Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS41440

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS41435 and QEN71_RS41440 are separated by 30 nucleotidesQEN71_RS41440 and QEN71_RS41445 overlap by 4 nucleotides QEN71_RS41435: QEN71_RS41435 - porin, at 366,862 to 367,962 _RS41435 QEN71_RS41440: QEN71_RS41440 - pyruvate kinase, at 367,993 to 369,468 _RS41440 QEN71_RS41445: QEN71_RS41445 - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, at 369,465 to 371,090 _RS41445 Position (kb) 367 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 367.185 kb on + strand, within QEN71_RS41435at 367.185 kb on + strand, within QEN71_RS41435at 367.185 kb on + strand, within QEN71_RS41435at 367.186 kb on - strand, within QEN71_RS41435at 367.186 kb on - strand, within QEN71_RS41435at 367.186 kb on - strand, within QEN71_RS41435at 367.240 kb on + strand, within QEN71_RS41435at 367.241 kb on - strand, within QEN71_RS41435at 367.241 kb on - strand, within QEN71_RS41435at 367.252 kb on + strand, within QEN71_RS41435at 367.252 kb on + strand, within QEN71_RS41435at 367.252 kb on + strand, within QEN71_RS41435at 367.252 kb on + strand, within QEN71_RS41435at 367.253 kb on - strand, within QEN71_RS41435at 367.253 kb on - strand, within QEN71_RS41435at 367.253 kb on - strand, within QEN71_RS41435at 367.253 kb on - strand, within QEN71_RS41435at 367.282 kb on + strand, within QEN71_RS41435at 367.282 kb on + strand, within QEN71_RS41435at 367.282 kb on + strand, within QEN71_RS41435at 367.438 kb on + strand, within QEN71_RS41435at 367.438 kb on + strand, within QEN71_RS41435at 367.438 kb on + strand, within QEN71_RS41435at 367.438 kb on + strand, within QEN71_RS41435at 367.439 kb on - strand, within QEN71_RS41435at 367.501 kb on + strand, within QEN71_RS41435at 367.501 kb on + strand, within QEN71_RS41435at 367.502 kb on - strand, within QEN71_RS41435at 367.502 kb on - strand, within QEN71_RS41435at 367.502 kb on - strand, within QEN71_RS41435at 367.570 kb on + strand, within QEN71_RS41435at 367.579 kb on + strand, within QEN71_RS41435at 367.579 kb on + strand, within QEN71_RS41435at 367.579 kb on + strand, within QEN71_RS41435at 367.579 kb on + strand, within QEN71_RS41435at 367.579 kb on + strand, within QEN71_RS41435at 367.579 kb on + strand, within QEN71_RS41435at 367.580 kb on - strand, within QEN71_RS41435at 367.580 kb on - strand, within QEN71_RS41435at 367.580 kb on - strand, within QEN71_RS41435at 367.580 kb on - strand, within QEN71_RS41435at 367.580 kb on - strand, within QEN71_RS41435at 367.630 kb on + strand, within QEN71_RS41435at 367.630 kb on + strand, within QEN71_RS41435at 367.630 kb on + strand, within QEN71_RS41435at 367.631 kb on - strand, within QEN71_RS41435at 367.672 kb on - strand, within QEN71_RS41435at 