Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS42190

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS42185 and QEN71_RS42190 are separated by 56 nucleotidesQEN71_RS42190 and QEN71_RS42195 are separated by 71 nucleotidesQEN71_RS42195 and QEN71_RS42200 overlap by 4 nucleotidesQEN71_RS42200 and QEN71_RS42205 are separated by 16 nucleotides QEN71_RS42185: QEN71_RS42185 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 520,924 to 522,273 _RS42185 QEN71_RS42190: QEN71_RS42190 - nitrogen fixation protein NifX, at 522,330 to 522,746 _RS42190 QEN71_RS42195: QEN71_RS42195 - CCE_0567 family metalloprotein, at 522,818 to 523,039 _RS42195 QEN71_RS42200: QEN71_RS42200 - ferredoxin III, nif-specific, at 523,036 to 523,338 _RS42200 QEN71_RS42205: QEN71_RS42205 - nitrogen fixation protein NifQ, at 523,355 to 523,927 _RS42205 Position (kb) 522 523Strain fitness (log2 ratio) -2 -1 0 1 2 3at 521.336 kb on - strand, within QEN71_RS42185at 521.336 kb on - strand, within QEN71_RS42185at 521.336 kb on - strand, within QEN71_RS42185at 521.410 kb on - strand, within QEN71_RS42185at 521.410 kb on - strand, within QEN71_RS42185at 521.414 kb on + strand, within QEN71_RS42185at 521.415 kb on - strand, within QEN71_RS42185at 521.450 kb on + strand, within QEN71_RS42185at 521.451 kb on - strand, within QEN71_RS42185at 521.451 kb on - strand, within QEN71_RS42185at 521.451 kb on - strand, within QEN71_RS42185at 521.451 kb on - strand, within QEN71_RS42185at 521.586 kb on + strand, within QEN71_RS42185at 521.586 kb on + strand, within QEN71_RS42185at 521.587 kb on - strand, within QEN71_RS42185at 521.587 kb on - strand, within QEN71_RS42185at 521.626 kb on - strand, within QEN71_RS42185at 521.786 kb on - strand, within QEN71_RS42185at 521.837 kb on - strand, within QEN71_RS42185at 521.966 kb on + strand, within QEN71_RS42185at 522.042 kb on + strand, within QEN71_RS42185at 522.172 kb on - strandat 522.172 kb on - strandat 522.209 kb on + strandat 522.209 kb on + strandat 522.209 kb on + strandat 522.209 kb on + strandat 522.209 kb on + strandat 522.210 kb on - strandat 522.210 kb on - strandat 522.293 kb on - strandat 522.401 kb on + strand, within QEN71_RS42190at 522.406 kb on - strand, within QEN71_RS42190at 522.406 kb on - strand, within QEN71_RS42190at 522.412 kb on + strand, within QEN71_RS42190at 522.412 kb on + strand, within QEN71_RS42190at 522.412 kb on + strand, within QEN71_RS42190at 522.413 kb on - strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.531 kb on + strand, within QEN71_RS42190at 522.709 kb on - strandat 522.709 kb on - strandat 522.713 kb on + strandat 522.714 kb on - strandat 522.733 kb on + strandat 522.733 kb on + strandat 522.734 kb on - strandat 522.734 kb on - strandat 523.061 kb on + strandat 523.178 kb on + strand, within QEN71_RS42200at 523.313 kb on - strandat 523.348 kb on + strandat 523.349 kb on - strandat 523.355 kb on - strandat 523.390 kb on - strandat 523.464 kb on + strand, within QEN71_RS42205at 523.464 kb on + strand, within QEN71_RS42205at 523.471 kb on + strand, within QEN71_RS42205at 523.617 kb on + strand, within QEN71_RS42205at 523.675 kb on + strand, within QEN71_RS42205at 523.675 kb on + strand, within QEN71_RS42205at 523.676 kb on - strand, within QEN71_RS42205at 523.676 kb on - strand, within QEN71_RS42205at 523.676 kb on - strand, within QEN71_RS42205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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521,336 - QEN71_RS42185 0.31 -0.0
521,336 - QEN71_RS42185 0.31 -1.5
521,336 - QEN71_RS42185 0.31 +0.0
521,410 - QEN71_RS42185 0.36 +0.2
521,410 - QEN71_RS42185 0.36 -0.7
521,414 + QEN71_RS42185 0.36 +0.0
521,415 - QEN71_RS42185 0.36 +1.3
521,450 + QEN71_RS42185 0.39 -0.5
521,451 - QEN71_RS42185 0.39 -0.3
521,451 - QEN71_RS42185 0.39 -0.4
521,451 - QEN71_RS42185 0.39 +0.4
521,451 - QEN71_RS42185 0.39 +1.2
521,586 + QEN71_RS42185 0.49 -0.2
521,586 + QEN71_RS42185 0.49 +0.3
521,587 - QEN71_RS42185 0.49 +0.3
521,587 - QEN71_RS42185 0.49 -1.3
521,626 - QEN71_RS42185 0.52 -0.2
521,786 - QEN71_RS42185 0.64 -0.5
521,837 - QEN71_RS42185 0.68 +0.2
521,966 + QEN71_RS42185 0.77 -0.2
522,042 + QEN71_RS42185 0.83 +0.6
522,172 - -2.0
522,172 - -0.3
522,209 + -0.1
522,209 + +1.1
522,209 + +3.1
522,209 + +0.6
522,209 + -2.4
522,210 - -0.5
522,210 - +0.2
522,293 - +0.1
522,401 + QEN71_RS42190 0.17 -0.7
522,406 - QEN71_RS42190 0.18 -1.2
522,406 - QEN71_RS42190 0.18 -0.1
522,412 + QEN71_RS42190 0.20 -1.4
522,412 + QEN71_RS42190 0.20 -0.8
522,412 + QEN71_RS42190 0.20 -0.6
522,413 - QEN71_RS42190 0.20 -1.0
522,428 + QEN71_RS42190 0.24 +0.4
522,428 + QEN71_RS42190 0.24 -0.6
522,428 + QEN71_RS42190 0.24 +0.2
522,428 + QEN71_RS42190 0.24 +1.1
522,428 + QEN71_RS42190 0.24 -1.8
522,428 + QEN71_RS42190 0.24 +0.2
522,429 - QEN71_RS42190 0.24 +0.6
522,429 - QEN71_RS42190 0.24 -1.0
522,429 - QEN71_RS42190 0.24 -0.2
522,429 - QEN71_RS42190 0.24 -0.5
522,531 + QEN71_RS42190 0.48 +0.6
522,709 - -1.6
522,709 - +0.2
522,713 + +0.2
522,714 - -0.6
522,733 + -0.1
522,733 + -0.9
522,734 - -1.2
522,734 - -0.9
523,061 + +0.1
523,178 + QEN71_RS42200 0.47 -1.0
523,313 - -1.3
523,348 + -1.2
523,349 - -0.3
523,355 - +1.4
523,390 - +0.8
523,464 + QEN71_RS42205 0.19 +1.5
523,464 + QEN71_RS42205 0.19 +1.1
523,471 + QEN71_RS42205 0.20 +0.8
523,617 + QEN71_RS42205 0.46 -0.9
523,675 + QEN71_RS42205 0.56 -2.5
523,675 + QEN71_RS42205 0.56 -1.4
523,676 - QEN71_RS42205 0.56 -0.7
523,676 - QEN71_RS42205 0.56 +1.0
523,676 - QEN71_RS42205 0.56 -0.2

Or see this region's nucleotide sequence