 306,794 + QEN71_RS01365 0.53 -1.9 306,794 + QEN71_RS01365 0.53 -2.2 306,794 + QEN71_RS01365 0.53 -2.0 306,794 + QEN71_RS01365 0.53 -1.1 306,794 + QEN71_RS01365 0.53 +0.1 306,795 - QEN71_RS01365 0.53 +0.1 306,795 - QEN71_RS01365 0.53 -2.0 306,795 - QEN71_RS01365 0.53 -3.5 306,878 + QEN71_RS01365 0.59 +0.1 306,878 + QEN71_RS01365 0.59 -1.4 306,878 + QEN71_RS01365 0.59 -2.9 306,878 + QEN71_RS01365 0.59 -4.7 306,879 - QEN71_RS01365 0.60 -2.8 306,879 - QEN71_RS01365 0.60 -1.0 307,008 - QEN71_RS01365 0.70 -1.5 307,037 + QEN71_RS01365 0.72 -3.9 307,037 + QEN71_RS01365 0.72 -3.3 307,037 + QEN71_RS01365 0.72 -0.9 307,037 + QEN71_RS01365 0.72 -1.0 307,037 + QEN71_RS01365 0.72 -0.1 307,037 + QEN71_RS01365 0.72 -2.2 307,037 + QEN71_RS01365 0.72 -3.1 307,038 - QEN71_RS01365 0.72 -0.3 307,038 - QEN71_RS01365 0.72 -1.9 307,038 - QEN71_RS01365 0.72 -1.9 307,038 - QEN71_RS01365 0.72 -1.6 307,038 - QEN71_RS01365 0.72 -2.5 307,038 - QEN71_RS01365 0.72 -1.4 307,038 - QEN71_RS01365 0.72 -1.5 307,038 - QEN71_RS01365 0.72 +0.1 307,040 - QEN71_RS01365 0.72 -2.7 307,368 + +0.1 307,368 + -0.6 307,368 + -1.6 307,368 + -0.6 307,369 - -1.3 307,441 + -0.0 307,441 + +0.7 307,442 - +1.1 307,442 - +0.1 307,487 + +0.7 307,487 + -2.3 307,497 + +0.1 307,497 + +0.0 307,497 + +0.5 307,497 + +1.7 307,497 + +0.6 307,498 - -1.3 307,498 - -0.8 307,498 - -1.4 307,694 + QEN71_RS01370 0.15 -2.1 307,695 - QEN71_RS01370 0.15 -2.8 307,709 + QEN71_RS01370 0.15 -0.5 307,709 + QEN71_RS01370 0.15 -0.7 307,709 + QEN71_RS01370 0.15 -2.9 307,709 + QEN71_RS01370 0.15 -2.1 307,709 + QEN71_RS01370 0.15 -0.3 307,709 + QEN71_RS01370 0.15 -3.3 307,710 - QEN71_RS01370 0.15 +0.1 307,710 - QEN71_RS01370 0.15 -0.9 307,710 - QEN71_RS01370 0.15 -0.9 307,710 - QEN71_RS01370 0.15 -1.8 307,710 - QEN71_RS01370 0.15 -1.9 307,710 - QEN71_RS01370 0.15 -2.5 307,787 + QEN71_RS01370 0.19 -1.0 307,787 + QEN71_RS01370 0.19 -0.3 307,787 + QEN71_RS01370 0.19 -0.3 307,788 - QEN71_RS01370 0.19 -2.2 307,788 - QEN71_RS01370 0.19 -2.4 307,788 - QEN71_RS01370 0.19 -1.3 307,788 - QEN71_RS01370 0.19 -0.3 307,829 + QEN71_RS01370 0.21 -0.3 307,904 + QEN71_RS01370 0.25 -2.0 307,904 + QEN71_RS01370 0.25 -2.6 307,904 + QEN71_RS01370 0.25 +1.1 307,904 + QEN71_RS01370 0.25 -2.5 307,904 + QEN71_RS01370 0.25 -1.7 307,904 + QEN71_RS01370 0.25 -0.5 307,905 - QEN71_RS01370 0.25 -4.8 307,905 - QEN71_RS01370 0.25 -1.6 307,905 - QEN71_RS01370 0.25 -1.2 307,919 + QEN71_RS01370 0.26 -0.7 307,919 + QEN71_RS01370 0.26 -2.3 307,992 - QEN71_RS01370 0.29 -2.1 307,994 + QEN71_RS01370 0.29 -0.9 307,994 + QEN71_RS01370 0.29 +0.6 307,994 + QEN71_RS01370 0.29 -0.7 307,994 + QEN71_RS01370 0.29 +0.1 307,994 + QEN71_RS01370 0.29 -1.2 307,994 + QEN71_RS01370 0.29 -3.1 307,994 + QEN71_RS01370 0.29 -2.3 307,994 + QEN71_RS01370 0.29 -0.3 307,994 + QEN71_RS01370 0.29 -0.3 307,994 + QEN71_RS01370 0.29 -0.8 307,994 + QEN71_RS01370 0.29 -2.4 307,994 + QEN71_RS01370 0.29 +0.1 307,994 + QEN71_RS01370 