367.694 kb on - strand, within QEN71_RS41435at 367.729 kb on + strand, within QEN71_RS41435at 367.735 kb on + strand, within QEN71_RS41435at 367.736 kb on - strand, within QEN71_RS41435at 367.810 kb on + strand, within QEN71_RS41435at 367.810 kb on + strand, within QEN71_RS41435at 367.810 kb on + strand, within QEN71_RS41435at 367.811 kb on - strand, within QEN71_RS41435at 367.811 kb on - strand, within QEN71_RS41435at 367.811 kb on - strand, within QEN71_RS41435at 367.811 kb on - strand, within QEN71_RS41435at 367.853 kb on - strandat 367.888 kb on + strandat 367.888 kb on + strandat 367.888 kb on + strandat 367.888 kb on + strandat 367.889 kb on - strandat 367.889 kb on - strandat 367.889 kb on - strandat 367.889 kb on - strandat 367.961 kb on - strandat 368.019 kb on - strandat 368.233 kb on - strand, within QEN71_RS41440at 368.400 kb on + strand, within QEN71_RS41440at 368.400 kb on + strand, within QEN71_RS41440at 368.401 kb on - strand, within QEN71_RS41440at 368.425 kb on - strand, within QEN71_RS41440at 368.448 kb on + strand, within QEN71_RS41440at 368.449 kb on - strand, within QEN71_RS41440at 368.449 kb on - strand, within QEN71_RS41440at 368.449 kb on - strand, within QEN71_RS41440at 368.449 kb on - strand, within QEN71_RS41440at 368.449 kb on - strand, within QEN71_RS41440at 368.847 kb on + strand, within QEN71_RS41440at 368.848 kb on - strand, within QEN71_RS41440at 368.890 kb on + strand, within QEN71_RS41440at 368.891 kb on - strand, within QEN71_RS41440at 368.891 kb on - strand, within QEN71_RS41440at 369.078 kb on + strand, within QEN71_RS41440at 369.118 kb on + strand, within QEN71_RS41440at 369.118 kb on + strand, within QEN71_RS41440at 369.118 kb on + strand, within QEN71_RS41440at 369.119 kb on - strand, within QEN71_RS41440at 369.119 kb on - strand, within QEN71_RS41440at 369.119 kb on - strand, within QEN71_RS41440at 369.119 kb on - strand, within QEN71_RS41440at 369.119 kb on - strand, within QEN71_RS41440at 369.119 kb on - strand, within QEN71_RS41440at 369.197 kb on + strand, within QEN71_RS41440at 369.197 kb on + strand, within QEN71_RS41440at 369.197 kb on + strand, within QEN71_RS41440at 369.197 kb on + strand, within QEN71_RS41440at 369.197 kb on + strand, within QEN71_RS41440at 369.197 kb on + strand, within QEN71_RS41440at 369.198 kb on - strand, within QEN71_RS41440at 369.282 kb on + strand, within QEN71_RS41440at 369.426 kb on + strandat 369.426 kb on + strandat 369.616 kb on + strandat 369.616 kb on + strandat 369.616 kb on + strandat 369.616 kb on + strandat 369.617 kb on - strandat 369.617 kb on - strandat 369.617 kb on - strandat 369.897 kb on + strand, within QEN71_RS41445at 369.897 kb on + strand, within QEN71_RS41445at 370.074 kb on - strand, within QEN71_RS41445at 370.079 