Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37250

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37240 and QEN71_RS37245 are separated by 477 nucleotidesQEN71_RS37245 and QEN71_RS37250 are separated by 141 nucleotidesQEN71_RS37250 and QEN71_RS37255 are separated by 23 nucleotides QEN71_RS37240: QEN71_RS37240 - AAA family ATPase, at 1,723,494 to 1,725,407 _RS37240 QEN71_RS37245: QEN71_RS37245 - DUF1328 domain-containing protein, at 1,725,885 to 1,726,046 _RS37245 QEN71_RS37250: QEN71_RS37250 - type II 3-dehydroquinate dehydratase, at 1,726,188 to 1,726,625 _RS37250 QEN71_RS37255: QEN71_RS37255 - Gfo/Idh/MocA family oxidoreductase, at 1,726,649 to 1,727,710 _RS37255 Position (kb) 1726 1727Strain fitness (log2 ratio) -1 0 1 2at 1725.291 kb on - strandat 1725.309 kb on - strandat 1725.309 kb on - strandat 1725.309 kb on - strandat 1725.364 kb on + strandat 1725.365 kb on - strandat 1725.523 kb on + strandat 1725.524 kb on - strandat 1725.564 kb on + strandat 1725.623 kb on - strandat 1725.623 kb on - strandat 1725.623 kb on - strandat 1725.626 kb on + strandat 1725.626 kb on + strandat 1725.627 kb on - strandat 1725.627 kb on - strandat 1725.627 kb on - strandat 1725.647 kb on - strandat 1725.665 kb on + strandat 1725.666 kb on - strandat 1725.678 kb on - strandat 1725.719 kb on + strandat 1725.719 kb on + strandat 1725.719 kb on + strandat 1725.719 kb on + strandat 1725.719 kb on + strandat 1725.720 kb on - strandat 1725.720 kb on - strandat 1725.720 kb on - strandat 1725.743 kb on - strandat 1725.874 kb on + strandat 1725.874 kb on + strandat 1725.875 kb on - strandat 1725.997 kb on - strand, within QEN71_RS37245at 1726.005 kb on + strand, within QEN71_RS37245at 1726.005 kb on + strand, within QEN71_RS37245at 1726.005 kb on + strand, within QEN71_RS37245at 1726.005 kb on + strand, within QEN71_RS37245at 1726.006 kb on - strand, within QEN71_RS37245at 1726.039 kb on + strandat 1726.040 kb on - strandat 1726.123 kb on - strandat 1726.123 kb on - strandat 1726.127 kb on - strandat 1726.127 kb on - strandat 1726.229 kb on - strandat 1726.229 kb on - strandat 1726.229 kb on - strandat 1726.322 kb on + strand, within QEN71_RS37250at 1726.322 kb on + strand, within QEN71_RS37250at 1726.323 kb on - strand, within QEN71_RS37250at 1726.323 kb on - strand, within QEN71_RS37250at 1726.323 kb on - strand, within QEN71_RS37250at 1726.375 kb on + strand, within QEN71_RS37250at 1726.376 kb on - strand, within QEN71_RS37250at 1726.376 kb on - strand, within QEN71_RS37250at 1726.381 kb on + strand, within QEN71_RS37250at 1726.381 kb on + strand, within QEN71_RS37250at 1726.382 kb on - strand, within QEN71_RS37250at 1726.382 kb on - strand, within