Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01315

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01310 and QEN71_RS01315 are separated by 98 nucleotidesQEN71_RS01315 and QEN71_RS01320 are separated by 73 nucleotidesQEN71_RS01320 and QEN71_RS01325 are separated by 13 nucleotides QEN71_RS01310: QEN71_RS01310 - transcriptional regulator GcvA, at 294,427 to 295,431 _RS01310 QEN71_RS01315: QEN71_RS01315 - DUF2917 domain-containing protein, at 295,530 to 295,856 _RS01315 QEN71_RS01320: QEN71_RS01320 - lipoyl(octanoyl) transferase LipB, at 295,930 to 296,697 _RS01320 QEN71_RS01325: QEN71_RS01325 - lipoyl synthase, at 296,711 to 297,712 _RS01325 Position (kb) 295 296Strain fitness (log2 ratio) -2 -1 0 1 2at 294.538 kb on + strand, within QEN71_RS01310at 294.538 kb on + strand, within QEN71_RS01310at 294.539 kb on - strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.629 kb on + strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.630 kb on - strand, within QEN71_RS01310at 294.632 kb on + strand, within QEN71_RS01310at 294.632 kb on + strand, within QEN71_RS01310at 294.632 kb on + strand, within QEN71_RS01310at 294.632 kb on + strand, within QEN71_RS01310at 294.632 kb on + strand, within QEN71_RS01310at 294.632 kb on + strand, within QEN71_RS01310at 294.633 kb on - strand, within QEN71_RS01310at 294.633 kb on - strand, within QEN71_RS01310at 294.633 kb on - strand, within QEN71_RS01310at 294.633 kb on - strand, within QEN71_RS01310at 294.633 kb on - strand, within QEN71_RS01310at 294.633 kb on - strand, within QEN71_RS01310at 294.633 kb on - strand, within QEN71_RS01310at 294.633 kb on - strand, within QEN71_RS01310at 294.773 kb on + strand, within QEN71_RS01310at 294.773 kb on + strand, within QEN71_RS01310at 294.773 kb on + strand, within QEN71_RS01310at 294.773 kb on + strand, within QEN71_RS01310at 294.774 kb on - strand, within QEN71_RS01310at 294.774 kb on - strand, within QEN71_RS01310at 294.774 kb on - strand, within QEN71_RS01310at 294.774 kb on - strand, within QEN71_RS01310at 294.838 kb on + strand, within QEN71_RS01310at 294.838 kb on + strand, within QEN71_RS01310at 294.838 kb on + strand, within QEN71_RS01310at 294.838 kb on + strand, within QEN71_RS01310at 294.838 kb on + strand, within QEN71_RS01310at 294.839 kb on - strand, within QEN71_RS01310at 294.839 kb on - strand, within QEN71_RS01310at 294.839 kb on - strand, within QEN71_RS01310at 294.839 kb on - strand, within QEN71_RS01310at 294.839 kb on - strand, within QEN71_RS01310at 294.839 kb on - strand, within QEN71_RS01310at 294.839 kb on - strand, within QEN71_RS01310at 294.839 kb on - strand, within QEN71_RS01310at 294.839 kb on - strand, within QEN71_RS01310at 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.337 kb on + strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.338 kb on - strandat 295.414 kb on + strandat 295.414 kb on + strandat 295.414 kb on + strandat 295.415 kb on - strandat 295.449 kb on - strandat 295.475 kb on - strandat 295.499 kb on + strandat 295.547 kb on + strandat 295.547 kb on + strandat 295.548 kb on - strandat 295.568 kb on - strand, within QEN71_RS01315at 295.665 kb on + strand, within QEN71_RS01315at 295.665 kb on + strand, within QEN71_RS01315at 295.666 kb on - strand, within QEN71_RS01315at 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.877 kb on + strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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294,538 + QEN71_RS01310 0.11 -1.4