kb on + strand, within QEN71_RS41445at 370.083 kb on - strand, within QEN71_RS41445at 370.180 kb on + strand, within QEN71_RS41445at 370.180 kb on + strand, within QEN71_RS41445at 370.180 kb on + strand, within QEN71_RS41445at 370.180 kb on + strand, within QEN71_RS41445at 370.180 kb on + strand, within QEN71_RS41445at 370.181 kb on - strand, within QEN71_RS41445at 370.182 kb on + strand, within QEN71_RS41445at 370.182 kb on + strand, within QEN71_RS41445at 370.182 kb on + strand, within QEN71_RS41445at 370.182 kb on + strand, within QEN71_RS41445at 370.183 kb on - strand, within QEN71_RS41445at 370.183 kb on - strand, within QEN71_RS41445at 370.183 kb on - strand, within QEN71_RS41445at 370.348 kb on + strand, within QEN71_RS41445at 370.373 kb on + strand, within QEN71_RS41445at 370.373 kb on + strand, within QEN71_RS41445at 370.374 kb on - strand, within QEN71_RS41445at 370.374 kb on - strand, within QEN71_RS41445at 370.424 kb on + strand, within QEN71_RS41445at 370.424 kb on + strand, within QEN71_RS41445at 370.457 kb on + strand, within QEN71_RS41445

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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367,185 + QEN71_RS41435 0.29 +1.5
367,185 + QEN71_RS41435 0.29 +0.4
367,185 + QEN71_RS41435 0.29 -0.0
367,186 - QEN71_RS41435 0.29 +0.2
367,186 - QEN71_RS41435 0.29 -0.7
367,186 - QEN71_RS41435 0.29 -0.2
367,240 + QEN71_RS41435 0.34 -0.7
367,241 - QEN71_RS41435 0.34 +0.5
367,241 - QEN71_RS41435 0.34 -0.3
367,252 + QEN71_RS41435 0.35 -1.0
367,252 + QEN71_RS41435 0.35 +0.7
367,252 + QEN71_RS41435 0.35 +0.3
367,252 + QEN71_RS41435 0.35 +0.1
367,253 - QEN71_RS41435 0.36 +0.3
367,253 - QEN71_RS41435 0.36 +0.4
367,253 - QEN71_RS41435 0.36 -0.9
367,253 - QEN71_RS41435 0.36 -0.6
367,282 + QEN71_RS41435 0.38 +0.8
367,282 + QEN71_RS41435 0.38 -2.1
367,282 + QEN71_RS41435 0.38 -0.3
367,438 + QEN71_RS41435 0.52 +0.6
367,438 + QEN71_RS41435 0.52 -0.5
367,438 + QEN71_RS41435 0.52 -0.8
367,438 + QEN71_RS41435 0.52 +0.7
367,439 - QEN71_RS41435 0.52 -0.7
367,501 + QEN71_RS41435 0.58 +0.9
367,501 + QEN71_RS41435 0.58 +0.1
367,502 - QEN71_RS41435 0.58 +0.1
367,502 - QEN71_RS41435 0.58 +0.3
367,502 - QEN71_RS41435 0.58 -1.7
367,570 + QEN71_RS41435 0.64 +1.4
367,579 + QEN71_RS41435 0.65 +0.1
367,579 + QEN71_RS41435 0.65 +0.1
367,579 + QEN71_RS41435 0.65 +0.5
367,579 + QEN71_RS41435 0.65 +0.0
367,579 + QEN71_RS41435 0.65 +0.5
367,579 + QEN71_RS41435 0.65 +0.4
367,580 - QEN71_RS41435 0.65 -0.6
367,580 - QEN71_RS41435 0.65 -0.1
367,580 - QEN71_RS41435 0.65 -0.2
367,580 - QEN71_RS41435 0.65 -2.3
367,580 - QEN71_RS41435 0.65 +0.2
367,630 + QEN71_RS41435 0.70 +0.2
367,630 + QEN71_RS41435 0.70 -1.1
367,630 + QEN71_RS41435 0.70 -0.2
367,631 - QEN71_RS41435 0.70 -0.3
367,672 - QEN71_RS41435 0.74 -0.5