QEN71_RS37250at 1726.451 kb on + strand, within QEN71_RS37250at 1726.452 kb on - strand, within QEN71_RS37250at 1726.480 kb on + strand, within QEN71_RS37250at 1726.480 kb on + strand, within QEN71_RS37250at 1726.480 kb on + strand, within QEN71_RS37250at 1726.481 kb on - strand, within QEN71_RS37250at 1726.481 kb on - strand, within QEN71_RS37250at 1726.481 kb on - strand, within QEN71_RS37250at 1726.481 kb on - strand, within QEN71_RS37250at 1726.559 kb on - strand, within QEN71_RS37250at 1726.559 kb on - strand, within QEN71_RS37250at 1726.638 kb on + strandat 1726.638 kb on + strandat 1726.638 kb on + strandat 1726.638 kb on + strandat 1726.638 kb on + strandat 1726.639 kb on - strandat 1726.639 kb on - strandat 1726.776 kb on - strand, within QEN71_RS37255at 1726.884 kb on + strand, within QEN71_RS37255at 1726.884 kb on + strand, within QEN71_RS37255at 1726.884 kb on + strand, within QEN71_RS37255at 1726.885 kb on - strand, within QEN71_RS37255at 1726.885 kb on - strand, within QEN71_RS37255at 1726.885 kb on - strand, within QEN71_RS37255at 1726.941 kb on + strand, within QEN71_RS37255at 1726.941 kb on + strand, within QEN71_RS37255at 1726.941 kb on + strand, within QEN71_RS37255at 1726.941 kb on + strand, within QEN71_RS37255at 1726.941 kb on + strand, within QEN71_RS37255at 1726.941 kb on + strand, within QEN71_RS37255at 1726.942 kb on - strand, within QEN71_RS37255at 1726.942 kb on - strand, within QEN71_RS37255at 1726.968 kb on + strand, within QEN71_RS37255at 1726.969 kb on - strand, within QEN71_RS37255at 1726.969 kb on - strand, within QEN71_RS37255at 1726.969 kb on - strand, within QEN71_RS37255at 1727.235 kb on + strand, within QEN71_RS37255at 1727.235 kb on + strand, within QEN71_RS37255at 1727.235 kb on + strand, within QEN71_RS37255at 1727.236 kb on - strand, within QEN71_RS37255at 1727.250 kb on + strand, within QEN71_RS37255at 1727.250 kb on + strand, within QEN71_RS37255at 1727.250 kb on + strand, within QEN71_RS37255at 1727.250 kb on + strand, within QEN71_RS37255at 1727.251 kb on - strand, within QEN71_RS37255at 1727.251 kb on - strand, within QEN71_RS37255at 1727.251 kb on - strand, within QEN71_RS37255at 1727.461 kb on + strand, within QEN71_RS37255at 1727.461 kb on + strand, within QEN71_RS37255

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,725,291 - +0.5
1,725,309 - -0.9
1,725,309 - +0.3
1,725,309 - +0.6
1,725,364 + -1.3
1,725,365 - -0.6
1,725,523 + -1.0
1,725,524 - -1.1
1,725,564 + -0.6
1,725,623 - +1.1
1,725,623 - -0.7
1,725,623 - -0.1
1,725,626 + +0.4
1,725,626 + +0.1
1,725,627 - -0.3
1,725,627 - -0.0
1,725,627 - -0.7
1,725,647 - -0.2
1,725,665 + +1.8
1,725,666 - -0.0
1,725,678 - -0.3
1,725,719 + -0.2
