Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS41380

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS41375 and QEN71_RS41380 are separated by 118 nucleotidesQEN71_RS41380 and QEN71_RS41385 are separated by 53 nucleotides QEN71_RS41375: QEN71_RS41375 - APC family permease, at 351,937 to 353,571 _RS41375 QEN71_RS41380: QEN71_RS41380 - GntR family transcriptional regulator, at 353,690 to 354,595 _RS41380 QEN71_RS41385: QEN71_RS41385 - aconitate hydratase AcnA, at 354,649 to 357,273 _RS41385 Position (kb) 353 354 355Strain fitness (log2 ratio) -2 -1 0 1 2at 352.825 kb on + strand, within QEN71_RS41375at 352.826 kb on - strand, within QEN71_RS41375at 352.826 kb on - strand, within QEN71_RS41375at 352.867 kb on + strand, within QEN71_RS41375at 352.867 kb on + strand, within QEN71_RS41375at 352.868 kb on - strand, within QEN71_RS41375at 352.868 kb on - strand, within QEN71_RS41375at 352.868 kb on - strand, within QEN71_RS41375at 352.868 kb on - strand, within QEN71_RS41375at 352.868 kb on - strand, within QEN71_RS41375at 352.894 kb on + strand, within QEN71_RS41375at 352.894 kb on + strand, within QEN71_RS41375at 352.894 kb on + strand, within QEN71_RS41375at 352.894 kb on + strand, within QEN71_RS41375at 352.894 kb on + strand, within QEN71_RS41375at 352.894 kb on + strand, within QEN71_RS41375at 352.894 kb on + strand, within QEN71_RS41375at 352.894 kb on + strand, within QEN71_RS41375at 352.894 kb on + strand, within QEN71_RS41375at 352.895 kb on - strand, within QEN71_RS41375at 352.895 kb on - strand, within QEN71_RS41375at 352.895 kb on - strand, within QEN71_RS41375at 352.895 kb on - strand, within QEN71_RS41375at 352.951 kb on + strand, within QEN71_RS41375at 352.951 kb on + strand, within QEN71_RS41375at 352.952 kb on - strand, within QEN71_RS41375at 352.952 kb on - strand, within QEN71_RS41375at 352.952 kb on - strand, within QEN71_RS41375at 353.004 kb on + strand, within QEN71_RS41375at 353.004 kb on + strand, within QEN71_RS41375at 353.005 kb on - strand, within QEN71_RS41375at 353.044 kb on - strand, within QEN71_RS41375at 353.061 kb on + strand, within QEN71_RS41375at 353.061 kb on + strand, within QEN71_RS41375at 353.061 kb on + strand, within QEN71_RS41375at 353.061 kb on + strand, within QEN71_RS41375at 353.062 kb on - strand, within QEN71_RS41375at 353.062 kb on - strand, within QEN71_RS41375at 353.062 kb on - strand, within QEN71_RS41375at 353.062 kb on - strand, within QEN71_RS41375at 353.063 kb on + strand, within QEN71_RS41375at 353.063 kb on + strand, within QEN71_RS41375at 353.063 kb on + strand, within QEN71_RS41375at 353.064 kb on - strand, within QEN71_RS41375at 353.194 kb on + strand, within QEN71_RS41375at 353.194 kb on + strand, within QEN71_RS41375at 353.195 kb on - strand, within QEN71_RS41375at 353.195 kb on - strand, within QEN71_RS41375at 353.257 kb on + strand, within QEN71_RS41375at 353.257 kb on + strand, within QEN71_RS41375at 353.257 kb on + strand, within QEN71_RS41375at 353.257 kb on + strand, within QEN71_RS41375at 353.257 kb on + strand, within QEN71_RS41375at 353.257 kb on + strand, within QEN71_RS41375at 353.263 kb on + strand, within QEN71_RS41375at 353.263 kb on + strand, within QEN71_RS41375at 353.263 kb on + strand, within QEN71_RS41375at 353.264 kb on - strand, within QEN71_RS41375at 353.264 kb on - strand, within QEN71_RS41375at 353.264 kb on - strand, within QEN71_RS41375at 353.264 kb on - strand, within QEN71_RS41375at 353.264 kb on - strand, within QEN71_RS41375at 353.264 kb on - strand, within QEN71_RS41375at 353.264 kb on - strand, within QEN71_RS41375at 353.264 kb on - strand, within QEN71_RS41375at 353.266 kb on + strand, within QEN71_RS41375at 353.267 kb on - strand, within QEN71_RS41375at 353.298 kb on + strand, within QEN71_RS41375at 353.324 kb on + strand, within QEN71_RS41375at 353.325 kb on - strand, within QEN71_RS41375at 353.327 kb on + strand, within QEN71_RS41375at 353.327 kb on + strand, within QEN71_RS41375at 353.328 kb on - strand, within QEN71_RS41375at 353.333 kb on - strand, within QEN71_RS41375at 353.333 kb on - strand, within QEN71_RS41375at 353.333 kb on - strand, within QEN71_RS41375at 353.360 kb on + strand, within QEN71_RS41375at 353.427 kb on - strandat 353.482 kb on + strandat 353.483 kb on - strandat 353.483 kb on - strandat 353.570 kb on - strandat 353.658 kb on + strandat 353.658 kb on + strandat 353.658 kb on + strandat 353.674 kb on + strandat 353.674 kb on + strandat 353.674 kb on + strandat 353.674 kb on + strandat 353.674 kb on + strandat 353.675 kb on - strandat 353.675 kb on - strandat 353.675 kb on - strandat 353.675 kb on - strandat 353.675 kb on - strandat 353.675 kb on - strandat 353.725 kb on + strandat 353.746 kb on + strandat 353.747 kb on - strandat 353.747 kb on - strandat 353.844 kb on + strand, within QEN71_RS41380at 353.845 kb on - strand, within QEN71_RS41380at 353.871 kb on + strand, within QEN71_RS41380at 354.181 kb on + strand, within QEN71_RS41380at 354.182 kb on - strand, within QEN71_RS41380at 354.250 kb on - strand, within QEN71_RS41380at 354.250 kb on - strand, within QEN71_RS41380at 354.324 kb on + strand, within QEN71_RS41380at 354.324 kb on + strand, within QEN71_RS41380at 354.325 kb on - strand, within QEN71_RS41380at 354.336 kb on - strand, within QEN71_RS41380at 354.452 kb on + strand, within QEN71_RS41380at 354.452 kb on + strand, within QEN71_RS41380at 354.452 kb on + strand, within QEN71_RS41380at 354.452 kb on + strand, within QEN71_RS41380at 354.452 kb on + strand, within QEN71_RS41380at 354.452 kb on + strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.453 kb on - strand, within QEN71_RS41380at 354.650 kb on + strandat 354.650 kb on + strandat 354.651 kb on - strandat 354.651 kb on - strandat 354.683 kb on - strandat 354.683 kb on - strandat 354.683 kb on - strandat 354.774 kb on + strandat 354.774 kb on + strandat 354.846 kb on + strandat 354.846 kb on + strandat 354.847 kb on - strandat 354.847 kb on - strandat 354.847 kb on - strandat 355.126 kb on - strand, within QEN71_RS41385at 355.167 kb on + strand, within QEN71_RS41385at 355.167 kb on + strand, within QEN71_RS41385at 355.167 kb on + strand, within QEN71_RS41385at 355.167 kb on + strand, within QEN71_RS41385at 355.167 kb on + strand, within QEN71_RS41385at 355.168 kb on - strand, within QEN71_RS41385at 355.168 kb on - strand, within QEN71_RS41385at 355.168 kb on - strand, within QEN71_RS41385at 355.175 kb on + strand, within QEN71_RS41385at 355.175 kb on + strand, within QEN71_RS41385at 355.176 kb on - strand, within QEN71_RS41385at 355.176 kb on - strand, within QEN71_RS41385at 355.176 kb on - strand, within QEN71_RS41385at 355.176 kb on - strand, within QEN71_RS41385at 355.190 kb on - strand, within QEN71_RS41385at 