367,694 - QEN71_RS41435 0.76 -0.6
367,729 + QEN71_RS41435 0.79 -0.3
367,735 + QEN71_RS41435 0.79 -0.4
367,736 - QEN71_RS41435 0.79 -0.2
367,810 + QEN71_RS41435 0.86 -2.7
367,810 + QEN71_RS41435 0.86 -0.5
367,810 + QEN71_RS41435 0.86 -0.6
367,811 - QEN71_RS41435 0.86 -0.7
367,811 - QEN71_RS41435 0.86 -0.1
367,811 - QEN71_RS41435 0.86 -0.3
367,811 - QEN71_RS41435 0.86 +0.1
367,853 - -0.4
367,888 + +0.3
367,888 + -0.1
367,888 + +0.2
367,888 + -0.4
367,889 - +1.0
367,889 - -1.0
367,889 - -0.8
367,889 - -0.2
367,961 - -0.2
368,019 - -1.0
368,233 - QEN71_RS41440 0.16 +0.3
368,400 + QEN71_RS41440 0.28 -0.1
368,400 + QEN71_RS41440 0.28 -0.5
368,401 - QEN71_RS41440 0.28 -1.3
368,425 - QEN71_RS41440 0.29 -0.7
368,448 + QEN71_RS41440 0.31 +0.5
368,449 - QEN71_RS41440 0.31 -1.5
368,449 - QEN71_RS41440 0.31 +0.3
368,449 - QEN71_RS41440 0.31 -0.3
368,449 - QEN71_RS41440 0.31 +0.0
368,449 - QEN71_RS41440 0.31 +0.3
368,847 + QEN71_RS41440 0.58 +0.3
368,848 - QEN71_RS41440 0.58 +0.3
368,890 + QEN71_RS41440 0.61 +0.1
368,891 - QEN71_RS41440 0.61 -0.2
368,891 - QEN71_RS41440 0.61 -0.7
369,078 + QEN71_RS41440 0.74 +0.2
369,118 + QEN71_RS41440 0.76 -0.7
369,118 + QEN71_RS41440 0.76 -1.4
369,118 + QEN71_RS41440 0.76 +1.4
369,119 - QEN71_RS41440 0.76 -0.1
369,119 - QEN71_RS41440 0.76 +2.0
369,119 - QEN71_RS41440 0.76 +0.3
369,119 - QEN71_RS41440 0.76 -0.9
369,119 - QEN71_RS41440 0.76 +1.6
369,119 - QEN71_RS41440 0.76 -0.6
369,197 + QEN71_RS41440 0.82 -0.5
369,197 + QEN71_RS41440 0.82 -0.3
369,197 + QEN71_RS41440 0.82 -0.3
369,197 + QEN71_RS41440 0.82 +0.8
369,197 + QEN71_RS41440 0.82 -0.0
369,197 + QEN71_RS41440 0.82 -0.3
369,198 - QEN71_RS41440 0.82 -0.6
369,282 + QEN71_RS41440 0.87 +0.4
369,426 + -0.8
369,426 + +0.5
369,616 + -0.7
369,616 + -0.5
369,616 + +0.6
369,616 + +1.1
369,617 - +0.0
369,617 - -0.0
369,617 - -0.2
369,897 + QEN71_RS41445 0.27 -0.9
369,897 + QEN71_RS41445 0.27 +0.4
370,074 - QEN71_RS41445 0.37 -0.2
370,079 + QEN71_RS41445 0.38 -0.4
370,083 - QEN71_RS41445 0.38 -0.5
370,180 + QEN71_RS41445 0.44 -0.0
370,180 + QEN71_RS41445 0.44 -0.2
370,180 + QEN71_RS41445 0.44 -1.0
370,180 + QEN71_RS41445 0.44 -0.6
370,180 + QEN71_RS41445 0.44 -1.0
370,181 - QEN71_RS41445 0.44 -0.7
370,182 + QEN71_RS41445 0.44 -0.2
370,182 + QEN71_RS41445 0.44 -2.1
370,182 + QEN71_RS41445 0.44 -0.3
370,182 + QEN71_RS41445 0.44 -0.6
370,183 - QEN71_RS41445 0.44 -0.1
370,183 - QEN71_RS41445 0.44 -1.0
370,183 - QEN71_RS41445 0.44 -0.5
370,348 + QEN71_RS41445 0.54 -0.9
370,373 + QEN71_RS41445 0.56 +1.2
370,373 + QEN71_RS41445 0.56 -0.5
370,374 - QEN71_RS41445 0.56 +1.4
370,374 - QEN71_RS41445 0.56 -0.5
370,424 + QEN71_RS41445 0.59 -2.3
370,424 + QEN71_RS41445 0.59 +0.6
370,457 + QEN71_RS41445 0.61 -0.5

Or see this region's nucleotide sequence