Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39000

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38995 and QEN71_RS39000 are separated by 68 nucleotidesQEN71_RS39000 and QEN71_RS39005 are separated by 6 nucleotides QEN71_RS38995: QEN71_RS38995 - pyridoxamine 5'-phosphate oxidase family protein, at 2,125,256 to 2,127,328 _RS38995 QEN71_RS39000: QEN71_RS39000 - LysR family transcriptional regulator, at 2,127,397 to 2,128,302 _RS39000 QEN71_RS39005: QEN71_RS39005 - ATP-binding protein, at 2,128,309 to 2,130,081 _RS39005 Position (kb) 2127 2128 2129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2126.420 kb on + strand, within QEN71_RS38995at 2126.420 kb on + strand, within QEN71_RS38995at 2126.420 kb on + strand, within QEN71_RS38995at 2126.420 kb on + strand, within QEN71_RS38995at 2126.421 kb on - strand, within QEN71_RS38995at 2126.421 kb on - strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.422 kb on + strand, within QEN71_RS38995at 2126.423 kb on - strand, within QEN71_RS38995at 2126.423 kb on - strand, within QEN71_RS38995at 2126.423 kb on - strand, within QEN71_RS38995at 2126.466 kb on + strand, within QEN71_RS38995at 2126.645 kb on + strand, within QEN71_RS38995at 2126.888 kb on + strand, within QEN71_RS38995at 2126.888 kb on + strand, within QEN71_RS38995at 2126.888 kb on + strand, within QEN71_RS38995at 2126.888 kb on + strand, within QEN71_RS38995at 2126.888 kb on + strand, within QEN71_RS38995at 2126.889 kb on - strand, within QEN71_RS38995at 2126.889 kb on - strand, within QEN71_RS38995at 2126.889 kb on - strand, within QEN71_RS38995at 2126.889 kb on - strand, within QEN71_RS38995at 2126.889 kb on - strand, within QEN71_RS38995at 2126.889 kb on - strand, within QEN71_RS38995at 2126.889 kb on - strand, within QEN71_RS38995at 2126.924 kb on + strand, within QEN71_RS38995at 2126.925 kb on - strand, within QEN71_RS38995at 2127.219 kb on - strandat 2127.219 kb on - strandat 2127.363 kb on + strandat 2127.364 kb on - strandat 2127.364 kb on - strandat 2127.712 kb on + strand, within QEN71_RS39000at 2127.712 kb on + strand, within QEN71_RS39000at 2127.712 kb on + strand, within QEN71_RS39000at 2127.712 kb on + strand, within QEN71_RS39000at 2127.713 kb on - strand, within QEN71_RS39000at 2127.713 kb on - strand, within QEN71_RS39000at 2127.713 kb on - strand, within QEN71_RS39000at 2127.713 kb on - strand, within QEN71_RS39000at 2127.713 kb on - strand, within QEN71_RS39000at 2127.713 kb on - strand, within QEN71_RS39000at 2127.713 kb on - strand, within QEN71_RS39000at 2127.737 kb on - strand, within QEN71_RS39000at 2127.873 kb on + strand, within QEN71_RS39000at 2127.873 kb on + strand, within QEN71_RS39000at 2127.874 kb on - strand, within QEN71_RS39000at 2127.874 kb on - strand, within QEN71_RS39000at 2127.874 kb on - strand, within QEN71_RS39000at 2127.874 kb on - strand, within QEN71_RS39000at 2127.908 kb on - strand, within QEN71_RS39000at 2128.121 kb on - strand, within QEN71_RS39000at 2128.121 kb on - strand, within QEN71_RS39000at 2128.121 kb on - strand, within QEN71_RS39000at 2128.300 