355.277 kb on + strand, within QEN71_RS41385at 355.277 kb on + strand, within QEN71_RS41385at 355.277 kb on + strand, within QEN71_RS41385at 355.277 kb on + strand, within QEN71_RS41385at 355.277 kb on + strand, within QEN71_RS41385at 355.277 kb on + strand, within QEN71_RS41385at 355.277 kb on + strand, within QEN71_RS41385at 355.277 kb on + strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.278 kb on - strand, within QEN71_RS41385at 355.288 kb on - strand, within QEN71_RS41385at 355.353 kb on - strand, within QEN71_RS41385at 355.361 kb on + strand, within QEN71_RS41385at 355.361 kb on + strand, within QEN71_RS41385at 355.362 kb on - strand, within QEN71_RS41385at 355.362 kb on - strand, within QEN71_RS41385at 355.362 kb on - strand, within QEN71_RS41385at 355.583 kb on + strand, within QEN71_RS41385at 355.584 kb on - strand, within QEN71_RS41385

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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352,825 + QEN71_RS41375 0.54 +1.4
352,826 - QEN71_RS41375 0.54 -1.1
352,826 - QEN71_RS41375 0.54 -1.0
352,867 + QEN71_RS41375 0.57 -1.3
352,867 + QEN71_RS41375 0.57 -0.1
352,868 - QEN71_RS41375 0.57 -0.6
352,868 - QEN71_RS41375 0.57 +0.1
352,868 - QEN71_RS41375 0.57 +1.5
352,868 - QEN71_RS41375 0.57 -0.3
352,868 - QEN71_RS41375 0.57 -0.2
352,894 + QEN71_RS41375 0.59 +0.1
352,894 + QEN71_RS41375 0.59 +1.0
352,894 + QEN71_RS41375 0.59 -0.5
352,894 + QEN71_RS41375 0.59 -1.0
352,894 + QEN71_RS41375 0.59 -1.5
352,894 + QEN71_RS41375 0.59 -0.4
352,894 + QEN71_RS41375 0.59 -1.2
352,894 + QEN71_RS41375 0.59 -0.8
352,894 + QEN71_RS41375 0.59 -0.2
352,895 - QEN71_RS41375 0.59 +0.1
352,895 - QEN71_RS41375 0.59 -1.0
352,895 - QEN71_RS41375 0.59 -0.1
352,895 - QEN71_RS41375 0.59 -1.3
352,951 + QEN71_RS41375 0.62 +0.3
352,951 + QEN71_RS41375 0.62 -0.2
352,952 - QEN71_RS41375 0.62 +0.2
352,952 - QEN71_RS41375 0.62 -0.5
352,952 - QEN71_RS41375 0.62 -0.0
353,004 + QEN71_RS41375 0.65 -0.3
353,004 + QEN71_RS41375 0.65 -0.3
353,005 - QEN71_RS41375 0.65 -0.8
353,044 - QEN71_RS41375 0.68 +0.2
353,061 + QEN71_RS41375 0.69 +0.0
353,061 + QEN71_RS41375 0.69 -0.2
353,061 + QEN71_RS41375 0.69 -0.3
353,061 + QEN71_RS41375 0.69 -1.2
353,062 - QEN71_RS41375 0.69 +0.6
353,062 - QEN71_RS41375 0.69 -0.3
353,062 - QEN71_RS41375 0.69 +0.2
353,062 - QEN71_RS41375 0.69 -1.3
353,063 + QEN71_RS41375 0.69 -0.1
353,063 + QEN71_RS41375 0.69 -0.1
353,063 + QEN71_RS41375 0.69 -0.8
353,064 - QEN71_RS41375 0.69 +0.1
353,194 + QEN71_RS41375 0.77 -0.6
353,194 + QEN71_RS41375 0.77 +0.8
353,195 - QEN71_RS41375 0.77 -0.7
353,195 - QEN71_RS41375 0.77 -0.6
353,257 + QEN71_RS41375 0.81 -0.6
353,257 + QEN71_RS41375 0.81 +0.5
353,257 + QEN71_RS41375 0.81 -0.8
353,257 + QEN71_RS41375 0.81 +0.6
353,257 + QEN71_RS41375 0.81 -0.8
353,257 + QEN71_RS41375 0.81 -0.2
353,263 + QEN71_RS41375 0.81 -1.4
353,263 + QEN71_RS41375 0.81 -0.8
353,263 + QEN71_RS41375 0.81 -1.2
353,264 - QEN71_RS41375 0.81 -0.8
353,264 - QEN71_RS41375 0.81 -0.6
353,264 - QEN71_RS41375 0.81 -0.5
353,264 - QEN71_RS41375 0.81 -1.1
353,264 - QEN71_RS41375 0.81 +0.3
353,264 - QEN71_RS41375 0.81 -0.1
353,264 - QEN71_RS41375 0.81 -0.9
353,264 - QEN71_RS41375 0.81 -0.2
353,266 + QEN71_RS41375 0.81 -0.1
353,267 - QEN71_RS41375 0.81 +0.2
353,298 + QEN71_RS41375 0.83 -0.2
353,324 + QEN71_RS41375 0.85 -0.2
353,325 - QEN71_RS41375 0.85 -0.6