294,538 + QEN71_RS01310 0.11 -0.5
294,539 - QEN71_RS01310 0.11 +1.4
294,629 + QEN71_RS01310 0.20 +0.3
294,629 + QEN71_RS01310 0.20 +0.3
294,629 + QEN71_RS01310 0.20 +0.7
294,629 + QEN71_RS01310 0.20 -1.1
294,629 + QEN71_RS01310 0.20 +0.3
294,629 + QEN71_RS01310 0.20 -1.1
294,629 + QEN71_RS01310 0.20 -1.0
294,629 + QEN71_RS01310 0.20 -0.4
294,629 + QEN71_RS01310 0.20 -0.4
294,629 + QEN71_RS01310 0.20 -0.4
294,629 + QEN71_RS01310 0.20 -0.6
294,629 + QEN71_RS01310 0.20 -0.2
294,630 - QEN71_RS01310 0.20 +0.1
294,630 - QEN71_RS01310 0.20 +1.4
294,630 - QEN71_RS01310 0.20 -0.3
294,630 - QEN71_RS01310 0.20 -2.0
294,630 - QEN71_RS01310 0.20 -0.0
294,630 - QEN71_RS01310 0.20 -1.1
294,630 - QEN71_RS01310 0.20 +0.3
294,630 - QEN71_RS01310 0.20 -0.7
294,630 - QEN71_RS01310 0.20 +1.3
294,630 - QEN71_RS01310 0.20 +1.2
294,632 + QEN71_RS01310 0.20 -1.5
294,632 + QEN71_RS01310 0.20 -0.1
294,632 + QEN71_RS01310 0.20 -0.5
294,632 + QEN71_RS01310 0.20 +0.0
294,632 + QEN71_RS01310 0.20 -1.7
294,632 + QEN71_RS01310 0.20 -1.4
294,633 - QEN71_RS01310 0.20 -0.5
294,633 - QEN71_RS01310 0.20 -0.2
294,633 - QEN71_RS01310 0.20 -0.5
294,633 - QEN71_RS01310 0.20 -0.3
294,633 - QEN71_RS01310 0.20 +0.4
294,633 - QEN71_RS01310 0.20 -1.5
294,633 - QEN71_RS01310 0.20 +0.1
294,633 - QEN71_RS01310 0.20 -0.2
294,773 + QEN71_RS01310 0.34 -1.1
294,773 + QEN71_RS01310 0.34 -1.9
294,773 + QEN71_RS01310 0.34 -0.7
294,773 + QEN71_RS01310 0.34 -0.2
294,774 - QEN71_RS01310 0.35 -0.3
294,774 - QEN71_RS01310 0.35 -0.5
294,774 - QEN71_RS01310 0.35 +0.2
294,774 - QEN71_RS01310 0.35 -0.6
294,838 + QEN71_RS01310 0.41 -0.3
294,838 + QEN71_RS01310 0.41 -0.6
294,838 + QEN71_RS01310 0.41 +0.3
294,838 + QEN71_RS01310 0.41 -0.7
294,838 + QEN71_RS01310 0.41 -0.4
294,839 - QEN71_RS01310 0.41 -0.1
294,839 - QEN71_RS01310 0.41 -0.5
294,839 - QEN71_RS01310 0.41 +0.3
294,839 - QEN71_RS01310 0.41 -1.2
294,839 - QEN71_RS01310 0.41 -0.7
294,839 - QEN71_RS01310 0.41 -0.3
294,839 - QEN71_RS01310 0.41 -2.1
294,839 - QEN71_RS01310 0.41 -0.5
294,839 - QEN71_RS01310 0.41 +2.5
295,337 + -1.2
295,337 + +0.1
295,337 + +0.9
295,337 + +0.1
295,337 + +0.8
295,337 + +0.1
295,337 + +1.0
295,337 + +0.7
295,337 + -0.3
295,337 + -0.1
295,337 + -0.5
295,337 + -0.2
295,338 - +1.2
295,338 - -0.1
295,338 - -0.3
295,338 - +0.1
295,338 - -0.7
295,338 - +0.4
295,338 - -0.4
295,338 - +0.5
295,338 - +0.1
295,338 - +0.2
295,338 - -0.9
295,338 - -1.0
295,338 - -2.0
295,414 + -0.7
295,414 + +0.7
295,414 + -1.2
295,415 - -0.2
295,449 - +0.9
295,475 - -0.1
295,499 + -0.3
295,547 + +1.7
295,547 + -0.2
295,548 - +0.8
295,568 - QEN71_RS01315 0.12 -0.7
295,665 + QEN71_RS01315 0.41 +0.4
295,665 + QEN71_RS01315 0.41 +0.7
295,666 - QEN71_RS01315 0.42 +0.1
295,877 + -1.1
295,877 + -1.0
295,877 + +0.4
295,877 + -0.1
295,877 + -0.1
295,877 + -0.2
295,877 + -0.9
295,877 + -0.1
295,877 + -0.5
295,878 - -1.6
295,878 - -0.2
295,878 - -0.1
295,878 - +0.6
295,878 - +1.1
295,878 - -1.9
295,878 - -0.9
295,878 - -0.1
295,878 - +0.1
295,878 - -0.0
295,878 - -0.3
295,878 - -0.9

Or see this region's nucleotide sequence