kb on + strandat 2128.311 kb on - strandat 2128.607 kb on + strand, within QEN71_RS39005at 2128.608 kb on - strand, within QEN71_RS39005at 2128.608 kb on - strand, within QEN71_RS39005at 2129.031 kb on + strand, within QEN71_RS39005at 2129.033 kb on + strand, within QEN71_RS39005at 2129.034 kb on - strand, within QEN71_RS39005at 2129.034 kb on - strand, within QEN71_RS39005at 2129.096 kb on - strand, within QEN71_RS39005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,126,420 + QEN71_RS38995 0.56 +0.3
2,126,420 + QEN71_RS38995 0.56 +1.5
2,126,420 + QEN71_RS38995 0.56 -1.7
2,126,420 + QEN71_RS38995 0.56 -0.1
2,126,421 - QEN71_RS38995 0.56 -0.2
2,126,421 - QEN71_RS38995 0.56 -0.8
2,126,422 + QEN71_RS38995 0.56 -0.0
2,126,422 + QEN71_RS38995 0.56 +1.1
2,126,422 + QEN71_RS38995 0.56 -0.2
2,126,422 + QEN71_RS38995 0.56 +0.2
2,126,422 + QEN71_RS38995 0.56 -1.0
2,126,422 + QEN71_RS38995 0.56 +0.1
2,126,422 + QEN71_RS38995 0.56 -0.3
2,126,422 + QEN71_RS38995 0.56 -0.2
2,126,422 + QEN71_RS38995 0.56 +0.8
2,126,422 + QEN71_RS38995 0.56 -0.3
2,126,422 + QEN71_RS38995 0.56 -0.1
2,126,422 + QEN71_RS38995 0.56 +0.7
2,126,422 + QEN71_RS38995 0.56 -2.8
2,126,423 - QEN71_RS38995 0.56 -0.6
2,126,423 - QEN71_RS38995 0.56 -0.7
2,126,423 - QEN71_RS38995 0.56 -0.1
2,126,466 + QEN71_RS38995 0.58 +0.8
2,126,645 + QEN71_RS38995 0.67 -0.7
2,126,888 + QEN71_RS38995 0.79 +0.4
2,126,888 + QEN71_RS38995 0.79 +0.3
2,126,888 + QEN71_RS38995 0.79 +0.3
2,126,888 + QEN71_RS38995 0.79 -0.6
2,126,888 + QEN71_RS38995 0.79 +1.2
2,126,889 - QEN71_RS38995 0.79 +0.4
2,126,889 - QEN71_RS38995 0.79 -0.4
2,126,889 - QEN71_RS38995 0.79 -1.6
2,126,889 - QEN71_RS38995 0.79 -1.1
2,126,889 - QEN71_RS38995 0.79 +0.4
2,126,889 - QEN71_RS38995 0.79 -1.2
2,126,889 - QEN71_RS38995 0.79 -0.3
2,126,924 + QEN71_RS38995 0.80 -0.1
2,126,925 - QEN71_RS38995 0.81 -0.4
2,127,219 - +0.2
2,127,219 - -0.3
2,127,363 + +2.0
2,127,364 - -0.3
2,127,364 - +0.7
2,127,712 + QEN71_RS39000 0.35 -1.0
2,127,712 + QEN71_RS39000 0.35 +0.5
2,127,712 + QEN71_RS39000 0.35 -0.1
2,127,712 + QEN71_RS39000 0.35 -2.2
2,127,713 - QEN71_RS39000 0.35 -0.5
2,127,713 - QEN71_RS39000 0.35 +0.3
2,127,713 - QEN71_RS39000 0.35 +0.6
2,127,713 - QEN71_RS39000 0.35 +0.4
2,127,713 - QEN71_RS39000 0.35 +0.8
2,127,713 - QEN71_RS39000 0.35 -1.2
2,127,713 - QEN71_RS39000 0.35 -0.9
2,127,737 - QEN71_RS39000 0.38 +1.1
2,127,873 + QEN71_RS39000 0.53 +0.5
2,127,873 + QEN71_RS39000 0.53 -0.5
2,127,874 - QEN71_RS39000 0.53 -1.9
2,127,874 - QEN71_RS39000 0.53 +0.3
2,127,874 - QEN71_RS39000 0.53 +1.2
2,127,874 - QEN71_RS39000 0.53 -0.5
2,127,908 - QEN71_RS39000 0.56 -0.5
2,128,121 - QEN71_RS39000 0.80 -0.4
2,128,121 - QEN71_RS39000 0.80 -0.4
2,128,121 - QEN71_RS39000 0.80 +1.1
2,128,300 + +0.2
2,128,311 - -0.3
2,128,607 + QEN71_RS39005 0.17 -0.5
2,128,608 - QEN71_RS39005 0.17 -1.6
2,128,608 - QEN71_RS39005 0.17 +0.4
2,129,031 + QEN71_RS39005 0.41 -1.3
2,129,033 + QEN71_RS39005 0.41 +0.4
2,129,034 - QEN71_RS39005 0.41 -1.2
2,129,034 - QEN71_RS39005 0.41 +0.3
2,129,096 - QEN71_RS39005 0.44 -1.3

Or see this region's nucleotide sequence