0.29 -0.3 307,994 + QEN71_RS01370 0.29 -1.2 307,994 + QEN71_RS01370 0.29 -0.2 307,995 - QEN71_RS01370 0.29 -0.5 307,995 - QEN71_RS01370 0.29 -2.8 307,995 - QEN71_RS01370 0.29 -2.2 307,995 - QEN71_RS01370 0.29 -0.4 307,995 - QEN71_RS01370 0.29 -1.6 307,995 - QEN71_RS01370 0.29 -0.9 307,995 - QEN71_RS01370 0.29 -2.3 307,995 - QEN71_RS01370 0.29 -2.7 307,995 - QEN71_RS01370 0.29 -3.1 307,995 - QEN71_RS01370 0.29 -1.6 307,995 - QEN71_RS01370 0.29 -0.5 307,995 - QEN71_RS01370 0.29 -2.3 308,150 + QEN71_RS01370 0.37 -0.9 308,150 + QEN71_RS01370 0.37 -2.0 308,151 - QEN71_RS01370 0.37 -3.5 308,151 - QEN71_RS01370 0.37 -2.1 308,151 - QEN71_RS01370 0.37 -0.1 308,151 - QEN71_RS01370 0.37 -3.0 308,170 + QEN71_RS01370 0.38 -2.4 308,170 + QEN71_RS01370 0.38 +0.1 308,171 - QEN71_RS01370 0.38 -2.3 308,171 - QEN71_RS01370 0.38 -1.3 308,195 + QEN71_RS01370 0.39 -1.5 308,195 + QEN71_RS01370 0.39 -0.4 308,195 + QEN71_RS01370 0.39 -0.5 308,196 - QEN71_RS01370 0.39 -0.8 308,196 - QEN71_RS01370 0.39 -1.7 308,196 - QEN71_RS01370 0.39 -0.3 308,196 - QEN71_RS01370 0.39 -2.2 308,196 - QEN71_RS01370 0.39 -2.7 308,196 - QEN71_RS01370 0.39 -3.2 308,196 - QEN71_RS01370 0.39 -2.8 308,210 + QEN71_RS01370 0.40 -1.1 308,211 - QEN71_RS01370 0.40 +0.8 308,309 + QEN71_RS01370 0.45 +0.1 308,310 - QEN71_RS01370 0.45 -1.3 308,438 + QEN71_RS01370 0.51 -0.9 308,438 + QEN71_RS01370 0.51 -1.4 308,438 + QEN71_RS01370 0.51 -1.8 308,438 + QEN71_RS01370 0.51 +0.5 308,438 + QEN71_RS01370 0.51 -0.3 308,438 + QEN71_RS01370 0.51 -0.5 308,438 + QEN71_RS01370 0.51 -0.9 308,438 + QEN71_RS01370 0.51 +0.6 308,439 - QEN71_RS01370 0.51 -1.5 308,439 - QEN71_RS01370 0.51 -0.3 308,439 - QEN71_RS01370 0.51 -0.3 308,465 + QEN71_RS01370 0.53 -2.5 308,466 - QEN71_RS01370 0.53 -0.8 308,466 - QEN71_RS01370 0.53 -1.8 308,532 - QEN71_RS01370 0.56 -0.3 308,532 - QEN71_RS01370 0.56 -2.5 308,705 - QEN71_RS01370 0.64 -1.4 308,890 + QEN71_RS01370 0.74 +0.6 308,890 + QEN71_RS01370 0.74 -1.6 308,891 - QEN71_RS01370 0.74 -1.4 308,891 - QEN71_RS01370 0.74 -1.5 308,891 - QEN71_RS01370 0.74 -0.3 309,139 + QEN71_RS01370 0.86 +0.8 309,395 - -1.2 309,447 - -1.3 309,481 + -1.5 309,481 + -1.1 309,481 + -3.7 309,481 + -0.9 309,481 + -2.1 309,481 + -2.1 309,481 + -0.4 309,481 + -1.1 309,481 + -0.1 309,481 + -2.1 309,481 + -3.3 309,482 - -1.0 309,482 - -3.1 309,482 - -1.8 309,482 - +0.1 309,482 - -1.9 309,482 - -2.4 309,482 - -0.7 309,483 + -4.4 309,483 + -1.5 309,622 - QEN71_RS01375 0.12 -0.5 309,717 + QEN71_RS01375 0.19 -3.0 309,717 + QEN71_RS01375 0.19 -2.1 309,718 - QEN71_RS01375 0.19 -0.5 309,718 - QEN71_RS01375 0.19 -0.9 309,718 - QEN71_RS01375 0.19 -4.7 309,754 + QEN71_RS01375 0.22 -0.7 309,754 + QEN71_RS01375 0.22 -0.9 309,754 + QEN71_RS01375 0.22 -2.2 310,108 + QEN71_RS01375 0.48 -2.4 310,284 - QEN71_RS01375 0.61 -2.8 310,284 - QEN71_RS01375 0.61 -1.5 310,369 + QEN71_RS01375 0.67 -2.3 310,370 - QEN71_RS01375 0.67 -2.3
Or see this region's nucleotide sequence