353,327 + QEN71_RS41375 0.85 +0.1
353,327 + QEN71_RS41375 0.85 -0.3
353,328 - QEN71_RS41375 0.85 -0.9
353,333 - QEN71_RS41375 0.85 -0.5
353,333 - QEN71_RS41375 0.85 -0.1
353,333 - QEN71_RS41375 0.85 -0.0
353,360 + QEN71_RS41375 0.87 -0.4
353,427 - +1.5
353,482 + +0.2
353,483 - -0.2
353,483 - -0.5
353,570 - -0.5
353,658 + -0.3
353,658 + +0.5
353,658 + -1.2
353,674 + -0.3
353,674 + -0.5
353,674 + -0.9
353,674 + +0.0
353,674 + -1.0
353,675 - +0.2
353,675 - +0.1
353,675 - -1.2
353,675 - +1.0
353,675 - +0.3
353,675 - +0.1
353,725 + +1.4
353,746 + -0.0
353,747 - +0.7
353,747 - -0.2
353,844 + QEN71_RS41380 0.17 +0.8
353,845 - QEN71_RS41380 0.17 +1.5
353,871 + QEN71_RS41380 0.20 -2.0
354,181 + QEN71_RS41380 0.54 +0.6
354,182 - QEN71_RS41380 0.54 -0.2
354,250 - QEN71_RS41380 0.62 -1.0
354,250 - QEN71_RS41380 0.62 +0.5
354,324 + QEN71_RS41380 0.70 +1.8
354,324 + QEN71_RS41380 0.70 -1.1
354,325 - QEN71_RS41380 0.70 +0.9
354,336 - QEN71_RS41380 0.71 +1.0
354,452 + QEN71_RS41380 0.84 -1.6
354,452 + QEN71_RS41380 0.84 -0.2
354,452 + QEN71_RS41380 0.84 +0.0
354,452 + QEN71_RS41380 0.84 +2.4
354,452 + QEN71_RS41380 0.84 -2.4
354,452 + QEN71_RS41380 0.84 -1.0
354,453 - QEN71_RS41380 0.84 +1.1
354,453 - QEN71_RS41380 0.84 -0.5
354,453 - QEN71_RS41380 0.84 +0.0
354,453 - QEN71_RS41380 0.84 -0.2
354,453 - QEN71_RS41380 0.84 +1.8
354,453 - QEN71_RS41380 0.84 +0.2
354,453 - QEN71_RS41380 0.84 -1.6
354,453 - QEN71_RS41380 0.84 -1.8
354,453 - QEN71_RS41380 0.84 -0.0
354,453 - QEN71_RS41380 0.84 -1.1
354,453 - QEN71_RS41380 0.84 +0.1
354,650 + -1.2
354,650 + +0.2
354,651 - +0.8
354,651 - -2.5
354,683 - -0.2
354,683 - +0.2
354,683 - -0.8
354,774 + +0.4
354,774 + -1.2
354,846 + +0.3
354,846 + +1.8
354,847 - +0.0
354,847 - +1.1
354,847 - -0.0
355,126 - QEN71_RS41385 0.18 +0.5
355,167 + QEN71_RS41385 0.20 -0.1
355,167 + QEN71_RS41385 0.20 +1.0
355,167 + QEN71_RS41385 0.20 +0.4
355,167 + QEN71_RS41385 0.20 +0.7
355,167 + QEN71_RS41385 0.20 +0.8
355,168 - QEN71_RS41385 0.20 +0.0
355,168 - QEN71_RS41385 0.20 -0.8
355,168 - QEN71_RS41385 0.20 +1.2
355,175 + QEN71_RS41385 0.20 -0.2
355,175 + QEN71_RS41385 0.20 +0.2
355,176 - QEN71_RS41385 0.20 +0.8
355,176 - QEN71_RS41385 0.20 +0.3
355,176 - QEN71_RS41385 0.20 +0.2
355,176 - QEN71_RS41385 0.20 +0.8
355,190 - QEN71_RS41385 0.21 -1.2
355,277 + QEN71_RS41385 0.24 -0.8
355,277 + QEN71_RS41385 0.24 -0.9
355,277 + QEN71_RS41385 0.24 +0.3
355,277 + QEN71_RS41385 0.24 -0.3
355,277 + QEN71_RS41385 0.24 -0.2
355,277 + QEN71_RS41385 0.24 -0.2
355,277 + QEN71_RS41385 0.24 +0.3
355,277 + QEN71_RS41385 0.24 -0.6
355,278 - QEN71_RS41385 0.24 +1.0
355,278 - QEN71_RS41385 0.24 -0.6
355,278 - QEN71_RS41385 0.24 -0.5
355,278 - QEN71_RS41385 0.24 -1.5
355,278 - QEN71_RS41385 0.24 +0.8
355,278 - QEN71_RS41385 0.24 -0.6
355,278 - QEN71_RS41385 0.24 -0.1
355,278 - QEN71_RS41385 0.24 +0.5
355,278 - QEN71_RS41385 0.24 -0.4
355,278 - QEN71_RS41385 0.24 -0.2
355,278 - QEN71_RS41385 0.24 -1.2
355,278 - QEN71_RS41385 0.24 +0.0
355,278 - QEN71_RS41385 0.24 +0.4
355,278 - QEN71_RS41385 0.24 +0.5
355,288 - QEN71_RS41385 0.24 +0.6
355,353 - QEN71_RS41385 0.27 -0.6
355,361 + QEN71_RS41385 0.27 +0.1
355,361 + QEN71_RS41385 0.27 +0.2
355,362 - QEN71_RS41385 0.27 -0.0
355,362 - QEN71_RS41385 0.27 -1.3
355,362 - QEN71_RS41385 0.27 +1.1
355,583 + QEN71_RS41385 0.36 -0.8
355,584 - QEN71_RS41385 0.36 -0.2

Or see this region's nucleotide sequence