1,725,719 + +1.5
1,725,719 + -0.3
1,725,719 + +1.3
1,725,719 + +0.4
1,725,720 - +0.2
1,725,720 - -0.4
1,725,720 - +0.4
1,725,743 - -0.2
1,725,874 + +0.9
1,725,874 + +0.1
1,725,875 - -0.7
1,725,997 - QEN71_RS37245 0.69 +0.5
1,726,005 + QEN71_RS37245 0.74 +0.4
1,726,005 + QEN71_RS37245 0.74 +0.3
1,726,005 + QEN71_RS37245 0.74 -1.3
1,726,005 + QEN71_RS37245 0.74 -0.3
1,726,006 - QEN71_RS37245 0.75 +0.7
1,726,039 + +0.3
1,726,040 - +0.3
1,726,123 - -0.9
1,726,123 - -0.1
1,726,127 - -0.2
1,726,127 - +0.5
1,726,229 - +0.2
1,726,229 - -0.8
1,726,229 - -0.6
1,726,322 + QEN71_RS37250 0.31 +0.0
1,726,322 + QEN71_RS37250 0.31 -0.1
1,726,323 - QEN71_RS37250 0.31 -0.9
1,726,323 - QEN71_RS37250 0.31 +0.2
1,726,323 - QEN71_RS37250 0.31 -0.2
1,726,375 + QEN71_RS37250 0.43 +0.1
1,726,376 - QEN71_RS37250 0.43 +0.3
1,726,376 - QEN71_RS37250 0.43 +0.1
1,726,381 + QEN71_RS37250 0.44 -0.6
1,726,381 + QEN71_RS37250 0.44 -0.0
1,726,382 - QEN71_RS37250 0.44 -0.2
1,726,382 - QEN71_RS37250 0.44 -0.5
1,726,451 + QEN71_RS37250 0.60 -0.1
1,726,452 - QEN71_RS37250 0.60 +0.8
1,726,480 + QEN71_RS37250 0.67 -1.6
1,726,480 + QEN71_RS37250 0.67 +0.7
1,726,480 + QEN71_RS37250 0.67 +0.6
1,726,481 - QEN71_RS37250 0.67 +1.0
1,726,481 - QEN71_RS37250 0.67 -0.1
1,726,481 - QEN71_RS37250 0.67 -0.3
1,726,481 - QEN71_RS37250 0.67 -0.2
1,726,559 - QEN71_RS37250 0.85 -0.4
1,726,559 - QEN71_RS37250 0.85 -0.6
1,726,638 + +0.2
1,726,638 + -0.0
1,726,638 + +0.3
1,726,638 + +0.7
1,726,638 + -0.8
1,726,639 - -0.7
1,726,639 - -0.6
1,726,776 - QEN71_RS37255 0.12 +0.0
1,726,884 + QEN71_RS37255 0.22 -0.2
1,726,884 + QEN71_RS37255 0.22 -1.1
1,726,884 + QEN71_RS37255 0.22 -0.5
1,726,885 - QEN71_RS37255 0.22 +0.3
1,726,885 - QEN71_RS37255 0.22 -0.6
1,726,885 - QEN71_RS37255 0.22 +0.3
1,726,941 + QEN71_RS37255 0.27 +0.2
1,726,941 + QEN71_RS37255 0.27 +0.2
1,726,941 + QEN71_RS37255 0.27 -0.5
1,726,941 + QEN71_RS37255 0.27 +0.8
1,726,941 + QEN71_RS37255 0.27 -0.6
1,726,941 + QEN71_RS37255 0.27 +0.2
1,726,942 - QEN71_RS37255 0.28 -0.8
1,726,942 - QEN71_RS37255 0.28 -0.2
1,726,968 + QEN71_RS37255 0.30 -0.7
1,726,969 - QEN71_RS37255 0.30 -0.2
1,726,969 - QEN71_RS37255 0.30 -0.2
1,726,969 - QEN71_RS37255 0.30 -0.6
1,727,235 + QEN71_RS37255 0.55 +0.4
1,727,235 + QEN71_RS37255 0.55 -1.0
1,727,235 + QEN71_RS37255 0.55 -0.5
1,727,236 - QEN71_RS37255 0.55 -0.2
1,727,250 + QEN71_RS37255 0.57 -0.8
1,727,250 + QEN71_RS37255 0.57 +0.8
1,727,250 + QEN71_RS37255 0.57 -0.3
1,727,250 + QEN71_RS37255 0.57 +0.9
1,727,251 - QEN71_RS37255 0.57 +0.6
1,727,251 - QEN71_RS37255 0.57 -1.0
1,727,251 - QEN71_RS37255 0.57 -1.0
1,727,461 + QEN71_RS37255 0.76 -1.7
1,727,461 + QEN71_RS37255 0.76 -0.2

Or see this region's nucleotide sequence