Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00230

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00225 and QEN71_RS00230 are separated by 10 nucleotidesQEN71_RS00230 and QEN71_RS00235 are separated by 128 nucleotidesQEN71_RS00235 and QEN71_RS00240 overlap by 4 nucleotides QEN71_RS00225: QEN71_RS00225 - rod shape-determining protein RodA, at 46,059 to 47,207 _RS00225 QEN71_RS00230: QEN71_RS00230 - penicillin-binding protein 2, at 47,218 to 49,611 _RS00230 QEN71_RS00235: QEN71_RS00235 - rod shape-determining protein MreD, at 49,740 to 50,252 _RS00235 QEN71_RS00240: QEN71_RS00240 - rod shape-determining protein MreC, at 50,249 to 51,349 _RS00240 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 47.220 kb on - strandat 47.220 kb on - strandat 47.220 kb on - strandat 49.677 kb on - strandat 49.847 kb on - strand, within QEN71_RS00235at 50.527 kb on - strand, within QEN71_RS00240at 50.527 kb on - strand, within QEN71_RS00240at 50.527 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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47,220 - +0.3
47,220 - -0.3
47,220 - -0.7
49,677 - -0.5
49,847 - QEN71_RS00235 0.21 -2.5
50,527 - QEN71_RS00240 0.25 +0.5
50,527 - QEN71_RS00240 0.25 -0.7
50,527 - QEN71_RS00240 0.25 -0.5
50,532 - QEN71_RS00240 0.26 -1.5
50,532 - QEN71_RS00240 0.26 +0.1
50,532 - QEN71_RS00240 0.26 -0.3
50,532 - QEN71_RS00240 0.26 -1.8
50,532 - QEN71_RS00240 0.26 -1.8

Or see this region's nucleotide sequence